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Nonprofit Controller Jobs (NOW HIRING)

CFS

Controller (Non-Profit)

Indianapolis, IN · Hybrid

$95K - $120K/yr

Strong knowledge of nonprofit accounting, including fund and grant accounting * Prior experience in a controller, assistant controller, or accounting manager role * Experience managing or mentoring ...

CFS

Controller (Non-Profit)

Indianapolis, IN · Hybrid

$95K - $120K/yr

Strong knowledge of nonprofit accounting, including fund and grant accounting * Prior experience in a controller, assistant controller, or accounting manager role * Experience managing or mentoring ...

CFS

Controller (Non-Profit)

Indianapolis, IN · Hybrid

$95K - $120K/yr

Strong knowledge of nonprofit accounting, including fund and grant accounting * Prior experience in a controller, assistant controller, or accounting manager role * Experience managing or mentoring ...

CFS

Controller (Non-Profit)

Indianapolis, IN · Hybrid

$95K - $120K/yr

Strong knowledge of nonprofit accounting, including fund and grant accounting * Prior experience in a controller, assistant controller, or accounting manager role * Experience managing or mentoring ...

CFS

Controller (Non-Profit)

Indianapolis, IN · Hybrid

$95K - $120K/yr

Strong knowledge of nonprofit accounting, including fund and grant accounting * Prior experience in a controller, assistant controller, or accounting manager role * Experience managing or mentoring ...

CFS

Controller (Non-Profit)

Indianapolis, IN · Hybrid

$95K - $120K/yr

Strong knowledge of nonprofit accounting, including fund and grant accounting * Prior experience in a controller, assistant controller, or accounting manager role * Experience managing or mentoring ...

CFS

Controller (Non-Profit)

Indianapolis, IN · Hybrid

$95K - $120K/yr

Strong knowledge of nonprofit accounting, including fund and grant accounting * Prior experience in a controller, assistant controller, or accounting manager role * Experience managing or mentoring ...

CFS

Controller (Non-Profit)

Indianapolis, IN · Hybrid

$95K - $120K/yr

Strong knowledge of nonprofit accounting, including fund and grant accounting * Prior experience in a controller, assistant controller, or accounting manager role * Experience managing or mentoring ...

CFS

Controller- Nonprofit

Boston, MA · Hybrid

... Controller Qualifications: • Bachelor's degree in Accounting or related field; CPA or MBA preferred • Strong knowledge of nonprofit accounting, financial reporting, and compliance requirements ...

CFS

Controller- Nonprofit

Boston, MA · Hybrid

... Controller Qualifications: • Bachelor's degree in Accounting or related field; CPA or MBA preferred • Strong knowledge of nonprofit accounting, financial reporting, and compliance requirements ...

GHJ

Controller - Nonprofit Organization

Los Angeles, CA

$150K - $177K/yr

The Controller is responsible for overseeing the financial operations of the nonprofit organization, including accounting, financial reporting, budgeting, compliance, internal controls, and audit ...

GHJ

Controller - Nonprofit Organization

Los Angeles, CA · On-site

$150K - $177K/yr

The Controller is responsible for overseeing the financial operations of the nonprofit organization, including accounting, financial reporting, budgeting, compliance, internal controls, and audit ...

PACE

Controller for Nonprofit

Los Angeles, CA

$170K - $200K/yr

The Controller will lead the finance team, work closely with department heads, and play a critical ... Maintain accounting records in compliance with GAAP and nonprofit best practices. Budgeting ...

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$55K

$119.5K

$175.5K

How much do nonprofit controller jobs pay per year?

As of May 30, 2026, the average yearly pay for nonprofit controller in the United States is $119,497.00, according to ZipRecruiter salary data. Most workers in this role earn between $97,000.00 and $138,500.00 per year, depending on experience, location, and employer.

What Does a Nonprofit Controller Do?

A nonprofit controller manages accounting operations for a charitable organization. In this career, you oversee the collection of data and information for use in financial statement reports. You supervise budget planning. You coordinate both internal and external audit processes and make operational adjustments based on the results of those audits. As a controller, you have hiring and training responsibilities in addition to your operational management duties. You select new employees and make sure they receive proper training, and you ensure that your employees account for all necessary information that you use for reporting and financial summaries for donors and regulatory authorities.

What are the key skills and qualifications needed to thrive as a Nonprofit Controller, and why are they important?

To thrive as a Nonprofit Controller, you need strong expertise in nonprofit accounting, financial analysis, and compliance, usually supported by a bachelor’s degree in accounting or finance and often a CPA certification. Familiarity with fund accounting software such as QuickBooks Nonprofit, Sage Intacct, or Blackbaud Financial Edge is typically required. Exceptional attention to detail, integrity, and strong communication skills help build trust and facilitate collaboration across departments. These skills are crucial for maintaining financial transparency, ensuring regulatory compliance, and supporting the organization's mission-driven goals.

How does a Nonprofit Controller typically collaborate with program managers and development teams?

As a Nonprofit Controller, you will regularly work with program managers and development teams to ensure proper allocation of funds and compliance with grant requirements. This collaboration often involves budget planning, financial reporting, and providing guidance on allowable expenses. Open communication is key, as you'll help translate financial data into actionable insights that support program objectives and fundraising efforts. Building strong relationships with these teams is essential for accurate financial tracking and organizational success.

What is a Nonprofit Controller?

A Nonprofit Controller is a senior financial professional responsible for managing the accounting, financial reporting, budgeting, and compliance functions within a nonprofit organization. They ensure that all financial practices adhere to regulatory standards and support the organization’s mission. Nonprofit Controllers oversee the preparation of financial statements, manage audits, and often supervise accounting staff. Their work helps maintain transparency and accountability in the organization’s use of funds.

What is the difference between Nonprofit Controller vs Nonprofit Accountant?

AspectNonprofit ControllerNonprofit Accountant
CredentialsCPA or equivalent, financial management experienceAccounting degree or certification, entry to mid-level experience
Work EnvironmentOversees financial operations, manages staff, strategic planningHandles day-to-day bookkeeping, reconciliations, and reporting
Employer & Industry UsageNonprofit organizations, foundations, charitiesNonprofits, small organizations, community groups
Search & Comparison IntentHigher-level financial management rolesEntry to mid-level accounting roles

The Nonprofit Controller typically holds a CPA and manages the organization's financial strategy, staff, and compliance. In contrast, a Nonprofit Accountant focuses on routine bookkeeping and financial reporting. While both roles require accounting skills, the Controller's position is more strategic and supervisory, making it suitable for those with more experience and credentials.

More about Nonprofit Controller jobs
What cities are hiring for Nonprofit Controller jobs? Cities with the most Nonprofit Controller job openings:
What are the most commonly searched types of Nonprofit Controller jobs? The most popular types of Nonprofit Controller jobs are:
What states have the most Nonprofit Controller jobs? States with the most job openings for Nonprofit Controller jobs include:
What job categories do people searching Nonprofit Controller jobs look for? The top searched job categories for Nonprofit Controller jobs are:
Nonprofit Controller jobs near you
Infographic showing various Nonprofit Controller job openings in the United States as of May 2026, with employment types broken down into 1% Internship, 57% Full Time, 40% Part Time, and 2% Contract. Highlights an 96% Physical, 2% Hybrid, and 2% Remote job distribution, with an average salary of $119,497 per year, or $57.5 per hour.

Controller (Non-Profit)

CFS

Indianapolis, IN • Hybrid

$95K - $120K/yr

Full-time

Posted 15 days ago

Job description

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Controller (Non‑Profit)

Indianapolis, IN
Hybrid schedule (up to 2 days work from home)
$95,000 – $120,000 base salary (flexible based on experience and nonprofit complexity)

A mission‑driven organization in the Indianapolis area is seeking a Controller to lead accounting operations and ensure financial integrity in support of organizational goals. This role is ideal for an experienced accounting professional with nonprofit experience who enjoys blending hands‑on accounting with leadership, oversight, and strategic collaboration.

The Controller will play a key role in financial reporting, compliance, and process improvement while partnering closely with leadership to support transparency and stewardship of funds.

Key Responsibilities
  • Oversee all accounting operations, including general ledger, month‑end close, and financial reporting
  • Prepare and review monthly, quarterly, and annual financial statements
  • Ensure compliance with nonprofit accounting standards, including GAAP and fund accounting
  • Manage budgeting, forecasting, and variance analysis in collaboration with leadership
  • Oversee grant tracking, restricted funds, and donor‑related reporting
  • Coordinate annual audits and serve as the primary point of contact for external auditors
  • Maintain and strengthen internal controls and accounting policies
  • Lead and develop accounting staff; provide guidance, training, and oversight
  • Support process improvements and system efficiencies within the accounting function
Qualifications
  • Bachelor’s degree in Accounting, Finance, or related field (required)
  • 5–10+ years of progressive accounting experience, ideally within a nonprofit organization
  • Strong knowledge of nonprofit accounting, including fund and grant accounting
  • Prior experience in a controller, assistant controller, or accounting manager role
  • Experience managing or mentoring accounting staff
  • Strong understanding of internal controls and audit processes
  • Proficiency with accounting systems and Excel
  • CPA preferred but not required
Compensation & Opportunity
  • Base salary range of $95K–$120K, depending on experience
  • Hybrid work environment with remote flexibility
  • High‑impact leadership role supporting a mission‑driven organization
  • Opportunity to influence financial strategy and operational improvements
  • Stable organization with long‑term growth and visibility

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