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Remote Protein Engineering Jobs (NOW HIRING)

San Francisco (hybrid) or fully remote from Boston / San Diego Travel: Regular travel to our ... Strong grounding in both structure- and ligand-based drug design - protein-ligand biophysics on one ...

Approval of remote and hybrid work is not guaranteed regardless of work location.For additional ... Experience with software engineering practices for research-grade code, version control (Git ...

Customer Support Associate

$18 - $24.50/hr

... Protein Metrics, OMIQ, FCS Express, LabArchives, NQuery, EasyPanel, MStar, SoftGenetics and ... We offer a dynamic, remote-friendly environment that fosters high integrity and collaboration ...

Customer Support Associate

$18 - $24.50/hr

... Protein Metrics, OMIQ, FCS Express, LabArchives, NQuery, EasyPanel, MStar, SoftGenetics and ... We offer a dynamic, remote-friendly environment that fosters high integrity and collaboration ...

Our brands Pure Protein ® , Body Fortress ® , MET-Rx ® , and FITCrunch ® make better nutrition ... Coursework or interest in supply chain, operations management, business, engineering, or food ...

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Remote Protein Engineering information

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$32.5K

$63K

$95.5K

How much do remote protein engineering jobs pay per year?

As of Jun 24, 2026, the average yearly pay for remote protein engineering in the United States is $62,977.00, according to ZipRecruiter salary data. Most workers in this role earn between $47,000.00 and $72,000.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a Remote Protein Engineer, and why are they important?

To thrive as a Remote Protein Engineer, you need a strong background in molecular biology, biochemistry, and protein design, typically with an advanced degree in a related field. Familiarity with computational modeling tools (such as Rosetta, PyMOL, or FoldX), bioinformatics platforms, and potentially certifications in relevant software are highly valued. Excellent problem-solving, self-motivation, and clear communication skills are crucial for remote collaboration and project management. These competencies ensure the effective design and optimization of proteins, drive innovation, and enable seamless teamwork across distributed environments.

What is remote protein engineering?

Remote protein engineering is the practice of designing, modifying, or analyzing proteins using computational tools and laboratory techniques, while working from a location outside of a traditional lab or office. Professionals in this field often use bioinformatics software, molecular modeling, and virtual collaboration platforms to conduct research and communicate with team members. This approach allows for flexibility and access to a broader talent pool, enabling scientists to contribute to projects from anywhere in the world. Remote protein engineering is commonly used in pharmaceutical, biotechnology, and academic settings to accelerate the development of new drugs, enzymes, and therapeutic proteins.

What are some common challenges faced when working remotely in protein engineering, and how can they be addressed?

Remote protein engineering professionals often encounter challenges such as limited access to laboratory facilities, coordinating experiments across distributed teams, and maintaining effective collaboration with colleagues. To address these issues, many teams rely heavily on virtual lab simulations, robust data-sharing platforms, and frequent video meetings for project alignment. Clear communication, meticulous documentation, and leveraging cloud-based computational tools are essential for ensuring productivity and seamless integration with onsite teams.

What is the difference between Remote Protein Engineering vs Remote Biochemist?

AspectRemote Protein EngineeringRemote Biochemist
Required CredentialsBachelor's or Master's in Biochemistry, Molecular Biology, or related fields; experience in protein designBachelor's or Master's in Biochemistry, Chemistry, or related fields; laboratory experience often preferred
Work EnvironmentPrimarily collaborative, project-based, often involving computational tools and lab workResearch-focused, combining lab experiments and data analysis, sometimes remotely
Industry UsageBiotech, pharmaceuticals, research institutionsAcademic, research institutions, biotech companies
Common Search & ComparisonRemote Protein Engineering vs Remote Biochemist

Remote Protein Engineering and Remote Biochemist roles share similar educational backgrounds and industry settings. However, protein engineering emphasizes designing and modifying proteins, often with computational tools, while biochemists focus on understanding biochemical processes, sometimes involving lab experiments. Both roles are vital in biotech and research sectors, with overlapping skills but distinct focuses.

More about Remote Protein Engineering jobs
What cities are hiring for Remote Protein Engineering jobs? Cities with the most Remote Protein Engineering job openings:
What are the most commonly searched types of Protein Engineering jobs? The most popular types of Protein Engineering jobs are:
What states have the most Remote Protein Engineering jobs? States with the most job openings for Remote Protein Engineering jobs include:
Infographic showing various Remote Protein Engineering job openings in the United States as of June 2026, with employment types broken down into 95% Full Time, and 5% Part Time. Highlights an 9% In-person, and 91% Remote job distribution, with an average salary of $62,977 per year, or $30.3 per hour.
Staff Software Engineer - Data Processing & Execution Platform

Staff Software Engineer - Data Processing & Execution Platform

Dotmatics

Boston, MA • On-site

Full-time

Medical, Dental, Vision, Life, Retirement

Posted 4 days ago


Job description

Our Why At Dotmatics
At Dotmatics, we believe science, data, and decision-making must be deeply intertwined for innovation to thrive.
Our Portfolio includes Luma, LumaLab Connect, ELN Platform, Graphpad Prism, Geneious, SnapGene, Protein Metrics, OMIQ, FCS Express, LabArchives, NQuery, EasyPanel, MStar, SoftGenetics and Virscidian.
We have a vision for a new Lab of the Future that will change the future of scientific research.
We have created the world's most comprehensive digital science platform - best-of-breed software applications already used by more than 2 million scientists, together in a single ecosystem united by a powerful, flexible enterprise data platform. This is not flat data buried away in digital graveyards. This is dynamic, multi-dimensional decision-making.
Scientific enterprises need a new level of effectiveness to achieve tomorrow's breakthroughs. Illness will not wait. The biosphere will not wait. We are tireless in our vision, because the time for innovation is now.
Shaping the Future of Science At Dotmatics
Our global team of more than 800 colleagues are dedicated to supporting our customers in over 180 countries. Together, with our scientific community of users, we accelerate scientific innovation in order to make the world a healthier, cleaner, and safer place to live.
You'll join a collaborative, global team pushing the boundaries of scientific innovation. Your ideas and efforts will have a tangible impact, accelerating scientific progress and discovery. We offer a dynamic, remote-friendly environment that fosters high integrity and collaboration, empowering you to excel. Dotmatics is a company built by scientists, for scientists. Combined, we are now the world's largest cloud-based scientific research R&D platform. We need your help to keep growing and pioneering the future.
We are Science Driven. We are Customer Centric. We are Better Together.
What do we Need:
As a Staff Software Engineer, you will be the technical lead for the data processing and execution platform - a set of services that take user-initiated operations (data commits, transformations, workflows) and execute them reliably across shared compute infrastructure. This is a distributed, event-driven system with multiple services coordinating through asynchronous message passing.
This is no ordinary engineering role - this is working on a product with real world meaning - a product that helps define the way scientists works, helping bring medicine to market quicker, finding cures for diseases faster
This is LUMA
**This is a remote position, located in Mass. There will be some travel required to the office in Boston for team meetings and working sessions.**
In this role, you will:
  • Define and drive system architecture for event-driven data processing services, leading the migration of key components to a Node.js/TypeScript and Python ecosystem
  • Contribute to and improve engineering standards, patterns, and best practices for distributed systems, observability, and reliability across a multi-service platform coordinated through Kafka, GraphQL and RESTful APIs
  • Architect and implement asynchronous data processing pipelines for high-volume scientific data, with attention to at-least-once delivery guarantees, backpressure, and graceful degradation
  • Guarantee the scalability, maintainability, and security of software solutions running on Kubernetes and AWS
  • Take ownership of existing services, develop a deep understanding of their behavior, and make pragmatic decisions about how to evolve them

We are looking for candidates with 12+ years experience in engineering preferably in a SaaS environment, and ideally with a degree in Computer Science, Software Engineering, or equivalent.
The Key Skills we are looking for:
  • Language-agnostic engineering mindset - you pick up new languages and codebases quickly, reason about distributed system design independent of any single runtime, and can be productive in an unfamiliar stack within weeks
  • Advanced working experience in Asynchronous processing
  • Strong proficiency in Node.js/TypeScript and Python for building production backend services
  • Proven experience designing and implementing distributed, event-driven systems coordinated through message buses, GraphQL and RESTful APIs
  • Experience implementing automated testing platforms, unit tests, and integration tests
  • Advanced working experience with large data processing platforms such as Spark, Databricks, or Snowflake
  • Experience managing state across multiple stores (e.g. a message bus, a relational database, and a cache) and the consistency challenges that come with it
  • Hands-on experience with AWS in production environments and a solid understanding of Kubernetes for orchestrating workloads
  • Proficiency with CI/CD tools such as GitHub Actions
  • Knowledge of Agile software development practices
  • Setting technical direction, leading cross-team initiatives, and leveling up other engineers through mentoring and architectural guidance

You may also have experience in:
  • Scala or other JVM languages (helpful for understanding existing services during migration)
  • Message-based architectures using Kafka (consumer groups, partitioning, delivery semantics)
  • Background in complex data pipelines, schema management, and incremental processing
  • Exposure to AWS and/or GCP or designing systems portable across multiple cloud providers
  • Building scalable distributed systems using Kubernetes and other cloud-native technologies
  • Experience within Life Sciences or R&D data management

Why this role is interesting:
You're not maintaining a system in steady state. You're taking a complex, production-proven execution platform and leading its evolution - migrating to a new tech stack while keeping it running reliably for customers doing drug discovery. The system processes real scientific data through multi-step pipelines on shared compute infrastructure, with all the distributed systems challenges that implies: multi-tenancy, cancellation, crash recovery, and coordinating state across multiple data stores. If you enjoy understanding how complex systems actually work, regardless of what language they happen to be written in, and then making them better - this is the role.
Total Rewards
Dotmatics utilises a national market-based approach to base pay benchmarking and pay band development. The candidate's final starting pay is based on job-related skills, experience, job specific qualifications & location. In addition to base salary, Dotmatics has implemented a total rewards strategy, which is the combination of compensation, benefits and recognition.
Certain positions are also eligible for variable pay; your recruiter will discuss the full compensation package details.
Other Total Rewards Offered
  • Medical, Dental, Vision, Insurance
  • Health Spending Accounts
  • Wellness Benefits (Mental Health Apps and Fitness Perks)
  • Company-paid Life and Disability Insurance
  • 401k Retirement Plan (with 4% company match; immediate vesting)
  • Flexible Time off Plan (for US exempt employees)

This is the range that we, in good faith, believe is the range of possible compensation for this role at the time of this posting. We may ultimately pay more or less than the posted range. This range may be modified in the future.
Base Pay Range
$96,862-$196,574 USD
Research shows us the confidence gap and imposter syndrome can get in the way of meeting outstanding candidates, so please don't hesitate to apply - we'd love to hear from you.
By submitting your application, you agree that Dotmatics may collect your personal data for recruiting, global organization planning, and related purposes. Dotmatics Privacy Notice explains what personal information we may process, where we may process your personal information, our purposes for processing your personal information, and the rights you can exercise over Dotmatics use of your personal information.
Dotmatics is an equal opportunity employer. We are a welcoming place for everyone, and we do our best to make sure all people feel supported and connected at work.