As a Bioinformatics Software Engineer at AccuraGen, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. Your ...
As a Bioinformatics Software Engineer at AccuraGen, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. Your ...
Bioinformatics Engineer, Pipelines
San Francisco, CA · On-site
$150K - $200K/yr
You will architect Nextflow and nf-core style pipelines, implement modality-specific validation and QC layers, and collaborate with the Tabular Data Team and Knowledge Curation Team to ensure ...
Bioinformatics Engineer, Pipelines
San Francisco, CA · On-site
$150K - $200K/yr
You will architect Nextflow and nf-core style pipelines, implement modality-specific validation and QC layers, and collaborate with the Tabular Data Team and Knowledge Curation Team to ensure ...
As a Bioinformatics Software Engineer at AccuScan Sciences, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems.
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Apply Early
As a Bioinformatics Software Engineer at AccuScan Sciences, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems.
Apply Early
As a Bioinformatics Software Engineer at AccuScan Sciences, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems.
As a Bioinformatics Software Engineer at AccuScan Sciences, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems.
Bioinformatics Engineer, Pipelines
San Francisco, CA · On-site
$150K - $200K/yr
You will architect Nextflow and nf-core style pipelines, implement modality-specific validation and QC layers, and collaborate with the Tabular Data Team and Knowledge Curation Team to ensure ...
Quick apply
Apply Early
Bioinformatics Engineer, Pipelines
San Francisco, CA · On-site
$150K - $200K/yr
You will architect Nextflow and nf-core style pipelines, implement modality-specific validation and QC layers, and collaborate with the Tabular Data Team and Knowledge Curation Team to ensure ...
Apply Early
This role will focus on GCP engineering, Python automation, ETL/data pipelines, Docker containerization, CI/CD, Terraform, and workflow or lab orchestration platforms such as Mendix, NAN, Nextflow ...
Quick apply
This role will focus on GCP engineering, Python automation, ETL/data pipelines, Docker containerization, CI/CD, Terraform, and workflow or lab orchestration platforms such as Mendix, NAN, Nextflow ...
Azure DevOps Engineer - Laboratory & HPC Systems
Boston, MA · On-site
$57.25 - $78.50/hr
Work with containerized bioinformatics tools (Docker, Singularity) and workflow engines such as Nextflow, Snakemake, or WDL * Maintain data lifecycle management for large genomic datasets including ...
Azure DevOps Engineer - Laboratory & HPC Systems
Boston, MA · On-site
$57.25 - $78.50/hr
Work with containerized bioinformatics tools (Docker, Singularity) and workflow engines such as Nextflow, Snakemake, or WDL * Maintain data lifecycle management for large genomic datasets including ...
Research Assistant (part-time) - Eveland
Olivette, MO · On-site
$18 - $24.75/hr
Support the development and implementation of Nextflow pipelines. * Document computational procedures, results, and observations accurately and systematically. * Collaborate with team members to ...
Research Assistant (part-time) - Eveland
Olivette, MO · On-site
$18 - $24.75/hr
Support the development and implementation of Nextflow pipelines. * Document computational procedures, results, and observations accurately and systematically. * Collaborate with team members to ...
Sr HPC Engineer
$96K - $132K/yr
The ideal candidate combines strong systems engineering skills with bioinformatics domain knowledge and has proven experience managing petabyte-scale storage, workflow orchestration (e.g., Nextflow ...
Sr HPC Engineer
$96K - $132K/yr
The ideal candidate combines strong systems engineering skills with bioinformatics domain knowledge and has proven experience managing petabyte-scale storage, workflow orchestration (e.g., Nextflow ...
Sr HPC Engineer
Houston, TX · On-site
$96K - $132K/yr
The ideal candidate combines strong systems engineering skills with bioinformatics domain knowledge and has proven experience managing petabyte-scale storage, workflow orchestration (e.g., Nextflow ...
Sr HPC Engineer
Houston, TX · On-site
$96K - $132K/yr
The ideal candidate combines strong systems engineering skills with bioinformatics domain knowledge and has proven experience managing petabyte-scale storage, workflow orchestration (e.g., Nextflow ...
Research Assistant (part-time) - Eveland
Olivette, MO · On-site
$18 - $24.75/hr
Support the development and implementation of Nextflow pipelines. * Document computational procedures, results, and observations accurately and systematically. * Collaborate with team members to ...
Research Assistant (part-time) - Eveland
Olivette, MO · On-site
$18 - $24.75/hr
Support the development and implementation of Nextflow pipelines. * Document computational procedures, results, and observations accurately and systematically. * Collaborate with team members to ...
... e.g., Nextflow) 10+ years in Slurm workload manager installation, configuration, and job troubleshooting 10+ years in cluster and storage management, including NAS (Qumulo), rsync, and mount ...
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Apply Early
... e.g., Nextflow) 10+ years in Slurm workload manager installation, configuration, and job troubleshooting 10+ years in cluster and storage management, including NAS (Qumulo), rsync, and mount ...
Apply Early
Sr HPC Engineer
Houston, TX · On-site
$96K - $132K/yr
The ideal candidate combines strong systems engineering skills with bioinformatics domain knowledge and has proven experience managing petabyte-scale storage, workflow orchestration (e.g., Nextflow ...
Quick apply
Apply Early
Sr HPC Engineer
Houston, TX · On-site
$96K - $132K/yr
The ideal candidate combines strong systems engineering skills with bioinformatics domain knowledge and has proven experience managing petabyte-scale storage, workflow orchestration (e.g., Nextflow ...
Apply Early
Associate Scientist - Bioinformatics V
Foster City, CA · On-site
$60 - $80.50/hr
Productionize workflows (Nextflow/Snakemake/WDL) with containers (Docker/Singularity) across on prem HPC and AWS;produce clear reports, docs, and release packages. Required Qualifications PhD in ...
Associate Scientist - Bioinformatics V
Foster City, CA · On-site
$60 - $80.50/hr
Productionize workflows (Nextflow/Snakemake/WDL) with containers (Docker/Singularity) across on prem HPC and AWS;produce clear reports, docs, and release packages. Required Qualifications PhD in ...
Build and maintain NGS analysis pipelines (e.g., Nextflow) to support quality control and performance tracking of synthetic biology products. * Leverage Oxford Nanopore Technologies (ONT), Illumina ...
Build and maintain NGS analysis pipelines (e.g., Nextflow) to support quality control and performance tracking of synthetic biology products. * Leverage Oxford Nanopore Technologies (ONT), Illumina ...
NGS Pipeline Development & Data Science Build and maintain NGS analysis pipelines (e.g., Nextflow) to support quality control and performance tracking of synthetic biology products Leverage Oxford ...
NGS Pipeline Development & Data Science Build and maintain NGS analysis pipelines (e.g., Nextflow) to support quality control and performance tracking of synthetic biology products Leverage Oxford ...
Build and maintain NGS analysis pipelines (e.g., Nextflow) to support quality control and performance tracking of synthetic biology products. * Leverage Oxford Nanopore Technologies (ONT), Illumina ...
Build and maintain NGS analysis pipelines (e.g., Nextflow) to support quality control and performance tracking of synthetic biology products. * Leverage Oxford Nanopore Technologies (ONT), Illumina ...
Principal Software Engineer
$138K - $185K/yr
AWS, Kubernetes, Python, Go, Groovy, Terraform, Helm, Nextflow, WDL, Django, React. • You think in terms of business and user problems, not tickets. You ask 'should we build this?' before 'how do I ...
New
Principal Software Engineer
$138K - $185K/yr
AWS, Kubernetes, Python, Go, Groovy, Terraform, Helm, Nextflow, WDL, Django, React. • You think in terms of business and user problems, not tickets. You ask 'should we build this?' before 'how do I ...
New
Familiarity with Nextflow/NextFlow Tower/Seqera Platform preferred. * Laboratory informatics experience with Benchling or comparable ELN/LIMS, as an operator, builder, or administrator. * AI / LLM ...
Familiarity with Nextflow/NextFlow Tower/Seqera Platform preferred. * Laboratory informatics experience with Benchling or comparable ELN/LIMS, as an operator, builder, or administrator. * AI / LLM ...
NextFlow, Luigi, Snakemake, NextFlow preferred), version control systems (Git preferred), Cloud (AWS preferred) and containers (Docker preferred) * Experience with Computer System Validation ...
NextFlow, Luigi, Snakemake, NextFlow preferred), version control systems (Git preferred), Cloud (AWS preferred) and containers (Docker preferred) * Experience with Computer System Validation ...
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Job description
As a Bioinformatics Software Engineer at AccuraGen, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. Your contributions will directly impact innovative scientific discoveries and product development. You'll collaborate closely with scientists, engineers, and researchers, contributing your technical expertise to streamline processes, maintain automation, and drive our bioinformatics capabilities forward.
Responsibilities:
- Design, implement, and develop tests and documentation for established robust bioinformatics pipelines.
- Optimize computational workflows for high-performance execution and reproducible data analysis.
- Maintain, monitor, and improve pipeline automation to ensure smooth operational workflows.
- Manage GitHub repositories, oversee version control, and streamline the software release process.
- Develop and manage infrastructure on AWS to ensure scalability, reliability, and efficiency.
- Collaborate with cross-functional teams to integrate bioinformatics solutions.
- Proactively identify opportunities to enhance infrastructure efficiency and security.
Requirements
Qualifications:
- Bachelor's degree or higher in Bioinformatics, Computational Biology, Computer Science, or a related field. with at least 3+ years of working experience out of college.
- Experience with bioinformatics workflow development and optimization, particularly using Nextflow.
- Experience developing software following best practices, including comprehensive testing and clear documentation.
- Proficiency in scripting languages (Python, Bash) and familiarity with container technologies (Docker, Kubernetes).
- Hands-on experience with AWS cloud computing services (EC2, S3, Batch, Lambda).
- Excellent communication and collaborative skills.
Preferred Qualifications:
- Familiarity with CI/CD practices.
- Experience with infrastructure-as-code (Terraform, CloudFormation).
Benefits
- Health Care Plan (Medical, Dental & Vision)
- Retirement Plan (401k, IRA)
- Paid Time Off (Vacation, Sick & Public Holidays)
About Accuragen
Sourced by ZipRecruiter
Industry
Biotechnology research and development
Company size
11 - 50 Employees
Headquarters location
Menlo Park, CA, US
Year founded
2013