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Nonprofit Controller Jobs (NOW HIRING)

CFS

Nonprofit Controller

San Antonio, TX · On-site +1

$110K/yr

Nonprofit Controller Compensation: Up to $110,000 base salary Location: San Antonio, TX Step into a high‑impact leadership role with a respected, mission‑driven nonprofit celebrating its ...

All In One Accounting

Controller - Nonprofit

Houston, TX · On-site

$85K - $125K/yr

As a Nonprofit Controller, you'll own client relationships while leading internal delivery teams to ensure exceptional service delivery. You'll work alongside Accountants and CFOs in a dynamic, multi ...

LHH US

Non-Profit Controller

Oklahoma City, OK

$90K - $95K/yr

The Controller oversees all accounting operations and financial reporting for a mission-driven nonprofit organization. This role ensures accuracy, compliance, and strong financial controls while ...

LHH US

Non-Profit Controller

Oklahoma City, OK

$90K - $95K/yr

The Controller oversees all accounting operations and financial reporting for a mission-driven nonprofit organization. This role ensures accuracy, compliance, and strong financial controls while ...

All In One Accounting

Controller - Nonprofit

Houston, TX · On-site

$85K - $125K/yr

As a Nonprofit Controller, you'll own client relationships while leading internal delivery teams to ensure exceptional service delivery. You'll work alongside Accountants and CFOs in a dynamic, multi ...

Prolanthropy

Non-Profit Controller

Florence, KY · On-site

$60K - $65K/yr

NON-PROFIT CONTROLLER CORPORATE OVERVIEW: Prolanthropy is the largest and most successful provider of philanthropy management services in professional sports, specializing in forming and managing ...

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Nonprofit Controller information

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$55K

$119.5K

$175.5K

How much do nonprofit controller jobs pay per year?

As of Jun 22, 2026, the average yearly pay for nonprofit controller in the United States is $119,497.00, according to ZipRecruiter salary data. Most workers in this role earn between $97,000.00 and $138,500.00 per year, depending on experience, location, and employer.

How does a Nonprofit Controller typically collaborate with program managers and development teams?

As a Nonprofit Controller, you will regularly work with program managers and development teams to ensure proper allocation of funds and compliance with grant requirements. This collaboration often involves budget planning, financial reporting, and providing guidance on allowable expenses. Open communication is key, as you'll help translate financial data into actionable insights that support program objectives and fundraising efforts. Building strong relationships with these teams is essential for accurate financial tracking and organizational success.

What are the key skills and qualifications needed to thrive as a Nonprofit Controller, and why are they important?

To thrive as a Nonprofit Controller, you need strong expertise in nonprofit accounting, financial analysis, and compliance, usually supported by a bachelor’s degree in accounting or finance and often a CPA certification. Familiarity with fund accounting software such as QuickBooks Nonprofit, Sage Intacct, or Blackbaud Financial Edge is typically required. Exceptional attention to detail, integrity, and strong communication skills help build trust and facilitate collaboration across departments. These skills are crucial for maintaining financial transparency, ensuring regulatory compliance, and supporting the organization's mission-driven goals.

What is a Nonprofit Controller?

A Nonprofit Controller is a senior financial professional responsible for managing the accounting, financial reporting, budgeting, and compliance functions within a nonprofit organization. They ensure that all financial practices adhere to regulatory standards and support the organization’s mission. Nonprofit Controllers oversee the preparation of financial statements, manage audits, and often supervise accounting staff. Their work helps maintain transparency and accountability in the organization’s use of funds.

What Does a Nonprofit Controller Do?

A nonprofit controller manages accounting operations for a charitable organization. In this career, you oversee the collection of data and information for use in financial statement reports. You supervise budget planning. You coordinate both internal and external audit processes and make operational adjustments based on the results of those audits. As a controller, you have hiring and training responsibilities in addition to your operational management duties. You select new employees and make sure they receive proper training, and you ensure that your employees account for all necessary information that you use for reporting and financial summaries for donors and regulatory authorities.

What is the difference between Nonprofit Controller vs Nonprofit Accountant?

AspectNonprofit ControllerNonprofit Accountant
CredentialsCPA or equivalent, financial management experienceAccounting degree or certification, entry to mid-level experience
Work EnvironmentOversees financial operations, manages staff, strategic planningHandles day-to-day bookkeeping, reconciliations, and reporting
Employer & Industry UsageNonprofit organizations, foundations, charitiesNonprofits, small organizations, community groups
Search & Comparison IntentHigher-level financial management rolesEntry to mid-level accounting roles

The Nonprofit Controller typically holds a CPA and manages the organization's financial strategy, staff, and compliance. In contrast, a Nonprofit Accountant focuses on routine bookkeeping and financial reporting. While both roles require accounting skills, the Controller's position is more strategic and supervisory, making it suitable for those with more experience and credentials.

More about Nonprofit Controller jobs
What cities are hiring for Nonprofit Controller jobs? Cities with the most Nonprofit Controller job openings:
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Nonprofit Controller jobs near you
Infographic showing various Nonprofit Controller job openings in the United States as of June 2026, with employment types broken down into 1% Internship, 6% As Needed, 89% Full Time, 2% Part Time, 1% Temporary, and 1% Contract. Highlights an 83% Physical, 12% Hybrid, and 5% Remote job distribution, with an average salary of $119,497 per year, or $57.5 per hour.
NON- PROFIT CONTROLLER

NON- PROFIT CONTROLLER

NATIONAL NETWORK OF PUBLIC HEALTH INSTITUTES

New Orleans, LA • On-site

Other

Posted 16 days ago

Job description

Description

The National Network of Public Health Institutes (NNPHI) is an active network comprised of over forty-member public health institutes located throughout all ten Health and Human Services regions. NNPHI also serves as the National Coordinating Center for Public Health Training (NCCPHT) and hosts an affiliate network of Regional Public Health Training Centers (Regional PHTCs) serving all fifty states and US territories. Public health institutes (PHIs) are nonprofit organizations that improve the public's health by fostering innovation, leveraging resources, and building partnerships across sectors, including government agencies, communities, the health care delivery system, media, and academia. NNPHI and its member institutes work together to implement public health policy and program initiatives throughout the nation. NNPHI offices are located in New Orleans and Washington, DC.

The NNPHI mission is to support national public health system initiatives and strengthen public health institutes to promote multi-sector activities resulting in measurable improvements of public health structures, systems, and outcomes. NNPHI's vision is innovation-fostering public health institutes across the nation collaborating to improve population health.

NNPHI collaborates with its member public health institutes and a wide range of national, state, tribal, and local partners to support public health initiatives. These collaborative efforts promote health equity, support public health and health systems collaboration, build the capacity of the public health system, encourage health in all policies, and promote evidence-based public health practice. Additional information about NNPHI's program areas and collaborative efforts with public health institutes is available at www.nnphi.org.


Position Summary:

We are seeking a highly skilled and experienced Nonprofit Controller to join our team. The ideal candidate will have a strong background in financial management, budgeting, and grant accounting and experience working within the nonprofit sector. As the Nonprofit Controller, you will be responsible for overseeing the financial operations of the organization, managing a substantial operating budget, and ensuring compliance with all relevant private and governmental regulatory requirements.


Primary Responsibilities:

Manage and oversee the organization's operational budget, ranging from $25,000,000 to$75,000,000, ensuring fiscal responsibility and strategic allocation of resources.

Provide leadership and direction to the Finance team, including hiring, training, and performance management.

Prepare and analyze financial reports, forecasts, and projections to inform decision-making and ensure the financial health of the organization.

Coordinate the annual audit process, including preparing for and facilitating the federal single audit and IRS 990 filings.

Oversee grant accounting activities, including budgeting, reporting, and compliance with grant requirements.

Develop and implement financial policies, procedures, and internal controls to safeguard assets and ensure compliance with regulatory standards and best practices.

Collaborate with NNPHI's directors and their portfolio to support organizational goals and initiatives, providing financial insights and recommendations as needed.

Stay updated on current trends and best practices in nonprofit finance and accounting.

Requirements

Bachelor's degree in accounting, finance, or a related field; CPA Required.

Minimum of 5 years of experience in financial management, with specific experience in nonprofit-accounting and grant management.

Strong knowledge of GAAP and nonprofit accounting principles.

Proven experience managing large operational budgets and overseeing financial operations in a complex organization.

Experience preparing IRS Form 990 and coordinating federal single audits.

Excellent leadership and interpersonal skills, with the ability to work effectively with diverse stakeholders.

Excellent communication skills, both verbal and written, with the ability to work well with others in a team environment.

Detail-oriented with strong analytical and problem-solving abilities.

Proficiency in accounting software systems and Microsoft Excel. Experience working with Sage Intacct is a plus.

Apply