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Fermentation Process Engineer Jobs (NOW HIRING)

Manus Bio

Fermentation Engineer

Augusta, GA · On-site

We are seeking a Fermentation Engineer to be a part of our process development team. This role focuses on fermentation science and development to bring new commercial bioprocesses through the Manus ...

Manus

Fermentation Engineer

Augusta, GA

We are seeking a Fermentation Engineer to be a part of our process development team. This role focuses on fermentation science and development to bring new commercial bioprocesses through the Manus ...

Manus Bio

Fermentation Engineer

Augusta, GA

We are seeking a Fermentation Engineer to be a part of our process development team. This role focuses on fermentation science and development to bring new commercial bioprocesses through the Manus ...

Manus

Fermentation Engineer II

Augusta, GA · On-site

We are seeking a Fermentation Engineer II to be a part of our process development team. This role focuses on fermentation science and development to bring new commercial bioprocesses through the ...

Manus Bio

Fermentation Engineer II

Augusta, GA

We are seeking a Fermentation Engineer II to be a part of our process development team. This role focuses on fermentation science and development to bring new commercial bioprocesses through the ...

Manus Bio

Fermentation Engineer II

Augusta, GA · On-site

We are seeking a Fermentation Engineer II to be a part of our process development team. This role focuses on fermentation science and development to bring new commercial bioprocesses through the ...

AB MAURI FOOD INC

Process Engineer

Memphis, TN · On-site

Provide technical leadership and engineering support to improve performance, reliability, and efficiency of fermentation and Packaging Operations. The Process Engineer will optimize manufacturing ...

AB MAURI FOOD INC

Process Engineer

Memphis, TN · On-site

Provide technical leadership and engineering support to improve performance, reliability, and efficiency of fermentation and Packaging Operations. The Process Engineer will optimize manufacturing ...

iSource Group

Be Seen First

Process Engineer

Aiken, SC · On-site

$120K - $140K/yr

Process Engineer | $120K-$150K + Relocation + Stock Options Join an innovative biotech ... Bioprocess, fermentation, or GC analytical experience is a plus What You'll Do: Support day-to-day ...

Again

Production Process Engineer

Texas City, TX · On-site

Oversee production engineering for TXS-1, Again's first commercial gas fermentation plant * Manage engineers and technicians * Optimize and debottleneck production processes, particularly gas ...

Danone North America

Process Engineer

Louisville, CO · Hybrid

$82K - $118K/yr

Job SummaryThe Process Engineer is responsible for optimizing and scaling up manufacturing ... Homogenizationo Fermentation (yogurt, cultured products)o Fillingo Equipment controls and ...

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Fermentation Process Engineer information

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$49.5K

$92K

$142.5K

How much do fermentation process engineer jobs pay per year?

As of Jul 19, 2026, the average yearly pay for fermentation process engineer in the United States is $92,018.00, according to ZipRecruiter salary data. Most workers in this role earn between $74,500.00 and $103,000.00 per year, depending on experience, location, and employer.

What are some common challenges faced by Fermentation Process Engineers during scale-up from lab to production?

Fermentation Process Engineers often encounter challenges when scaling up processes from the lab or pilot scale to full production, such as maintaining consistent product yields, ensuring sterility, and achieving optimal mixing and oxygen transfer. Differences in equipment size and configuration can affect heat and mass transfer rates, making it necessary to adjust parameters and monitor the process closely. Effective communication with cross-functional teams, including microbiologists and production operators, is crucial to address these issues and implement solutions promptly.

What is the difference between Fermentation Process Engineer vs Microbiologist?

AspectFermentation Process EngineerMicrobiologist
CredentialsBachelor's in Chemical, Biochemical, or related engineering fieldBachelor's or higher in Microbiology or related science
Work EnvironmentIndustrial fermentation facilities, manufacturing plantsResearch labs, clinical or environmental settings
Industry UsageBiotech, pharmaceuticals, food & beverage manufacturingResearch institutions, biotech, healthcare
Common Search IntentOptimizing fermentation processes, scale-upStudying microbial behavior, research

While both roles involve microbiology, the Fermentation Process Engineer focuses on designing, optimizing, and scaling fermentation processes in industrial settings. In contrast, Microbiologists primarily conduct research and study microorganisms, often in lab environments. The engineer's role is more application-driven within manufacturing, whereas microbiologists focus on scientific understanding.

What does a Fermentation Process Engineer do?

A Fermentation Process Engineer specializes in designing, optimizing, and overseeing the industrial fermentation processes used to produce products such as pharmaceuticals, food additives, biofuels, and chemicals. Their responsibilities include scaling up laboratory processes to industrial levels, monitoring process parameters, troubleshooting issues, and ensuring that production meets quality and safety standards. They often work closely with microbiologists, chemists, and production teams to improve yields and efficiency while minimizing costs and environmental impact.

What are the key skills and qualifications needed to thrive as a Fermentation Process Engineer, and why are they important?

To thrive as a Fermentation Process Engineer, you need a strong background in chemical engineering, microbiology, or biotechnology, typically supported by a relevant bachelor's or master's degree. Familiarity with bioreactor systems, process control software, and statistical analysis tools, as well as certifications like Six Sigma or Lean Manufacturing, is highly valuable. Strong problem-solving, teamwork, and communication skills help you collaborate with cross-functional teams and troubleshoot complex processes. These skills are essential to optimize production, ensure product quality, and drive innovation in fermentation-based manufacturing.
More about Fermentation Process Engineer jobs
What states have the most Fermentation Process Engineer jobs? States with the most job openings for Fermentation Process Engineer jobs include:
What job categories do people searching Fermentation Process Engineer jobs look for? The top searched job categories for Fermentation Process Engineer jobs are:
Fermentation Process Engineer jobs near you
Infographic showing various Fermentation Process Engineer job openings in the United States as of July 2026, with employment types broken down into 2% Locum Tenens, 93% Full Time, 2% Part Time, and 3% Contract. Highlights an 87% Physical, 4% Hybrid, and 9% Remote job distribution, with an average salary of $92,018 per year, or $44.2 per hour.
Fermentation Engineer

Fermentation Engineer

Manus Bio

Augusta, GA • On-site

Full-time

Posted 4 days ago

Job description

Fermentation Engineer Augusta, Georgia, United States, Full-Time
Manus works across industries and value chains to accelerate the transition to BioAlternatives - better performing and more sustainable versions of complex molecules traditionally sourced from plants, animals, or fossil fuels. Our platform is proven to work across scales, bridging the Valley of Death between lab and manufacturing more efficiently and more reliably to deliver the benefits of synthetic biology today. We are seeking a self-motivated and highly organized individual for a position that will specialize in and lead all laboratory operations at our Boston BioFacility.
We are seeking a Fermentation Engineer to be a part of our process development team. This role focuses on fermentation science and development to bring new commercial bioprocesses through the Manus R&D pipeline. The Fermentation Engineer supports the development, optimization, and scale-up of microbial fermentation processes for industrial biotechnology applications. This role involves executing lab- and pilot-scale fermentations, analyzing data, and collaborating cross-functionally to improve yield, productivity, and process robustness.
This hands-on position requires a desire and ability to work as an integral part of a multidisciplinary team, as well as the demonstration of a high degree of flexibility, creativity, and initiative. This person will be expected to play an integral part of Manus's process development team located in Augusta, GA.
Why work at Manus:
  • Opportunity - For motivated, results-oriented team members, our growth creates opportunities for personal and professional advancement.
  • Accountability - You are given the resources you need to succeed and the freedom to make it happen; in return, we hold each other accountable for our high expectations.
  • Passion - We love what we do and enjoy working with others who feel the same way. We embrace the challenge and hard work that comes with working on the cutting edge.

Responsibilities
Fermentation Operations
  • Contribute with development of experimental plans
  • Set up, operate, and monitor lab- and pilot-scale bioreactors (e.g., 1-4000 L scale)
  • Prepare media, inoculum, and sterile systems using aseptic techniques
  • Execute fermentation runs following SOPs and experimental plans
  • Troubleshoot basic process deviations (e.g., contamination, pH drift, DO issues)

Process Development & Optimization
  • Assist in developing fermentation strategies (batch, fed-batch, continuous)
  • Perform optimization studies (media composition, feeding strategies, temperature, pH)
  • Support scale-up activities from bench to pilot scale
  • Collect and analyze process data to improve performance metrics (yield, titer, productivity)

Analytical & Data Analysis
  • Perform routine sampling and analyze fermentation parameters (OD, cell density, metabolites)
  • Maintain accurate experimental records (ELN or lab notebooks)
  • Use data analysis tools (Excel, JMP, Python, or similar) to interpret results
  • Prepare summaries, reports, and presentations of experimental findings

Equipment & Lab Maintenance
  • Maintain and calibrate fermentation and analytical equipment
  • Ensure proper cleaning, sterilization (CIP/SIP), and maintenance of bioreactors
  • Assist with installation and qualification of new equipment

Documentation & Compliance
  • Follow safety, quality, and regulatory guidelines (e.g., GMP where applicable)
  • Maintain SOPs and batch records
  • Support audits and documentation requirements

Cross-functional Collaboration
  • Work with molecular biology, downstream processing, and analytics teams
  • Support technology transfer to manufacturing teams
  • Communicate results effectively to internal stakeholders

Basic Qualifications
  • PhD in Fermentation Sciences, Engineering or related field OR
  • MS with 8+ years or BS with 13+ years relevant experience
  • Required Technical Expertise
  • Expertise in bench and pilot-scale fermentation process development
  • Expertise in microbial physiology
  • Critical thinker with enthusiasm for deriving solutions to complex challenges

Preferred Experience
  • Experience with analytical instrumentation (GC, LC)
  • Experience in scale-up of fermentation processes from lab-scale to pilot plant and/or production-scale

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