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Manager Nonprofit Controller Jobs (NOW HIRING)

All In One Accounting

Controller - Nonprofit

Houston, TX · On-site

$85K - $125K/yr

As a Nonprofit Controller, you'll own client relationships while leading internal delivery teams to ... You thrive in a fast-paced environment managing multiple client relationships and can shift ...

All In One Accounting

Controller - Nonprofit

Houston, TX · On-site

$85K - $125K/yr

As a Nonprofit Controller, you'll own client relationships while leading internal delivery teams to ... You thrive in a fast-paced environment managing multiple client relationships and can shift ...

LHH US

Non-Profit Controller

Oklahoma City, OK · On-site

$90K - $95K/yr

The Controller oversees all accounting operations and financial reporting for a mission-driven ... Manage annual audit and ensure regulatory, nonprofit, and grant compliance * Maintain internal ...

LHH US

Non-Profit Controller

Oklahoma City, OK

$90K - $95K/yr

The Controller oversees all accounting operations and financial reporting for a mission-driven ... Manage annual audit and ensure regulatory, nonprofit, and grant compliance * Maintain internal ...

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How much do manager nonprofit controller jobs pay per year?

As of Jul 14, 2026, the average yearly pay for manager nonprofit controller in the United States is $55,952.00, according to ZipRecruiter salary data. Most workers in this role earn between $38,000.00 and $60,000.00 per year, depending on experience, location, and employer.

How does a Manager Nonprofit Controller typically collaborate with program and development teams within an organization?

A Manager Nonprofit Controller works closely with program and development teams to ensure that financial planning, budgeting, and reporting align with the organization's mission and fundraising goals. They provide financial insights to help evaluate program effectiveness and support grant compliance by tracking restricted funds and reporting requirements. Regular meetings and open communication are common, fostering a collaborative environment where financial and programmatic objectives are synchronized for optimal impact.

What are the key skills and qualifications needed to thrive as a Manager Nonprofit Controller, and why are they important?

To thrive as a Manager Nonprofit Controller, you need expertise in nonprofit accounting, financial reporting, and budgeting, generally supported by a bachelor’s degree in accounting or finance and relevant experience. Familiarity with accounting software such as QuickBooks Nonprofit, Blackbaud, or Sage Intacct, and often a CPA certification, is highly valued. Strong leadership, attention to detail, and effective communication skills set top candidates apart in this role. These skills ensure accurate financial oversight, compliance with nonprofit regulations, and sound decision-making to support the organization’s mission.

What is a Manager Nonprofit Controller?

A Manager Nonprofit Controller is a financial leader responsible for overseeing the accounting and financial reporting functions of a nonprofit organization. They ensure compliance with accounting standards and regulatory requirements specific to nonprofits, manage budgets, prepare financial statements, and may oversee audits. Additionally, they work closely with executive leadership to inform financial strategy, monitor grant funding, and support the organization's mission through sound fiscal management.

What is the difference between Manager Nonprofit Controller vs Bookkeeper?

AspectManager Nonprofit ControllerBookkeeper
CredentialsAccounting degree, CPA preferredHigh school diploma or equivalent
ResponsibilitiesFinancial oversight, budgeting, financial reportingRecording transactions, maintaining ledgers
Work EnvironmentNonprofit organizations, finance departmentsAccounting firms, small nonprofits
Industry UsageCommon in nonprofit sectorWidespread across industries

The Manager Nonprofit Controller oversees financial management, budgeting, and reporting within nonprofit organizations, requiring advanced accounting skills and certifications. In contrast, a Bookkeeper handles day-to-day transaction recording with less emphasis on strategic financial planning. The Controller role is more senior and analytical, while Bookkeeping is more operational and clerical.

More about Manager Nonprofit Controller jobs
What cities are hiring for Manager Nonprofit Controller jobs? Cities with the most Manager Nonprofit Controller job openings:
What are the most commonly searched types of Nonprofit Controller jobs? The most popular types of Nonprofit Controller jobs are:
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Manager Nonprofit Controller jobs near you
Infographic showing various Manager Nonprofit Controller job openings in the United States as of July 2026, with employment types broken down into 93% Full Time, 4% Part Time, 1% Temporary, 1% Contract, and 1% Summer. Highlights an 89% Physical, 4% Hybrid, and 7% Remote job distribution, with an average salary of $55,952 per year, or $26.9 per hour.
NON- PROFIT CONTROLLER

NON- PROFIT CONTROLLER

NATIONAL NETWORK OF PUBLIC HEALTH INSTITUTES

New Orleans, LA

Other

Re-posted 8 days ago

Job description

Description

The National Network of Public Health Institutes (NNPHI) is an active network comprised of over forty-member public health institutes located throughout all ten Health and Human Services regions. NNPHI also serves as the National Coordinating Center for Public Health Training (NCCPHT) and hosts an affiliate network of Regional Public Health Training Centers (Regional PHTCs) serving all fifty states and US territories. Public health institutes (PHIs) are nonprofit organizations that improve the public's health by fostering innovation, leveraging resources, and building partnerships across sectors, including government agencies, communities, the health care delivery system, media, and academia. NNPHI and its member institutes work together to implement public health policy and program initiatives throughout the nation. NNPHI offices are located in New Orleans and Washington, DC.

The NNPHI mission is to support national public health system initiatives and strengthen public health institutes to promote multi-sector activities resulting in measurable improvements of public health structures, systems, and outcomes. NNPHI's vision is innovation-fostering public health institutes across the nation collaborating to improve population health.

NNPHI collaborates with its member public health institutes and a wide range of national, state, tribal, and local partners to support public health initiatives. These collaborative efforts promote health equity, support public health and health systems collaboration, build the capacity of the public health system, encourage health in all policies, and promote evidence-based public health practice. Additional information about NNPHI's program areas and collaborative efforts with public health institutes is available at www.nnphi.org.


Position Summary:

We are seeking a highly skilled and experienced Nonprofit Controller to join our team. The ideal candidate will have a strong background in financial management, budgeting, and grant accounting and experience working within the nonprofit sector. As the Nonprofit Controller, you will be responsible for overseeing the financial operations of the organization, managing a substantial operating budget, and ensuring compliance with all relevant private and governmental regulatory requirements.


Primary Responsibilities:

Manage and oversee the organization's operational budget, ranging from $25,000,000 to$75,000,000, ensuring fiscal responsibility and strategic allocation of resources.

Provide leadership and direction to the Finance team, including hiring, training, and performance management.

Prepare and analyze financial reports, forecasts, and projections to inform decision-making and ensure the financial health of the organization.

Coordinate the annual audit process, including preparing for and facilitating the federal single audit and IRS 990 filings.

Oversee grant accounting activities, including budgeting, reporting, and compliance with grant requirements.

Develop and implement financial policies, procedures, and internal controls to safeguard assets and ensure compliance with regulatory standards and best practices.

Collaborate with NNPHI's directors and their portfolio to support organizational goals and initiatives, providing financial insights and recommendations as needed.

Stay updated on current trends and best practices in nonprofit finance and accounting.

Requirements

Bachelor's degree in accounting, finance, or a related field; CPA Required.

Minimum of 5 years of experience in financial management, with specific experience in nonprofit-accounting and grant management.

Strong knowledge of GAAP and nonprofit accounting principles.

Proven experience managing large operational budgets and overseeing financial operations in a complex organization.

Experience preparing IRS Form 990 and coordinating federal single audits.

Excellent leadership and interpersonal skills, with the ability to work effectively with diverse stakeholders.

Excellent communication skills, both verbal and written, with the ability to work well with others in a team environment.

Detail-oriented with strong analytical and problem-solving abilities.

Proficiency in accounting software systems and Microsoft Excel. Experience working with Sage Intacct is a plus.

Apply