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Fermentation Process Engineer Jobs (NOW HIRING)

Chobani

Process Engineer II - Dairy

New Berlin, NY

Summary The Process Engineer II is responsible for improving the performance, reliability, and ... Provide technical expertise on dairy processing systems including separation, fermentation ...

GEA

Process Engineer

New Richmond, WI

$85K - $120K/yr

The Process Engineer will support sales, engineering, commissioning and optimization of GEA process systems in the Liquid, Fermentation, and Filling engineering team. This position is focused on ...

GEA

Process Engineer

Hudson, WI

$85K - $120K/yr

The Process Engineer will support sales, engineering, commissioning and optimization of GEA process systems in the Liquid, Fermentation, and Filling engineering team. This position is focused on ...

GEA

Process Engineer

River Falls, WI

$85K - $120K/yr

The Process Engineer will support sales, engineering, commissioning and optimization of GEA process systems in the Liquid, Fermentation, and Filling engineering team. This position is focused on ...

GEA

Process Engineer

Roberts, WI

$85K - $120K/yr

The Process Engineer will support sales, engineering, commissioning and optimization of GEA process systems in the Liquid, Fermentation, and Filling engineering team. This position is focused on ...

Chobani

Process Engineer II - Dairy

New Berlin, NY · On-site

Summary The Process Engineer II is responsible for improving the performance, reliability, and ... Provide technical expertise on dairy processing systems including separation, fermentation ...

Chobani

Process Engineer II - Dairy

New Berlin, NY · On-site

Summary The Process Engineer II is responsible for improving the performance, reliability, and ... Provide technical expertise on dairy processing systems including separation, fermentation ...

Verbio North America LLC

Process Engineer

Nevada, IA · On-site

Process Engineer POSITION DETAILS: Job Type: Full-Time Pay: Salary FLSA: Exempt Schedule: M-F with ... Lead fermentation strategies for the biorefinery. * Foster a culture of continuous improvement to ...

MRINetwork Jobs

Process Engineer

Aiken, SC · On-site

Nebo, NC 28761 Telephone: 843-628-5021 tom@mrlowcountry.com Process Engineer- Aiken, SC area ... and fermentation bioprocess is desirable. • Experience in food or pharma industry desired ...

Manus

Process Engineer

Augusta, GA · On-site

We are seeking a highly motivated Process Engineer to support manufacturing operations. This hands ... Good understanding of analytical techniques (GC) and fermentation bioprocess is desirable.

Corbion

Process Engineer

Blair, NE · On-site

Bachelor's Degree in Chemical Engineering required. * 5+ years of experience in process engineering ... Leveraging our advanced capabilities in fermentation and preservation technology, we help customers ...

Manus Bio

Process Engineer

Augusta, GA · On-site

We are seeking a highly motivated Process Engineer to support manufacturing operations. This hands ... Good understanding of analytical techniques (GC) and fermentation bioprocess is desirable.

corbion

Process Engineer

Blair, NE · On-site

Bachelor's Degree in Chemical Engineering required. * 5+ years of experience in process engineering ... Leveraging our advanced capabilities in fermentation and preservation technology, we help customers ...

Corbion

Process Engineer

Blair, NE

Bachelor's Degree in Chemical Engineering required. * 5+ years of experience in process engineering ... Leveraging our advanced capabilities in fermentation and preservation technology, we help customers ...

Manus Bio

Process Engineer

Augusta, GA · On-site

We are seeking a highly motivated Process Engineer to support manufacturing operations. This hands ... Good understanding of analytical techniques (GC) and fermentation bioprocess is desirable.

Verbio North America

Process Engineer

Nevada, IA

Process Engineer POSITION DETAILS: Job Type: Full-Time Pay: Salary FLSA: Exempt Schedule: M-F with ... Lead fermentation strategies for the biorefinery. * Foster a culture of continuous improvement to ...

Foth

Brewing Process Engineer

Madison, WI · Remote

Estimate process engineering hours and schedule for proposals * Oversee and QC engineering work of ... Sizing and specifying brewing and fermentation vessels, beer filtration systems, and yeast ...

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Fermentation Process Engineer information

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$49.5K

$92K

$142.5K

How much do fermentation process engineer jobs pay per year?

As of Jun 7, 2026, the average yearly pay for fermentation process engineer in the United States is $92,018.00, according to ZipRecruiter salary data. Most workers in this role earn between $74,500.00 and $103,000.00 per year, depending on experience, location, and employer.

What are some common challenges faced by Fermentation Process Engineers during scale-up from lab to production?

Fermentation Process Engineers often encounter challenges when scaling up processes from the lab or pilot scale to full production, such as maintaining consistent product yields, ensuring sterility, and achieving optimal mixing and oxygen transfer. Differences in equipment size and configuration can affect heat and mass transfer rates, making it necessary to adjust parameters and monitor the process closely. Effective communication with cross-functional teams, including microbiologists and production operators, is crucial to address these issues and implement solutions promptly.

What is the difference between Fermentation Process Engineer vs Microbiologist?

AspectFermentation Process EngineerMicrobiologist
CredentialsBachelor's in Chemical, Biochemical, or related engineering fieldBachelor's or higher in Microbiology or related science
Work EnvironmentIndustrial fermentation facilities, manufacturing plantsResearch labs, clinical or environmental settings
Industry UsageBiotech, pharmaceuticals, food & beverage manufacturingResearch institutions, biotech, healthcare
Common Search IntentOptimizing fermentation processes, scale-upStudying microbial behavior, research

While both roles involve microbiology, the Fermentation Process Engineer focuses on designing, optimizing, and scaling fermentation processes in industrial settings. In contrast, Microbiologists primarily conduct research and study microorganisms, often in lab environments. The engineer's role is more application-driven within manufacturing, whereas microbiologists focus on scientific understanding.

What does a Fermentation Process Engineer do?

A Fermentation Process Engineer specializes in designing, optimizing, and overseeing the industrial fermentation processes used to produce products such as pharmaceuticals, food additives, biofuels, and chemicals. Their responsibilities include scaling up laboratory processes to industrial levels, monitoring process parameters, troubleshooting issues, and ensuring that production meets quality and safety standards. They often work closely with microbiologists, chemists, and production teams to improve yields and efficiency while minimizing costs and environmental impact.

What are the key skills and qualifications needed to thrive as a Fermentation Process Engineer, and why are they important?

To thrive as a Fermentation Process Engineer, you need a strong background in chemical engineering, microbiology, or biotechnology, typically supported by a relevant bachelor's or master's degree. Familiarity with bioreactor systems, process control software, and statistical analysis tools, as well as certifications like Six Sigma or Lean Manufacturing, is highly valuable. Strong problem-solving, teamwork, and communication skills help you collaborate with cross-functional teams and troubleshoot complex processes. These skills are essential to optimize production, ensure product quality, and drive innovation in fermentation-based manufacturing.
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What cities are hiring for Fermentation Process Engineer jobs? Cities with the most Fermentation Process Engineer job openings:
What states have the most Fermentation Process Engineer jobs? States with the most job openings for Fermentation Process Engineer jobs include:
What job categories do people searching Fermentation Process Engineer jobs look for? The top searched job categories for Fermentation Process Engineer jobs are:
Fermentation Process Engineer jobs near you
Infographic showing various Fermentation Process Engineer job openings in the United States as of May 2026, with employment types broken down into 1% Locum Tenens, 96% Full Time, and 3% Contract. Highlights an 93% Physical, 2% Hybrid, and 5% Remote job distribution, with an average salary of $92,018 per year, or $44.2 per hour.
Process Engineer II - Dairy

Process Engineer II - Dairy

Chobani

New Berlin, NY

Other

Medical, Dental, Vision, Retirement, PTO

Posted 25 days ago

Chobani rating

8.8

Company rating: 8.8 out of 10

Based on 36 frontline employees who took The Breakroom Quiz

17th of 380 rated food and drinks producers

Job description

Summary

The Process Engineer II is responsible for improving the performance, reliability, and efficiency of manufacturing processes within the plant. This role focuses on optimizing processing operations, improving milk yield, reducing losses, and increasing throughput through data analysis, process troubleshooting, and targeted improvement initiatives.

This position works closely with Operations, Quality, Maintenance, and Automation teams to identify process constraints and implement sustainable improvements. The Process Engineer II is expected to take ownership of larger or more complex improvement efforts and provide guidance to less experienced engineers within the team.

Responsibilities
  • Lead process improvement initiatives focused on milk yield optimization, waste reduction, throughput improvement, and process stability.
  • Analyze plant performance data and operational trends to identify opportunities for process optimization and efficiency gains.
  • Partner with Operations leadership to investigate process deviations, product holds, and performance losses, supporting root cause analysis and corrective actions.
  • Provide technical guidance and support to junior engineers, helping structure investigations and improvement work.
  • Develop and maintain process standards and operating parameters to ensure consistent execution across shifts.
  • Monitor and trend key process variables such as protein recovery, solids losses, batch performance, and production yield.
  • Support troubleshooting of complex process issues impacting product quality, production performance, or equipment operation.
  • Work cross-functionally with Operations, Quality, Maintenance, and Automation teams to implement improvements and ensure solutions are sustainable.
  • Translate operational challenges into structured improvement initiatives with measurable results.
  • Ensure process improvements are documented, validated, and sustained within plant operations.
  • Provide technical expertise on dairy processing systems including separation, fermentation, filtration, blending, and related processes.
  • Support operational improvement projects that may require equipment adjustments, process changes, or system configuration improvements.
Requirements
  • Bachelor's degree in mechanical chemical engineering programs (or equivalent)
  • 3 - 7+ years of process engineering experience in food or dairy manufacturing.
  • Ability to guide and support less experienced engineers while leading improvement efforts.
  • Experience in dairy processing is strongly preferred, including exposure to systems such as separation, fermentation, filtration, evaporation, or similar processing operations.
  • Demonstrated ability to lead process optimization or operational improvement initiatives
  • Strong analytical and troubleshooting skills
About Us

Chobani is a food maker with a mission of making high-quality and nutritious food accessible to more people, while elevating our communities and making the world a healthier place. In short: making good food for all. In support of this mission, Chobani is a purpose-driven, people-first, food-and-wellness-focused company, and has been since its founding in 2005 byHamdi Ulukaya, an immigrant to the U.S. The Company manufactures yogurt, oat milk, and creamers - Chobani yogurt is America's No.1 yogurt brand, made with natural ingredients without artificial preservatives. Following the 2023 acquisition of La Colombe, a leading coffee roaster with a shared commitment to quality, craftmanship and impact, the Company began selling cold-pressed espresso and lattes on tap at cafes nationwide, as well as Ready to Drink (RTD) coffee beverages at retail. In 2025, Chobani acquired Daily Harvest, a modern brand offering consumers nutritious, delicious and convenient ready-to-make meals.


Chobani uses food as a force for good in the world - putting humanity first in everything it does. The company's philanthropic efforts prioritize giving back to its communities and beyond. Chobani manufactures its products inNew York,Idaho,MichiganandAustralia, and its products are available throughoutNorth Americaand distributed inAustraliaand other select markets.


For more information, please visitwww.chobani.com or follow us on Facebook, Twitter, Instagram and LinkedIn.

Chobani is an equal opportunity employer. Chobani will not discriminate against any applicant for employment on any basis including, but not limited to race, color, religion, sex, sexual orientation, gender identity, national origin, age, disability, military and/or veteran status, marital status, predisposing genetic characteristics and genetic information, or any other classification protected by federal, state, and local laws.

The salary range for this full-time position is $82,500.00 - $129,800.00, + bonus + equity + benefits. Within the range, individual pay is determined by work location and additional factors, including job-related skills, experience, and relevant education or training. Your recruiter can share more about the specific salary range for your preferred location during the hiring process.

Chobani provides a comprehensive benefits package, including medical, dental, vision coverage, disability insurance, health savings account, flexible spending accounts, and tuition reimbursement. To help save for the future, all employees are eligible for a 401k match of 100% on up to 5% of eligible pay. To support growing families, we provide fertility and childcare assistance, and 12 weeks of parental leave at full pay after six months of continuous employment. In addition, we provide wellness resources which include an employee assistance program, fitness discounts, a wellness reimbursement, on-site gym access (certain locations) and a monthly wellness newsletter to connect you with resources and timely information. We offer various types of paid time of including: 120 hours of paid time off, 11 holidays, and paid volunteer time off.

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