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Fermentation Engineer Jobs (NOW HIRING)

Manus Bio

Fermentation Engineer

Augusta, GA · On-site

Fermentation Engineer Augusta, Georgia, United States, Full-Time Manus works across industries and value chains to accelerate the transition to BioAlternatives - better performing and more ...

Manus Bio

Fermentation Engineer

Augusta, GA

Fermentation Engineer Augusta, Georgia, United States, Full-Time Manus works across industries and value chains to accelerate the transition to BioAlternatives better performing and more sustainable ...

Manus

Fermentation Engineer

Augusta, GA

Fermentation Engineer Augusta, Georgia, United States, Full-Time Manus works across industries and value chains to accelerate the transition to BioAlternatives - better performing and more ...

Manus Bio

Fermentation Engineer II

Augusta, GA

Fermentation Engineer II Augusta, Georgia, United States, Full-Time Manus works across industries and value chains to accelerate the transition to BioAlternatives better performing and more ...

Manus Bio

Fermentation Engineer II

Augusta, GA · On-site

Fermentation Engineer II Augusta, Georgia, United States, Full-Time Manus works across industries and value chains to accelerate the transition to BioAlternatives - better performing and more ...

Manus

Fermentation Engineer II

Augusta, GA

Fermentation Engineer II Augusta, Georgia, United States, Full-Time Manus works across industries and value chains to accelerate the transition to BioAlternatives - better performing and more ...

Archer Daniels Midland

Pilot Fermentation Engineer - Decatur, IL The Pilot Fermentation Engineer is responsible for supporting optimization projects and implementing new technologies in existing production and piloting ...

Cargill

Fermentation Scientist

Plymouth, MN · On-site

$50K - $80K/yr

Master's degree or other post-secondary degree in biochemical engineering, chemical engineering ... Knowledge of fermentation principles relevant to bioprocess development * Education or experience ...

Cargill

Fermentation Scientist

Plymouth, MN

$50K - $80K/yr

Master's degree or other post-secondary degree in biochemical engineering, chemical engineering ... Knowledge of fermentation principles relevant to bioprocess development * Education or experience ...

Cargill

Fermentation Scientist

Plymouth, MN

$50K - $80K/yr

Master's degree or other post-secondary degree in biochemical engineering, chemical engineering ... Knowledge of fermentation principles relevant to bioprocess development * Education or experience ...

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Fermentation Engineer information

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$41K

$110.7K

$150.5K

How much do fermentation engineer jobs pay per year?

As of Jul 2, 2026, the average yearly pay for fermentation engineer in the United States is $110,663.00, according to ZipRecruiter salary data. Most workers in this role earn between $90,500.00 and $147,500.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a Fermentation Engineer, and why are they important?

To thrive as a Fermentation Engineer, you need a solid background in bioprocess engineering, microbiology, and chemical engineering, often supported by a relevant degree. Familiarity with fermentation control systems, bioreactor operation, and analytical laboratory tools is typically required. Strong problem-solving, teamwork, and communication skills help you optimize processes and collaborate across multidisciplinary teams. These competencies are vital to ensure efficient, safe, and high-quality fermentation processes in industries like biotech, food, and pharmaceuticals.

What engineers make $200,000 a year?

Senior engineers in specialized fields such as petroleum, aerospace, or software engineering often earn $200,000 or more annually, especially with extensive experience, advanced skills, and relevant certifications. Leadership roles like engineering managers or directors in high-demand industries can also reach or exceed this salary level.

What are the most common challenges faced by Fermentation Engineers in scaling up processes from lab to production?

Fermentation Engineers often encounter challenges when scaling up processes from laboratory to industrial scale, such as maintaining consistent product yields, ensuring robust microbial performance, and managing contamination risks. Differences in equipment, mixing, oxygen transfer, and temperature control can significantly impact the reproducibility and efficiency of fermentation. To address these challenges, engineers work closely with cross-functional teams, including microbiologists, process engineers, and quality assurance, to optimize protocols and implement rigorous monitoring systems throughout scale-up.

What does a fermentation engineer do?

A fermentation engineer designs, develops, and optimizes fermentation processes to produce products such as biofuels, pharmaceuticals, or food ingredients. They work with microbiology, biochemistry, and process control tools to ensure efficient and consistent production, often operating in laboratory or manufacturing environments and requiring knowledge of sterile techniques and process monitoring.

What Does a Fermentation Engineer Do?

A fermentation engineer uses state-of-the-art technologies to formulate new products and refine the processes used in existing ones. Your responsibilities in this career include setting up and testing a process involving a microorganism, such as a yeast or a bacterium, in a fermentor to create new products. You use biotechnology techniques like recombinant DNA technology. Your duties also involve operating sophisticated equipment, such as bioreactors or robots. You can find employment in a wide range of industries, from food production to agriculture to medical science.

What is the difference between Fermentation Engineer vs Microbiologist?

AspectFermentation EngineerMicrobiologist
Required CredentialsBachelor's in Bioengineering, Chemical Engineering, or related field; experience in fermentation processesBachelor's or higher in Microbiology, Biology, or related field; laboratory skills
Work EnvironmentIndustrial labs, manufacturing plants, R&D facilitiesResearch labs, clinical labs, academic institutions
Industry UsageBiotech, pharmaceuticals, food & beverage, biofuel productionHealthcare, research, environmental studies, food safety

Fermentation Engineers focus on designing, optimizing, and scaling fermentation processes in industrial settings, while Microbiologists primarily conduct research and analysis of microorganisms in laboratory environments. Both roles require a strong background in microbiology, but Fermentation Engineers emphasize process engineering and production, whereas Microbiologists focus on scientific study and experimentation.

What engineers make $500,000?

Senior engineers in specialized fields such as petroleum, aerospace, or software engineering can earn $500,000 or more annually, often through a combination of base salary, bonuses, and stock options. Achieving this level typically requires extensive experience, advanced skills, and often leadership roles or working in high-paying industries.

What engineers make $300,000 a year?

Senior engineers in specialized fields such as petroleum, aerospace, or software engineering can earn $300,000 or more annually, especially with extensive experience, advanced skills, and leadership roles. High compensation often involves working in high-demand industries, holding managerial or executive positions, or possessing rare technical expertise and certifications.
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Fermentation Engineer jobs near you
Infographic showing various Fermentation Engineer job openings in the United States as of June 2026, with employment types broken down into 96% Full Time, 1% Part Time, and 3% Contract. Highlights an 89% Physical, 4% Hybrid, and 7% Remote job distribution, with an average salary of $110,663 per year, or $53.2 per hour.
Fermentation Engineer

Fermentation Engineer

Manus Bio

Augusta, GA • On-site

Full-time

Posted 16 days ago

Job description

Fermentation Engineer Augusta, Georgia, United States, Full-Time
Manus works across industries and value chains to accelerate the transition to BioAlternatives - better performing and more sustainable versions of complex molecules traditionally sourced from plants, animals, or fossil fuels. Our platform is proven to work across scales, bridging the Valley of Death between lab and manufacturing more efficiently and more reliably to deliver the benefits of synthetic biology today. We are seeking a self-motivated and highly organized individual for a position that will specialize in and lead all laboratory operations at our Boston BioFacility.
We are seeking a Fermentation Engineer to be a part of our process development team. This role focuses on fermentation science and development to bring new commercial bioprocesses through the Manus R&D pipeline. The Fermentation Engineer supports the development, optimization, and scale-up of microbial fermentation processes for industrial biotechnology applications. This role involves executing lab- and pilot-scale fermentations, analyzing data, and collaborating cross-functionally to improve yield, productivity, and process robustness.
Why work at Manus:
  • Opportunity - For motivated, results-oriented team members, our growth creates opportunities for personal and professional advancement.
  • Accountability - You are given the resources you need to succeed and the freedom to make it happen; in return, we hold each other accountable for our high expectations.
  • Passion - We love what we do and enjoy working with others who feel the same way. We embrace the challenge and hard work that comes with working on the cutting edge.

Overview
Manus works across industries and value chains to accelerate the transition to BioAlternatives - better performing and more sustainable versions of complex molecules traditionally sourced from plants, animals, or fossil fuels. Our platform is proven to work across scales, bridging the Valley of Death between lab and manufacturing more efficiently and more reliably to deliver the benefits of synthetic biology today.
We are seeking a Fermentation Engineer II or Senior Fermentation Engineer to be a part of our process development team. This role focuses on fermentation science and development to bring new commercial bioprocesses through the Manus R&D pipeline. The Fermentation Engineer is responsible for the design, development, optimization, and scale-up of microbial fermentation processes to produce bio-alternatives, applying fundamental microbial physiology and fermentation science knowledge to achieve applied bioprocess objectives. This role bridges R&D and manufacturing, leading fermentation development from lab through pilot and commercial scales while ensuring robust, cost-effective, and scalable operations.
This hands-on position requires a desire and ability to work as an integral part of a multidisciplinary team, as well as the demonstration of a high degree of flexibility, creativity, and initiative. This person will be expected to play an integral part of Manus's process development team located in Augusta, GA.
Responsibilities
Fermentation Operations
  • Contribute with development of experimental plans
  • Set up, operate, and monitor lab- and pilot-scale bioreactors (e.g., 1-4000 L scale)
  • Prepare media, inoculum, and sterile systems using aseptic techniques
  • Execute fermentation runs following SOPs and experimental plans
  • Troubleshoot basic process deviations (e.g., contamination, pH drift, DO issues)

Process Development & Optimization
  • Assist in developing fermentation strategies (batch, fed-batch, continuous)
  • Perform optimization studies (media composition, feeding strategies, temperature, pH)
  • Support scale-up activities from bench to pilot scale
  • Collect and analyze process data to improve performance metrics (yield, titer, productivity)

Analytical & Data Analysis
  • Perform routine sampling and analyze fermentation parameters (OD, cell density, metabolites)
  • Maintain accurate experimental records (ELN or lab notebooks)
  • Use data analysis tools (Excel, JMP, Python, or similar) to interpret results
  • Prepare summaries, reports, and presentations of experimental findings

Equipment & Lab Maintenance
  • Maintain and calibrate fermentation and analytical equipment
  • Ensure proper cleaning, sterilization (CIP/SIP), and maintenance of bioreactors
  • Assist with installation and qualification of new equipment

Documentation & Compliance
  • Follow safety, quality, and regulatory guidelines (e.g., GMP where applicable)
  • Maintain SOPs and batch records
  • Support audits and documentation requirements

Cross-functional Collaboration
  • Work with molecular biology, downstream processing, and analytics teams
  • Support technology transfer to manufacturing teams
  • Communicate results effectively to internal stakeholders

Basic Qualifications
  • PhD in Fermentation Sciences, Engineering or related field OR
  • MS with 8+ years or BS with 13+ years relevant experience
  • Required Technical Expertise
  • Expertise in bench and pilot-scale fermentation process development
  • Expertise in microbial physiology
  • Critical thinker with enthusiasm for deriving solutions to complex challenges

Preferred Experience
  • Experience with analytical instrumentation (GC, LC)
  • Experience in scale-up of fermentation processes from lab-scale to pilot plant and/or production-scale

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