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Payroll Systems Analyst Jobs in Rochester, NY (NOW HIRING)

Paychex

Corporate Payroll Tax Analyst

Rochester, NY · Remote

$56K - $88K/yr

Performs statistical analysis to identify, qualify, quantify, and validate payroll tax data from ... Audits output from patching to ensure the system is updated and compliant with tax changes.

BENE-CARE

Bene-Care: Payroll Specialist

Webster, NY · On-site

$45K - $55K/yr

... system, and compliance issues in a timely and effective manner. · Train clients on the use of ... strong analytical and research capabilities. · Professionalism in handling sensitive and ...

Bene-CARE

Bene-Care: Payroll Specialist

Webster, NY · On-site

$55K/yr

... system, and compliance issues in a timely and effective manner. · Train clients on the use of ... strong analytical and research capabilities. · Professionalism in handling sensitive and ...

BENE-CARE

Bene-Care: Payroll Specialist

Webster, NY · On-site

$45K - $55K/yr

... system, including new hires, deductions, tax updates, etc. • Collaborate with internal ... strong analytical and research capabilities. • Professionalism in handling sensitive and ...

M&T Bank

Payroll Specialist

Rochester, NY · Hybrid

$20.55 - $34.25/hr

Responsible for supporting biweekly payroll function in the HR system, focusing on accuracy ... Proven analytical skills * Proven problem-solving skills * Proven verbal and written communication ...

Mindex

Data Architect - Remote

Rochester, NY · Remote

$120K - $173K/yr

... HRIS, payroll, client systems, and other domains into a consistent, reusable framework that supports analytics, reporting, artificial intelligence, and other data-driven initiatives. You will also ...

Mindex

Data Architect - Remote

Rochester, NY · Remote

$120K - $173K/yr

... HRIS, payroll, client systems, and other domains into a consistent, reusable framework that supports analytics, reporting, artificial intelligence, and other data-driven initiatives. You will also ...

Seal & Design

Human Resources Generalist

Rochester, NY · On-site

$65K - $75K/yr

Proficiency with HRIS and payroll systems and strong working knowledge of the Microsoft Office ... Analytical and problemsolving skills , with the ability to manage multiple priorities and adapt to ...

Pwc

SAP Human Capital Payroll - Director

Rochester, NY · On-site

$155K - $410K/yr

These individuals analyse client needs, implement software solutions, and provide training and ... Make strategic choices and drive change by addressing system-level enablers. Promote technological ...

Gorbel, Inc.

Compensation & Benefits Analyst

Victor, NY · On-site

$67K - $83K/yr

We operate in Canada as Engineered Lifting Systems and Equipment (ELS)/DBA Gorbel ® Canada, and ... This role partners closely with Human Resources, Recruiting, Payroll, Finance, and external vendors ...

Gorbel

Compensation & Benefits Analyst

Victor, NY

$67K - $83K/yr

We operate in Canada as Engineered Lifting Systems and Equipment (ELS)/DBA Gorbel Canada, and ... This role partners closely with Human Resources, Recruiting, Payroll, Finance, and external vendors ...

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Payroll Systems Analyst information

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How much do payroll systems analyst jobs pay per hour?

As of Jul 18, 2026, the average hourly pay for payroll systems analyst in Rochester, NY is $33.59, according to ZipRecruiter salary data. Most workers in this role earn between $26.35 and $37.26 per hour, depending on experience, location, and employer.

How does a Payroll Systems Analyst typically interact with HR and Finance teams during payroll cycles?

A Payroll Systems Analyst plays a key collaborative role, working closely with both HR and Finance teams to ensure accurate and timely payroll processing. They gather and validate employee data from HR, troubleshoot discrepancies, and configure payroll system settings based on policy changes. Throughout the payroll cycle, they coordinate with Finance to reconcile payroll records, address compliance issues, and support audits. Strong communication and problem-solving skills are essential, as the analyst often serves as a bridge between technical system requirements and departmental needs.

What are the key skills and qualifications needed to thrive as a Payroll Systems Analyst, and why are they important?

To thrive as a Payroll Systems Analyst, you need expertise in payroll processing, data analysis, and a solid understanding of HR and finance principles, typically supported by a bachelor’s degree in business, finance, or information systems. Familiarity with payroll software (such as ADP, SAP, or Workday), Excel, and relevant certifications like FPC or CPP are highly valued. Strong problem-solving skills, attention to detail, and effective communication abilities help ensure accurate payroll operations and successful collaboration across departments. These skills are crucial for maintaining compliance, preventing payroll errors, and optimizing system performance within organizations.

What does a Payroll Systems Analyst do?

A Payroll Systems Analyst is responsible for managing, analyzing, and improving payroll software and systems within an organization. They ensure payroll processes are accurate, efficient, and compliant with regulations by configuring system settings, troubleshooting issues, and collaborating with HR and finance teams. Their role often includes testing new system features, providing user support, and implementing updates to keep payroll operations running smoothly.

What is the difference between Payroll Systems Analyst vs Payroll Specialist?

AspectPayroll Systems AnalystPayroll Specialist
Primary FocusAnalyzing and optimizing payroll software and systemsProcessing payroll and ensuring accurate employee payments
Required SkillsTechnical skills, system troubleshooting, data analysisPayroll processing, compliance, attention to detail
CertificationsPayroll certifications, HRIS system trainingPayroll certification, tax compliance training
Work EnvironmentIT departments, HR teams, payroll software vendorsHR departments, accounting teams, payroll departments

While Payroll Systems Analysts focus on managing and improving payroll software systems, Payroll Specialists handle the day-to-day payroll processing and employee payments. Both roles require payroll knowledge, but the analyst role emphasizes technical system expertise, whereas the specialist role emphasizes payroll administration and compliance.

What are the most commonly searched types of Payroll Systems Analyst jobs in Rochester, NY? The most popular types of Payroll Systems Analyst jobs in Rochester, NY are:
What are popular job titles related to Payroll Systems Analyst jobs in Rochester, NY? For Payroll Systems Analyst jobs in Rochester, NY, the most frequently searched job titles are:
What job categories do people searching Payroll Systems Analyst jobs in Rochester, NY look for? The top searched job categories for Payroll Systems Analyst jobs in Rochester, NY are:
What cities near Rochester, NY are hiring for Payroll Systems Analyst jobs? Cities near Rochester, NY with the most Payroll Systems Analyst job openings:
Payroll Systems Analyst jobs near you
Senior Payroll Analyst

Senior Payroll Analyst

Heritage Christian Services

Rochester, NY • On-site

$33.72/hr

Other

Re-posted 13 days ago

Heritage Christian Services rating

5.6

Company rating: 5.6 out of 10

Based on 15 frontline employees who took The Breakroom Quiz

Job description

Overview

The Senior Payroll Analyst is a senior individual contributor responsible for executing complex payroll tasks, performing reconciliations, supporting reporting, and assisting with payroll system administration, and ensuring payroll accuracy and compliance across the organization. This role supports the Payroll Lead operationally, serves as a backup functional lead when needed, and provides mentorship and guidance to Payroll Specialists and other team members on payroll processes, system use, and best practices. The Senior Payroll Analyst collaborates with HR, Finance, and other cross-functional partners to interpret payroll data, resolve issues, and contribute to continuous payroll process improvement.

Pay for this position:  $ 29.99 / hr - $33.72 / hr

The salary of the finalist selected for this role will be set based on a variety of factors, including but not limited to departmental budgets, qualifications, experience, education, licenses, specialty, and training. The above range represents the organization's good faith and reasonable estimate of the range of possible compensation at the time of posting

Responsibilities
  • Process and reconcile payroll for multiple pay cycles, handling complex calculations, deductions, and adjustments.
  • Perform payroll reconciliations and assist with reporting requirements.
  • Support ADP system administration and configuration.
  • Maintain documentation of payroll processes, policies, and procedures.
  • Assist with payroll audits and regulatory compliance efforts.
  • Serve as a backup to the Payroll Lead on payroll functions as needed.
  • Identify opportunities to improve payroll processes and efficiency.
  • Performs other duties as required to support payroll operations.
Qualifications
  • 5-10 years of progressive payroll experience, with advanced technical knowledge of payroll systems, preferably ADP.
  • Demonstrated expertise in payroll processing, reporting, and compliance, including federal, state, and local requirements.
  • Excellent verbal and written communication skills for cross-functional collaboration.
  • Processes complex data sets with precision and thoroughness in high-volume environments while effectively managing time to meet deadlines and prioritize competing tasks.
  • Strong analytical, organizational and problem-solving skills; able to interpret data and identify discrepancies.
  • Excellent interpersonal skills to collaborate with HR, Finance, and internal partners.
  • Commitment to handle confidential information with discretion.
  • Demonstrated ability to provide outstanding customer service to internal and external stakeholders.
  • Strong Microsoft Office Suite skills required; intermediate Excel skills preferred.
  • Experience leveraging Microsoft Copilot or similar AI tools to automate payroll processes, enhance reporting, and improve efficiency.
  • Bachelor's degree preferred but not required; equivalent combination of experience and training will be considered. High School equivalency is required. 
  • Payroll certifications such as Certified Payroll Professional (CPP) a plus but not required, demonstrating professional commitment and expertise.

Our Commitment to Equity and Justice

 

We believe that people are entitled to dignity, respect, equity and justice. We champion a society that removes barriers. We reject racism and discrimination of any kind. We protest systemic and political inequities that marginalize people, recognizing that there is a history of structural racism in the United States. We will continue to learn and change to achieve justice. We know that strength comes from unity.

Employment Type: OTHER

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