ZipRecruiter

Log In

1

Payroll Systems Analyst Jobs in Rochester, NY (NOW HIRING)

General Code

Payroll Analyst

Rochester, NY · On-site

$70K - $90K/yr

... system maintenance, upgrades, and testing Ø Prepare payroll-related reports for management ... skills. Ø Strong analytical and problem-solving capabilities. Ø Ability to maintain ...

General Code

Payroll Analyst

Rochester, NY · On-site

$70K - $90K/yr

The Payroll Analyst is responsible for ensuring accurate and timely processing of payroll while ... system maintenance, upgrades, and testing Ø Prepare payroll-related reports for management ...

General Code

Payroll Financial Analyst

Rochester, NY · On-site

$75K - $90K/yr

Proficiency with ERP and payroll systems. * Advanced Microsoft Excel and financial reporting skills. * High level of accuracy and attention to detail, analytical and problem-solving skills.

New

Paychex

Corporate Senior Payroll Specialist

Rochester, NY · On-site

$20.30 - $32.40/hr

... from the Analysts and Supervisor. * Maintains knowledge of the payroll processing system, changes in garnishment, wage and tax laws at the federal, state and level, voluntary and involuntary ...

Paychex

Corporate Senior Payroll Specialist

Rochester, NY · On-site +1

$20.30 - $32.40/hr

... from the Analysts and Supervisor. * Maintains knowledge of the payroll processing system, changes in garnishment, wage and tax laws at the federal, state and level, voluntary and involuntary ...

New

next page

Showing results 1-20

All JobsPayroll Systems Analyst JobsPayroll Systems Analyst Jobs in Rochester, NY

Payroll Systems Analyst information

See Rochester, NY salary details

$17

$33

$53

How much do payroll systems analyst jobs pay per hour?

As of Aug 8, 2026, the average hourly pay for payroll systems analyst in Rochester, NY is $33.59, according to ZipRecruiter salary data. Most workers in this role earn between $26.35 and $37.26 per hour, depending on experience, location, and employer.

How does a payroll systems analyst typically interact with HR and Finance teams during payroll cycles?

A Payroll Systems Analyst plays a key collaborative role, working closely with both HR and Finance teams to ensure accurate and timely payroll processing. They gather and validate employee data from HR, troubleshoot discrepancies, and configure payroll system settings based on policy changes. Throughout the payroll cycle, they coordinate with Finance to reconcile payroll records, address compliance issues, and support audits. Strong communication and problem-solving skills are essential, as the analyst often serves as a bridge between technical system requirements and departmental needs.

What are the key skills and qualifications needed to thrive as a payroll systems analyst, and why are they important?

To thrive as a Payroll Systems Analyst, you need expertise in payroll processing, data analysis, and a solid understanding of HR and finance principles, typically supported by a bachelor’s degree in business, finance, or information systems. Familiarity with payroll software (such as ADP, SAP, or Workday), Excel, and relevant certifications like FPC or CPP are highly valued. Strong problem-solving skills, attention to detail, and effective communication abilities help ensure accurate payroll operations and successful collaboration across departments. These skills are crucial for maintaining compliance, preventing payroll errors, and optimizing system performance within organizations.

What does a payroll systems analyst do?

A Payroll Systems Analyst is responsible for managing, analyzing, and improving payroll software and systems within an organization. They ensure payroll processes are accurate, efficient, and compliant with regulations by configuring system settings, troubleshooting issues, and collaborating with HR and finance teams. Their role often includes testing new system features, providing user support, and implementing updates to keep payroll operations running smoothly.

What is the difference between Payroll Systems Analyst vs Payroll Specialist?

AspectPayroll Systems AnalystPayroll Specialist
Primary FocusAnalyzing and optimizing payroll software and systemsProcessing payroll and ensuring accurate employee payments
Required SkillsTechnical skills, system troubleshooting, data analysisPayroll processing, compliance, attention to detail
CertificationsPayroll certifications, HRIS system trainingPayroll certification, tax compliance training
Work EnvironmentIT departments, HR teams, payroll software vendorsHR departments, accounting teams, payroll departments

While Payroll Systems Analysts focus on managing and improving payroll software systems, Payroll Specialists handle the day-to-day payroll processing and employee payments. Both roles require payroll knowledge, but the analyst role emphasizes technical system expertise, whereas the specialist role emphasizes payroll administration and compliance.

What are the most commonly searched types of Payroll Systems Analyst jobs in Rochester, NY? The most popular types of Payroll Systems Analyst jobs in Rochester, NY are:
What are popular job titles related to Payroll Systems Analyst jobs in Rochester, NY? For Payroll Systems Analyst jobs in Rochester, NY, the most frequently searched job titles are:
What job categories do people searching Payroll Systems Analyst jobs in Rochester, NY look for? The top searched job categories for Payroll Systems Analyst jobs in Rochester, NY are:
What cities near Rochester, NY are hiring for Payroll Systems Analyst jobs? Cities near Rochester, NY with the most Payroll Systems Analyst job openings:
Payroll Systems Analyst jobs near you
Infographic showing various Payroll Systems Analyst job openings in Rochester, NY as of August 2026, with employment types broken down into 85% Full Time, 9% Part Time, 5% Contract, and 1% Nights. Highlights an 89% Physical, 3% Hybrid, and 8% Remote job distribution, with an average salary of $69,859 per year, or $33.6 per hour.

Payroll Analyst

General Code Enterprises, LLC

Rochester, NY • On-site

$70K - $90K/yr

Other

Posted 18 days ago

Job description

Description

 The Payroll Analyst is responsible for ensuring accurate and timely processing of payroll while maintaining compliance with federal, state, and local regulations. This role analyzes payroll data, resolves discrepancies, supports audits, and works closely with HR, Finance, and external vendors to optimize payroll processes. 


Essential Functions:

Process and validate payroll for employee-bi-weekly

Review payroll data for accuracy, including hours worked, deductions, benefits, bonuses, and taxes

Analyze payroll reports and identify discrepancies or trends

Ensure compliance with company policies and applicable labor laws and tax regulations

Research and resolve payroll issues, including employee inquiries

Maintain payroll records and ensure proper documentation and audit readiness

Support internal and external audits related to payroll 

Collaborate with HR and Finance teams on compensation changes, new hires, terminations, and benefits updates

Reconcile payroll accounts and general ledger entries

Assist in payroll system maintenance, upgrades, and testing

Prepare payroll-related reports for management including budget vs. actual expenses, payroll accruals, commission statements, raise and budget detail

Identify opportunities for process improvements and automation

All other duties as assigned

Requirements

Essential Skills and Education/Experience:

Bachelor's degree in Accounting, Business Administration, Human Resources, or a related field. 

7-10 years of payroll experience, including hands-on payroll processing and compliance. 

Experience with payroll systems and reporting tools (e.g., Microsoft GP or similar ERP systems preferred). 

Strong knowledge of payroll processes, including tax compliance, reconciliations, and internal controls. 

Paylocity payroll system knowledge, preferred.

High level of accuracy, attention to detail, and organizational skills. 

Strong analytical and problem-solving capabilities. 

Ability to maintain confidentiality and handle sensitive information.

Proficiency in Microsoft Office Suite, particularly Excel. 

Strong communication and collaboration skills across departments.

Experience managing multi-state payroll operations.

Support system implementations, upgrades, or process improvement projects.

Physical Requirements: 

Ability to sit for extended periods while working at a computer or desk 

Occasional standing, walking, and reaching to access files or office supplies 

Manual dexterity for typing, filing, and handling office equipment 

Ability to lift and carry up to 20 pounds occasionally (e.g., office supplies, documents) 

Visual acuity to read printed and digital materials 

Auditory ability to communicate effectively in person and over the phone 

May need to climb stairs in multi-level office building 

Environmental Conditions:

Indoor Office Environment

Must be able to work in standard office environment with artificial lighting and climate control 

Apply