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Manager Nonprofit Controller Jobs in Rochester, NY

Lollypop Farm

Medical Director

Fairport, NY · On-site

$170K - $180K/yr

As a registered 501(c)(3) nonprofit organization, eligible full-time employees may qualify for the ... Provide direct management and support to staff Veterinarians, Veterinary Interns/Externs, volunteer ...

Memorial Hermann

Life Flight Pilot

Pavilion, NY · On-site

As non-profit hospital-based program, all aviation and medical employees work directly for Memorial ... controllers. * Inspects all major mechanical, operational, and control systems, as well as all ...

All JobsNonprofit Controller JobsManager Nonprofit Controller JobsManager Nonprofit Controller Jobs in Rochester, NY

Manager Nonprofit Controller information

See Rochester, NY salary details

$18.7K

$55.2K

$96.7K

How much do manager nonprofit controller jobs pay per year?

As of Jul 26, 2026, the average yearly pay for manager nonprofit controller in Rochester, NY is $55,206.00, according to ZipRecruiter salary data. Most workers in this role earn between $37,500.00 and $59,200.00 per year, depending on experience, location, and employer.

How does a Manager Nonprofit Controller typically collaborate with program and development teams within an organization?

A Manager Nonprofit Controller works closely with program and development teams to ensure that financial planning, budgeting, and reporting align with the organization's mission and fundraising goals. They provide financial insights to help evaluate program effectiveness and support grant compliance by tracking restricted funds and reporting requirements. Regular meetings and open communication are common, fostering a collaborative environment where financial and programmatic objectives are synchronized for optimal impact.

What are the key skills and qualifications needed to thrive as a Manager Nonprofit Controller, and why are they important?

To thrive as a Manager Nonprofit Controller, you need expertise in nonprofit accounting, financial reporting, and budgeting, generally supported by a bachelor’s degree in accounting or finance and relevant experience. Familiarity with accounting software such as QuickBooks Nonprofit, Blackbaud, or Sage Intacct, and often a CPA certification, is highly valued. Strong leadership, attention to detail, and effective communication skills set top candidates apart in this role. These skills ensure accurate financial oversight, compliance with nonprofit regulations, and sound decision-making to support the organization’s mission.

What is a Manager Nonprofit Controller?

A Manager Nonprofit Controller is a financial leader responsible for overseeing the accounting and financial reporting functions of a nonprofit organization. They ensure compliance with accounting standards and regulatory requirements specific to nonprofits, manage budgets, prepare financial statements, and may oversee audits. Additionally, they work closely with executive leadership to inform financial strategy, monitor grant funding, and support the organization's mission through sound fiscal management.

What is the difference between Manager Nonprofit Controller vs Bookkeeper?

AspectManager Nonprofit ControllerBookkeeper
CredentialsAccounting degree, CPA preferredHigh school diploma or equivalent
ResponsibilitiesFinancial oversight, budgeting, financial reportingRecording transactions, maintaining ledgers
Work EnvironmentNonprofit organizations, finance departmentsAccounting firms, small nonprofits
Industry UsageCommon in nonprofit sectorWidespread across industries

The Manager Nonprofit Controller oversees financial management, budgeting, and reporting within nonprofit organizations, requiring advanced accounting skills and certifications. In contrast, a Bookkeeper handles day-to-day transaction recording with less emphasis on strategic financial planning. The Controller role is more senior and analytical, while Bookkeeping is more operational and clerical.

What are the most commonly searched types of Nonprofit Controller jobs in Rochester, NY? The most popular types of Nonprofit Controller jobs in Rochester, NY are:
What are popular job titles related to Manager Nonprofit Controller jobs in Rochester, NY? For Manager Nonprofit Controller jobs in Rochester, NY, the most frequently searched job titles are:
What job categories do people searching Manager Nonprofit Controller jobs in Rochester, NY look for? The top searched job categories for Manager Nonprofit Controller jobs in Rochester, NY are:
What cities near Rochester, NY are hiring for Manager Nonprofit Controller jobs? Cities near Rochester, NY with the most Manager Nonprofit Controller job openings:
Manager Nonprofit Controller jobs near you
Assistant Controller - (Senior Accounting Consultant)

Assistant Controller - (Senior Accounting Consultant)

Insero & Co. CPAs, LLP

Rochester, NY • Hybrid

$72K - $95K/yr

Full-time

Retirement, PTO

Posted 16 days ago

Job description

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Assistant Controller (CAS Senior Accountant\/Supervisor)<\/b>
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Rochester, NY | Full\-Time or Part\-Time
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Join Insero's Client Accounting Services (CAS) team and enjoy meaningful client work, schedule flexibility, and a variety of projects supporting a variety of organizations. If you want a role where every day looks different-and your expertise has real impact-this is it.
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Client Accounting Services: <\/b>Our Client Accounting Services Group has been around for over 20 years and is made up of dedicated personnel whose only assignments are supporting our client base. We are full\-time CPAs, CMAs, Accountants and Business Managers. We understand the issues that Controllers and CFOs face every day - and our technology, experience and flexibility add real value. Accounting Consulting for us is not something that fills our downtime; it is our focus all year long. Our services range from bookkeeping to budgeting and forecasting. Our Client Accounting Services Team ensures our clients have the information and advice they require to run their business\/organization.
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What You'll Do<\/b>
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  • Lead\/support fullaccrual monthend close, journal entries, reconciliations, A\/P, A\/R, payroll, and financial reporting.
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  • Analyze and clean up general ledger activity to ensure accuracy.
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  • Assist with cash flow, disclosures, budgeting, and annual planning.
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  • Communicate directly with clients and coordinate with auditors and external partners.
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  • Improve processes, strengthen internal controls, and help upgrade or implement accounting systems.
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  • Supervise staff as needed.
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    Requirements<\/h3>

    What You Bring<\/b>
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    • Associate's in Accounting required; Bachelor's preferred.
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    • 4+ years accounting experience with nonprofit exposure (industry or public).
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    • Strong monthend close and reconciliation skills.
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    • Experience with QuickBooks Online, Intacct, and Bill.com strongly preferred.
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    • Excellent communication, client service mindset, and the ability to manage multiple engagements.
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    • CPA\/CMA a plus.
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      Compensation<\/b>
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      $72,000-$95,000 base salary, depending on experience. Additional discretionary bonus opportunities available.
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      Benefits<\/h3>

      Why Insero<\/b>
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      • 4-5 weeks PTO + 16 paid holidays
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      • Remote\/hybrid flexibility
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      • 401(k) with firm contributions
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      • Tuition reimbursement program
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      • Robust benefits offerings
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      • Spot bonuses, CPA bonus, training & technology investment
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      • Ranked the #1 Best Company <\/span><\/b>to Work For in New York in the Medium Companies category (State, NYS\-SHRM and Best Companies Group) 2025 & 2024, ranked #3 in 2023 and again #1 in 2022.<\/span><\/b><\/span>
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      • Best Accounting Firms to Work For (National, Accounting Today and Best Companies Group) 2012\-2025.<\/span>
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      • #1 Best Accounting Firm, Reader Rankings (Local, Rochester Business Journal) 2023\-2026, consistently ranked since joining<\/span><\/b><\/i> <\/span><\/b>in 2018.<\/span>
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        At Insero, we believe in being passionate about people, delivering excellence, growing to new heights, and going further together. If these values resonate with you, we encourage you to apply!
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        Insero is an Equal Opportunity Employer.
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