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Nextflow Jobs in Boston, MA (NOW HIRING)

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IT Data Engineer - BB4352

Cambridge, MA · On-site

$70 - $95/hr

  • Medical

  • Dental

  • Vision

We are seeking a highly skilled IT Data Engineer with expertise in Databricks , Seqera Platform (Nextflow Tower) , cloud data engineering, and scientific data workflows to support our Discovery R&D ...

Familiarity with Nextflow/NextFlow Tower/Seqera Platform preferred. * Laboratory informatics experience with Benchling or comparable ELN/LIMS, as an operator, builder, or administrator. * AI / LLM ...

Cloud Infrastructure/AI/ML Engineer

Boston, MA · On-site

$116K - $153K/yr

... Nextflow is a plus) - Education : MS or PhD required - Communication : Strong communication skills are essential - Visa/Employment : - All visa types accepted (including H1B, EAD-GC, L2 EAD, H4-EAD ...

Informatics Engineer

Cambridge, MA · On-site

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

Familiarity with Nextflow/NextFlow Tower/Seqera Platform preferred. * Laboratory informatics experience with Benchling or comparable ELN/LIMS, as an operator, builder, or administrator. * AI / LLM ...

Senior Scientist, Bioinformatics

Waltham, MA · On-site

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

Wrap and orchestrate tools into portable, versioned workflows using Nextflow or Snakemake. * Develop tools and workflows with the interfaces, metadata, and execution standards needed to support reuse ...

Machine Learning Data Engineer (AIM2)

Cambridge, MA · On-site

$106K - $176K/yr

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

Developing, deploying, and operating productiongrade Nextflow pipelines on cloud infrastructure, ensuring scalable and reproducible execution. * Owning pipeline lifecycle management, including ...

Senior Scientist, Bioinformatics

Waltham, MA · On-site +1

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

Wrap and orchestrate tools into portable, versioned workflows using Nextflow or Snakemake. * Develop tools and workflows with the interfaces, metadata, and execution standards needed to support reuse ...

Senior Scientist, Bioinformatics

Waltham, MA · On-site

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

Wrap and orchestrate tools into portable, versioned workflows using Nextflow or Snakemake. * Develop tools and workflows with the interfaces, metadata, and execution standards needed to support reuse ...

Machine Learning Data Engineer (AIM2)

Cambridge, MA · On-site

$106K - $176K/yr

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

Developing, deploying, and operating production-grade Nextflow pipelines on cloud infrastructure, ensuring scalable and reproducible execution. * Owning pipeline lifecycle management, including ...

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Knowledge of Seqera, Nextflow, or scientific computing platforms is a plus. Desired Skills * SAS Programming * SAS Macro Development * Utility Macros * AWS Cloud Infrastructure * Infrastructure ...

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required.Sequencing Data:

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

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Infographic showing various Nextflow job openings in Boston, MA as of August 2026, with employment types broken down into 55% Full Time, 20% Part Time, 6% Temporary, and 19% Contract. Highlights an 91% In-person, and 9% Remote job distribution.

IT Data Engineer (Seqera Platform OR Nextflow)

Radiant System, Inc

Cambridge, MA • On-site

$125K - $150K/yr

Other

Posted 12 days ago


Job description

We are seeking an experienced IT Data Engineer with expertise in Databricks, Apache Spark (PySpark), AWS, and Seqera Platform (Nextflow Tower) to build and maintain scalable cloud-based data platforms and scientific data pipelines.

Required Skills:

  • 5+ years of Data Engineering experience
  • 3+ years of Databricks and Apache Spark (PySpark)
  • 2+ years of Seqera Platform (Nextflow Tower) and Nextflow
  • Strong experience with AWS (S3, EC2, IAM, Lambda)
  • SQL and Python
  • Delta Lake, Delta Live Tables (DLT), Unity Catalog
  • Docker, Kubernetes
  • Terraform or CloudFormation
  • ETL/ELT pipelines and Data Lake/Lakehouse architecture
  • Experience in Life Sciences, Pharma, Biotech, or Healthcare is preferred