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Fermentation Engineer Jobs (NOW HIRING)

Provide technical leadership and engineering support to improve performance, reliability, and efficiency of fermentation and Packaging Operations. The Process Engineer will optimize manufacturing ...

Provide technical leadership and engineering support to improve performance, reliability, and efficiency of fermentation and Packaging Operations. The Process Engineer will optimize manufacturing ...

We are seeking an experienced fermentation scientist/engineer to lead the design, optimization, and scale-up of commercial ethanol fermentation processes. The ideal candidate is a hands-on technical ...

We are seeking an experienced fermentation scientist/engineer to lead the design, optimization, and scale-up of commercial ethanol fermentation processes. The ideal candidate is a hands-on technical ...

Provides technical leadership in microbial fermentation and bioprocess operations. This role ... Bachelor of Science degree in an Engineering discipline (Chemical, Biochemical, Bioengineering, or ...

Provides technical leadership in microbial fermentation and bioprocess operations. This role ... Bachelor of Science degree in an Engineering discipline (Chemical, Biochemical, Bioengineering, or ...

Bioprocess Engineer

South Bend, IN · On-site

$75K - $95K/yr

Provides technical leadership in microbial fermentation and bioprocess operations. This role ... Bachelor of Science degree in an Engineering discipline (Chemical, Biochemical, Bioengineering, or ...

Apply Early

Oversee production engineering for TXS-1, Again's first commercial gas fermentation plant * Manage engineers and technicians * Optimize and debottleneck production processes, particularly gas ...

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Fermentation Engineer information

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$41K

$110.7K

$150.5K

How much do fermentation engineer jobs pay per year?

As of Jul 2, 2026, the average yearly pay for fermentation engineer in the United States is $110,663.00, according to ZipRecruiter salary data. Most workers in this role earn between $90,500.00 and $147,500.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a Fermentation Engineer, and why are they important?

To thrive as a Fermentation Engineer, you need a solid background in bioprocess engineering, microbiology, and chemical engineering, often supported by a relevant degree. Familiarity with fermentation control systems, bioreactor operation, and analytical laboratory tools is typically required. Strong problem-solving, teamwork, and communication skills help you optimize processes and collaborate across multidisciplinary teams. These competencies are vital to ensure efficient, safe, and high-quality fermentation processes in industries like biotech, food, and pharmaceuticals.

What engineers make $200,000 a year?

Senior engineers in specialized fields such as petroleum, aerospace, or software engineering often earn $200,000 or more annually, especially with extensive experience, advanced skills, and relevant certifications. Leadership roles like engineering managers or directors in high-demand industries can also reach or exceed this salary level.

What are the most common challenges faced by Fermentation Engineers in scaling up processes from lab to production?

Fermentation Engineers often encounter challenges when scaling up processes from laboratory to industrial scale, such as maintaining consistent product yields, ensuring robust microbial performance, and managing contamination risks. Differences in equipment, mixing, oxygen transfer, and temperature control can significantly impact the reproducibility and efficiency of fermentation. To address these challenges, engineers work closely with cross-functional teams, including microbiologists, process engineers, and quality assurance, to optimize protocols and implement rigorous monitoring systems throughout scale-up.

What does a fermentation engineer do?

A fermentation engineer designs, develops, and optimizes fermentation processes to produce products such as biofuels, pharmaceuticals, or food ingredients. They work with microbiology, biochemistry, and process control tools to ensure efficient and consistent production, often operating in laboratory or manufacturing environments and requiring knowledge of sterile techniques and process monitoring.

What Does a Fermentation Engineer Do?

A fermentation engineer uses state-of-the-art technologies to formulate new products and refine the processes used in existing ones. Your responsibilities in this career include setting up and testing a process involving a microorganism, such as a yeast or a bacterium, in a fermentor to create new products. You use biotechnology techniques like recombinant DNA technology. Your duties also involve operating sophisticated equipment, such as bioreactors or robots. You can find employment in a wide range of industries, from food production to agriculture to medical science.

What is the difference between Fermentation Engineer vs Microbiologist?

AspectFermentation EngineerMicrobiologist
Required CredentialsBachelor's in Bioengineering, Chemical Engineering, or related field; experience in fermentation processesBachelor's or higher in Microbiology, Biology, or related field; laboratory skills
Work EnvironmentIndustrial labs, manufacturing plants, R&D facilitiesResearch labs, clinical labs, academic institutions
Industry UsageBiotech, pharmaceuticals, food & beverage, biofuel productionHealthcare, research, environmental studies, food safety

Fermentation Engineers focus on designing, optimizing, and scaling fermentation processes in industrial settings, while Microbiologists primarily conduct research and analysis of microorganisms in laboratory environments. Both roles require a strong background in microbiology, but Fermentation Engineers emphasize process engineering and production, whereas Microbiologists focus on scientific study and experimentation.

What engineers make $500,000?

Senior engineers in specialized fields such as petroleum, aerospace, or software engineering can earn $500,000 or more annually, often through a combination of base salary, bonuses, and stock options. Achieving this level typically requires extensive experience, advanced skills, and often leadership roles or working in high-paying industries.

What engineers make $300,000 a year?

Senior engineers in specialized fields such as petroleum, aerospace, or software engineering can earn $300,000 or more annually, especially with extensive experience, advanced skills, and leadership roles. High compensation often involves working in high-demand industries, holding managerial or executive positions, or possessing rare technical expertise and certifications.
What cities are hiring for Fermentation Engineer jobs? Cities with the most Fermentation Engineer job openings:
What states have the most Fermentation Engineer jobs? States with the most job openings for Fermentation Engineer jobs include:
What job categories do people searching Fermentation Engineer jobs look for? The top searched job categories for Fermentation Engineer jobs are:
Infographic showing various Fermentation Engineer job openings in the United States as of June 2026, with employment types broken down into 96% Full Time, 1% Part Time, and 3% Contract. Highlights an 89% Physical, 4% Hybrid, and 7% Remote job distribution, with an average salary of $110,663 per year, or $53.2 per hour.
Senior Scientist, Fermentation - IR&D, Product Development

Senior Scientist, Fermentation - IR&D, Product Development

Catalent Pharma Solutions

Baltimore, MD

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 6 days ago


Catalent rating

7.4

Company rating: 7.4 out of 10

Based on 52 frontline employees who took The Breakroom Quiz

53rd of 73 rated pharmaceutical


Job description

Senior Scientist, Fermentation - IR&D, Product Development

About Site

Catalent's Baltimore site is a leading facility specializing in biologics development and manufacturing, offering state-of-the-art capabilities to support advanced therapies. The campus provides a collaborative environment where teams work on innovative solutions for clinical and commercial supply, including cell and gene therapies. With modern laboratories and manufacturing suites, the site is designed to foster scientific excellence and operational efficiency. Employees here are part of a dynamic setting that emphasizes quality, innovation, and patient-focused outcomes, making it an exciting place to contribute to life-changing medicines.

Position Summary

We have an opportunity for a Senior Scientist, Fermentation - IR&D, Product Development to join our team. This role supports process and product innovation to keep Catalent at the forefront of leading CDMOs. You will work on upstream fermentation development, clone selection, and technology improvements for novel vectors. The position involves collaboration with internal teams and clients, contributing to innovative solutions for advanced therapies.

Shift: Monday - Friday 8AM - 5PM
Location: Baltimore, MD - BioPark
100% Onsite

The Role

  • Lead platform fit assessment for novel vectors (IR&D) and optimize upstream fermentation conditions.
  • Execute clone selection using DASGIP (4x1L) and Eppendorf BioFlo systems to identify candidates for RCB and eventual GMP MCB generation.
  • Perform strain selection across E. coli hosts to ensure plasmid stability, integrity, and high yield.
  • Evaluate novel plasmid vectors for AAV/lentiviral production via shake-flask transfection studies.
  • Conduct transfection, cloning, and high-throughput screening (ambr15 48bioreactor system) to identify top-performing clones.
  • Tech transfer clone-specific fermentation processes to Process Development and GMP manufacturing (UpTempo and custom client vectors).
  • Drive innovation by improving strain selection, fermentation processes, media, and lysis strategies.
  • Maintain plasmid inventory, oversee fermentation lab operations, and support critical equipment ownership.
  • Troubleshoot technical challenges while collaborating cross-functionally, communicating with stakeholders/clients, and mentoring junior team members.
  • Other duties as assigned.

The Candidate

Minimum Requirements

  • PhD degree with 4+ years of upstream process development/R&D, or Master's degree with 8+ years, or BA/BS with 10+ years in upstream process development/R&D. Education must be in a biological, scientific, or engineering discipline (biology, biochemistry, chemical engineering, or equivalent).
  • Experience with a wide array of E. coli strains including Dh5, DH10b, NEB, Stbl.
  • Excellent problem-solving and written/verbal communication skills.
  • Strong interpersonal skills and ability to work effectively within a team.
  • Ability to execute detailed experimental plans, record procedures, analyze data, and present results.
  • Proficient in MS Office, specifically Excel and Word, and programs for laboratory equipment.
  • Ability to sit at a desk or computer for periods of time to prepare documentation, reports, and data analyses.
  • Ability to work in a laboratory environment for extended periods, including standing, walking, or sitting.
  • Manual dexterity to safely and accurately handle laboratory instruments, pipettes, chromatography equipment, and various tubing and fittings.
  • Occasional lifting of containers or lab equipment weighing up to 30 pounds.
  • Good vision and hand-eye coordination for detailed work.
  • Use of personal protective equipment (PPE) including lab coats, gloves, safety goggles, and, when required, respiratory protection.

Preferred Skills & Background

  • Experience with mammalian cell types including HEK293, CHO, and others is a plus.
  • Scale-up of fermentation or cell-culture processes to 50L+ bioreactor scale is a plus.
  • Experience with preparation of regulatory documents is a plus.
  • Experience with various cell lines for recombinant protein and gene therapy vector expression, process development, and/or bioprocess manufacturing is a plus.

Pay

The anticipated salary range for this position in MD is $120,000 - $150,000 Plus Bonus. The final salary offered to a successful candidate may vary, and will be dependent on several factors that may include but are not limited to: the type and length of experience within the job, type and length of experience within the industry, skillset, education, business needs, etc. Catalent is a multi-state employer, and this salary range may not reflect positions that work in other states.

Why You Should Join Catalent

  • Biologics services include process development, analytical development, quality systems, stability studies, fill/finish, and cell and virus banks.
  • Featured technologies include adeno-associated virus (AAV), vaccines, and oncolytic virus.
  • 152 hours PTO plus 8 paid holidays.
  • Medical, dental, and vision coverage options.
  • Generous 401(k) match.
  • Tuition reimbursement.

Catalent offers rewarding opportunities to further your career! Join the global drug development and delivery leader and help us bring over 7,000 life-saving and life-enhancing products to patients around the world. Catalent is an exciting and growing international company where employees work directly with pharma, biopharma and consumer health companies of all sizes to advance new medicines from early development to clinical trials and to the market. Catalent produces more than 70 billion doses per year, and each one will be used by someone who is counting on us. Join us in making a difference.

personal initiative. dynamic pace. meaningful work.

Visit Catalent Careers to explore career opportunities.

Catalent is an Equal Opportunity Employer, including disability and veterans.

If you require reasonable accommodation for any part of the application or hiring process due to a disability, you may submit your request by sending an email, and confirming your request for an accommodation and include the job number, title and location to DisabilityAccommodations@catalent.com. This option is reserved for individuals who require accommodation due to a disability. Information received will be processed by a U.S. Catalent employee and then routed to a local recruiter who will provide assistance to ensure appropriate consideration in the application or hiring process.

Notice to Agency and Search Firm Representatives: Catalent Pharma Solutions (Catalent) is not accepting unsolicited resumes from agencies and/or search firms for this job posting. Resumes submitted to any Catalent employee by a third party agency and/or search firm without a valid written & signed search agreement, will become the sole property of Catalent. No fee will be paid if a candidate is hired for this position as a result of an unsolicited agency or search firm referral. Thank you.

Important Security Notice to U.S. Job Seekers:

Catalent NEVER asks candidates to provide any type of payment, bank details, photocopies of identification, social security number or other highly sensitive personal information during the offer process, and we NEVER do so via email or social media. If you receive any such request, DO NOT respond- it is a fraudulent request. Please forward such requests to spam@catalent.com for us to investigate with local authorities.

California Job Seekers can find our California Job Applicant Notice HERE.


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About Catalent

Sourced by ZipRecruiter

Catalent is an exciting and growing international company where employees work directly with pharma, biopharma and consumer health companies of all sizes to advance new medicines from early development to clinical trials and to the market. Catalent produces more than 70 billion doses per year, and each one will be used by someone who is counting on us. Join us in making a difference.Catalent is committed to the health and safety of its employees, visitors and the customers and patients we serve.

Industry

Pharmaceutical product wholesalers

Company size

10,000+ Employees

Headquarters location

Somerset, NJ, US

Year founded

2007

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