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Payroll Systems Analyst Jobs in Rochester, NY (NOW HIRING)

Configure systems for annual benefit program changes or acquisitions. * Execute non-automated ... Manage workflows for carrier and payroll feed setup and maintenance. * Support sales and marketing ...

Senior Accountant

Rochester, NY · On-site

$80K - $90K/yr

This role emphasizes transactional accounting accuracy, reconciliations, payroll support, and ... Maintain and analyze general ledger accounts · Lead assigned month-end and year-end close ...

Position Overview The Account Manager II is pivotal in resolving client payroll and HR system ... Analytical thinking, problem solving, time management, communication and decision-making Preferred

Position Overview The Account Manager II is pivotal in resolving client payroll and HR system ... Analytical thinking, problem solving, time management, communication and decision-making Preferred

As the Account Manager, I play a pivotal role in resolving client payroll and HR system challenges ... Analytical thinking, problem-solving, time management, communication, and decision-making.

As the Account Manager, I play a pivotal role in resolving client payroll and HR system challenges ... Analytical thinking, problem-solving, time management, communication, and decision-making.

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Payroll Systems Analyst information

See Rochester, NY salary details

$17

$33

$53

How much do payroll systems analyst jobs pay per hour?

As of Aug 8, 2026, the average hourly pay for payroll systems analyst in Rochester, NY is $33.59, according to ZipRecruiter salary data. Most workers in this role earn between $26.35 and $37.26 per hour, depending on experience, location, and employer.

How does a payroll systems analyst typically interact with HR and Finance teams during payroll cycles?

A Payroll Systems Analyst plays a key collaborative role, working closely with both HR and Finance teams to ensure accurate and timely payroll processing. They gather and validate employee data from HR, troubleshoot discrepancies, and configure payroll system settings based on policy changes. Throughout the payroll cycle, they coordinate with Finance to reconcile payroll records, address compliance issues, and support audits. Strong communication and problem-solving skills are essential, as the analyst often serves as a bridge between technical system requirements and departmental needs.

What are the key skills and qualifications needed to thrive as a payroll systems analyst, and why are they important?

To thrive as a Payroll Systems Analyst, you need expertise in payroll processing, data analysis, and a solid understanding of HR and finance principles, typically supported by a bachelor’s degree in business, finance, or information systems. Familiarity with payroll software (such as ADP, SAP, or Workday), Excel, and relevant certifications like FPC or CPP are highly valued. Strong problem-solving skills, attention to detail, and effective communication abilities help ensure accurate payroll operations and successful collaboration across departments. These skills are crucial for maintaining compliance, preventing payroll errors, and optimizing system performance within organizations.

What does a payroll systems analyst do?

A Payroll Systems Analyst is responsible for managing, analyzing, and improving payroll software and systems within an organization. They ensure payroll processes are accurate, efficient, and compliant with regulations by configuring system settings, troubleshooting issues, and collaborating with HR and finance teams. Their role often includes testing new system features, providing user support, and implementing updates to keep payroll operations running smoothly.

What is the difference between Payroll Systems Analyst vs Payroll Specialist?

AspectPayroll Systems AnalystPayroll Specialist
Primary FocusAnalyzing and optimizing payroll software and systemsProcessing payroll and ensuring accurate employee payments
Required SkillsTechnical skills, system troubleshooting, data analysisPayroll processing, compliance, attention to detail
CertificationsPayroll certifications, HRIS system trainingPayroll certification, tax compliance training
Work EnvironmentIT departments, HR teams, payroll software vendorsHR departments, accounting teams, payroll departments

While Payroll Systems Analysts focus on managing and improving payroll software systems, Payroll Specialists handle the day-to-day payroll processing and employee payments. Both roles require payroll knowledge, but the analyst role emphasizes technical system expertise, whereas the specialist role emphasizes payroll administration and compliance.

What are the most commonly searched types of Payroll Systems Analyst jobs in Rochester, NY? The most popular types of Payroll Systems Analyst jobs in Rochester, NY are:
What are popular job titles related to Payroll Systems Analyst jobs in Rochester, NY? For Payroll Systems Analyst jobs in Rochester, NY, the most frequently searched job titles are:
What job categories do people searching Payroll Systems Analyst jobs in Rochester, NY look for? The top searched job categories for Payroll Systems Analyst jobs in Rochester, NY are:
What cities near Rochester, NY are hiring for Payroll Systems Analyst jobs? Cities near Rochester, NY with the most Payroll Systems Analyst job openings:
Infographic showing various Payroll Systems Analyst job openings in Rochester, NY as of August 2026, with employment types broken down into 85% Full Time, 9% Part Time, 5% Contract, and 1% Nights. Highlights an 89% Physical, 3% Hybrid, and 8% Remote job distribution, with an average salary of $69,859 per year, or $33.6 per hour.

Technical Business Analyst II - Sales Force and Genesys

Paychex

Rochester, NY • On-site, Remote

$85K - $133K/yr

Full-time

Medical, Retirement, PTO

Posted 7 days ago


Paychex rating

7.3

Company rating: 7.3 out of 10

Based on 175 frontline employees who took The Breakroom Quiz

219th of 483 rated business services


Job description

Paychex is reimagining how businesses manage their workforce by bringing payroll, HR, benefits, and advisory services together into a single connected HCM platform. As Paychex and Paycor come together, we're combining innovative technology, data-driven insights, AI, and human expertise to help organizations work smarter, support their people, and achieve better business outcomes. This is an exciting time to join our team as we continue to invest in innovation, simplify client experiences, and shape the future of work. At Paychex, you'll have the opportunity to grow your career, make a meaningful impact, and be part of something bigger as One Paychex.


Overview

Acts as a liaison among stakeholders, process owners and IT to provide strategic guidance for initiatives that enable the organization to achieve its goals. Includes independently working side-by-side with business process owners and key stakeholders to identify business process improvement opportunities, elicit business requirements, analyze and evaluate solutions options, and deliver business value through new system and process capabilities.


Responsibilities
  • Applies a high level of ingenuity and creativity in identifying and defining business needs for major technology research and business initiatives.
  • Recommends/drives alternative technical solutions and explores the adaptation of policies, procedures, standards, techniques, materials, and equipment to meet specific internal customer needs and provide the best practice technology solution.
  • When required, identifies appropriate vendor solutions for initiatives. Negotiates vendor statements of work and contracts to ensure that all team requirements are satisfied and cost are managed to expectations.
  • Manages the successful completion of major programs or projects. Generally acts as a project lead and may act as a Project Manager to ensure that project milestones, timelines and overall success criteria are achieved.
  • Proactively works with Program Architects to fulfill business objectives, resolves problem statements and supports architecture strategies.
  • May facilitate or lead Executive/Sr. Management level presentations to set expectations and provide clear and concise strategic direction.
  • Works with Business Units to define and document user stories/success criteria to support the business need.
  • Manages the activities of professional services resources ensuring quality of work and budget adherence.

Qualifications
  • Bachelor's Degree in IT/Business
  • 10+ years of experience in Systems or relevant Business Field experience or equivalent combination of education and experience.
  • Problem Solving - Preferred
  • Communication - Preferred
  • Information Technology - Preferred
  • Management - Preferred
  • Microsoft Office - Preferred
  • Business Analysis - Preferred
  • Business Requirements - Preferred
  • Project Management - Preferred
  • Computer Science - Preferred
  • Microsoft Visio - Preferred
  • Requirements Elicitation - Preferred
  • Acceptance Testing - Preferred
  • Business Systems - Preferred
  • Business Process - Preferred
  • Test Planning - Preferred

Compensation
In the spirit of pay transparency, we are excited to share that the starting base pay range for this position is $85,200 - $133,900 annually. Please keep in mind that this range is the base pay only and does not consider other components that make up the total rewards package for the position. If you are hired at Paychex, your overall compensation will be determined based on factors such as geographic location, skills, education, and/or experience which may result in total compensation outside of this range.
Live the Paychex Values
  • Act with uncompromising integrity.
  • Provide outstanding service and build trusted relationships.
  • Drive innovation in our products and services and continually improve our processes.
  • Work in partnership and support each other.
  • Be personally accountable and deliver on commitments.
  • Treat each other with respect and dignity.

  • What's in it for you?
    • We value your well-being: We provide over 21 comprehensive rewards, including medical coverage, virtual wellness classes, tuition reimbursement, 401(k) + employer match, adoption assistance, financial assistance, and much more.
    • We value your time: From paid time off to company holidays, culture days, and comprehensive work-life balance programs, we will ensure you have the flexibility you need to be your best.
    • We value your development: Our award-winning training and development programs empower our employees with ongoing learning opportunities to give you the building blocks to grow your career.
    • We value your perspective: Our company culture reflects the diversity of our employees. We want you to be you and your voice to be heard.
    • We value our communities: We offer paid time off for volunteerism and promote many company-wide and local initiatives that benefit organizations you care about.

    • Note: The benefits described apply to full-time employees. Benefits for part-time, contract, and intern roles may vary.

      Not sure if you meet every requirement?
      At Paychex, we know that great talent comes in many forms. If you're passionate about the role but don't check every box, we still encourage you to apply. You might be the right fit - either for this position or another opportunity with us.

      Paychex is an equal opportunity employer. We are committed to fostering a respectful and inclusive workplace where all individuals are treated fairly and evaluated based on their qualifications, experience, and merit. We comply with all applicable federal, state, and local laws prohibiting discrimination in employment.Qualifications:
      • Bachelor's Degree in IT/Business
      • 10+ years of experience in Systems or relevant Business Field experience or equivalent combination of education and experience.
      • Problem Solving - Preferred
      • Communication - Preferred
      • Information Technology - Preferred
      • Management - Preferred
      • Microsoft Office - Preferred
      • Business Analysis - Preferred
      • Business Requirements - Preferred
      • Project Management - Preferred
      • Computer Science - Preferred
      • Microsoft Visio - Preferred
      • Requirements Elicitation - Preferred
      • Acceptance Testing - Preferred
      • Business Systems - Preferred
      • Business Process - Preferred
      • Test Planning - Preferred
      Education:UNAVAILABLEEmployment Type: FULL_TIME

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    About Paychex

    Sourced by ZipRecruiter

    Consult with America's businesses, leveraging Paychex key referral channels and partnerships to educate stakeholders on our services, and provide consultative solutions to increase market share and drive revenue.

    Industry

    Human resources consulting services

    Company size

    10,000+ Employees

    Headquarters location

    Rochester, NY, US

    Year founded

    1971

    Social media