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Remote Nonprofit Controller Jobs in Rochester, NY

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Remote Nonprofit Controller information

See Rochester, NY salary details

$54.3K

$117.9K

$173.2K

How much do remote nonprofit controller jobs pay per year?

As of Jul 26, 2026, the average yearly pay for remote nonprofit controller in Rochester, NY is $117,904.00, according to ZipRecruiter salary data. Most workers in this role earn between $95,700.00 and $136,700.00 per year, depending on experience, location, and employer.

What is the difference between Remote Nonprofit Controller vs Remote Nonprofit Accountant?

AspectRemote Nonprofit ControllerRemote Nonprofit Accountant
CredentialsCPA or equivalent, accounting degreeAccounting degree, CPA preferred but not required
Work EnvironmentOversees financial strategy, manages accounting teamHandles day-to-day bookkeeping, prepares financial reports
Employer & Industry UsageNonprofit organizations, often in leadership rolesNonprofits, supporting financial record-keeping
Search & Comparison IntentUnderstanding strategic financial managementFocus on accounting tasks and compliance

The Remote Nonprofit Controller typically holds a CPA and manages financial strategy and oversight, while the Remote Nonprofit Accountant focuses on daily bookkeeping and reporting. Both roles are essential in nonprofit finance but differ in scope and responsibilities.

What is a Remote Nonprofit Controller?

A Remote Nonprofit Controller is a financial professional who manages the accounting and financial reporting functions for a nonprofit organization while working remotely. They are responsible for overseeing budgets, preparing financial statements, ensuring compliance with regulations, and supporting the executive team in financial decision-making. Their work helps maintain transparency and accountability in the organization's use of funds, even though they do not work on-site. Remote Nonprofit Controllers often use cloud-based accounting systems and digital communication tools to collaborate with team members.

How does a Remote Nonprofit Controller effectively collaborate with program staff and executive leadership to ensure accurate financial reporting?

As a Remote Nonprofit Controller, you will frequently collaborate with program managers and executive leadership through regular virtual meetings and cloud-based financial systems. You’ll be responsible for translating program activities into accurate financial data, clarifying budget variances, and providing guidance on fiscal compliance. Effective communication skills and proficiency with collaborative financial software are essential, as you’ll often need to explain complex financial concepts to non-financial colleagues and support strategic decision-making across the organization.

What are the key skills and qualifications needed to thrive as a Remote Nonprofit Controller, and why are they important?

To thrive as a Remote Nonprofit Controller, you need expertise in nonprofit accounting, financial reporting, and a bachelor's degree in accounting or finance, often accompanied by a CPA or similar certification. Familiarity with accounting software like QuickBooks, fund accounting systems, and nonprofit grant management tools is typical. Strong organizational skills, attention to detail, and effective communication are crucial soft skills for collaborating remotely and managing multiple funding sources. These competencies ensure accurate financial oversight, regulatory compliance, and mission-driven stewardship of nonprofit resources.
What are the most commonly searched types of Nonprofit Controller jobs in Rochester, NY? The most popular types of Nonprofit Controller jobs in Rochester, NY are:
What are popular job titles related to Remote Nonprofit Controller jobs in Rochester, NY? For Remote Nonprofit Controller jobs in Rochester, NY, the most frequently searched job titles are:
What job categories do people searching Remote Nonprofit Controller jobs in Rochester, NY look for? The top searched job categories for Remote Nonprofit Controller jobs in Rochester, NY are:
What cities near Rochester, NY are hiring for Remote Nonprofit Controller jobs? Cities near Rochester, NY with the most Remote Nonprofit Controller job openings:
Remote Nonprofit Controller jobs near you
Infographic showing various Remote Nonprofit Controller job openings in Rochester, NY as of June 2026, with employment types broken down into 85% Full Time, 12% Part Time, and 3% Contract. Highlights an 100% Remote job distribution, with an average salary of $117,904 per year, or $56.7 per hour.

Assistant Controller - (Senior Accounting Consultant)

Insero Advisors, LLC

Rochester, NY • Remote

$70K - $93K/yr

Full-time, Part-time

Retirement, PTO

Posted 18 days ago

Job description

This is a remote position.

Assistant Controller (CAS Senior Accountant/Supervisor)

Fully Remote (ET Zone) | Full-Time or Part-Time


Join Insero’s Client Accounting Services (CAS) team and enjoy meaningful client work, schedule flexibility, and a variety of projects supporting a variety of organizations. If you want a role where every day looks different—and your expertise has real impact—this is it.


Client Accounting Services: Our Client Accounting Services Group has been around for over 20 years and is made up of dedicated personnel whose only assignments are supporting our client base. We are full-time CPAs, CMAs, Accountants and Business Managers. We understand the issues that Controllers and CFOs face every day – and our technology, experience and flexibility add real value. Accounting Consulting for us is not something that fills our downtime; it is our focus all year long. Our services range from bookkeeping to budgeting and forecasting. Our Client Accounting Services Team ensures our clients have the information and advice they require to run their business/organization.


What You’ll Do

  • Lead/support full‑accrual month‑end close, journal entries, reconciliations, A/P, A/R, payroll, and financial reporting.
  • Analyze and clean up general ledger activity to ensure accuracy.
  • Assist with cash flow, disclosures, budgeting, and annual planning.
  • Communicate directly with clients and coordinate with auditors and external partners.
  • Improve processes, strengthen internal controls, and help upgrade or implement accounting systems.
  • Supervise staff as needed.




Requirements

What You Bring

  • Associate’s in Accounting required; Bachelor’s preferred.
  • 4+ years accounting experience with nonprofit exposure (industry or public).
  • Strong month‑end close and reconciliation skills.
  • Experience with QuickBooks Online, Intacct, and Bill.com strongly preferred.
  • Excellent communication, client service mindset, and the ability to manage multiple engagements.
  • CPA/CMA a plus.

Compensation

$72,000–$95,000 base salary, depending on experience. Additional discretionary bonus opportunities available.



Benefits

Why Insero

  • 4–5 weeks PTO + 16 paid holidays
  • Remote/hybrid flexibility
  • 401(k) with firm contributions
  • Tuition reimbursement program
  • Robust benefits offerings
  • Spot bonuses, CPA bonus, training & technology investment
  • Ranked the #4 Best Company to Work For in New York in the Medium Companies category (State, NYS-SHRM and Best Companies Group) 2026. 2025, 2023 and 2022 ranked #1 and in 2024, ranked #3.
  • Best Accounting Firms to Work For (National, Accounting Today and Best Companies Group) 2012-2025.
  • #1 Best Accounting Firm, Reader Rankings (Local, Rochester Business Journal) 2023-2026, consistently ranked since joining in 2018.


At Insero, we believe in being passionate about people, delivering excellence, growing to new heights, and going further together. If these values resonate with you, we encourage you to apply!

Insero is an Equal Opportunity Employer.