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Manager Nonprofit Controller Jobs (NOW HIRING)

Controller

El Cerrito, CA · On-site

$145K - $160K/yr

Controller Location: San Francisco Bay Area (Hybrid. Remote work with required attendance at ... Experience managing nonprofit audits, and Form 990 filings. * Proven ability to lead process ...

Controller

Novato, CA · On-site

$145K - $170K/yr

Controller Location: San Francisco Bay Area (Hybrid. Remote work with required attendance at ... Experience managing nonprofit audits, and Form 990 filings. * Proven ability to lead process ...

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Manager Nonprofit Controller information

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$19K

$56K

$98K

How much do manager nonprofit controller jobs pay per year?

As of Jul 14, 2026, the average yearly pay for manager nonprofit controller in the United States is $55,952.00, according to ZipRecruiter salary data. Most workers in this role earn between $38,000.00 and $60,000.00 per year, depending on experience, location, and employer.

How does a Manager Nonprofit Controller typically collaborate with program and development teams within an organization?

A Manager Nonprofit Controller works closely with program and development teams to ensure that financial planning, budgeting, and reporting align with the organization's mission and fundraising goals. They provide financial insights to help evaluate program effectiveness and support grant compliance by tracking restricted funds and reporting requirements. Regular meetings and open communication are common, fostering a collaborative environment where financial and programmatic objectives are synchronized for optimal impact.

What are the key skills and qualifications needed to thrive as a Manager Nonprofit Controller, and why are they important?

To thrive as a Manager Nonprofit Controller, you need expertise in nonprofit accounting, financial reporting, and budgeting, generally supported by a bachelor’s degree in accounting or finance and relevant experience. Familiarity with accounting software such as QuickBooks Nonprofit, Blackbaud, or Sage Intacct, and often a CPA certification, is highly valued. Strong leadership, attention to detail, and effective communication skills set top candidates apart in this role. These skills ensure accurate financial oversight, compliance with nonprofit regulations, and sound decision-making to support the organization’s mission.

What is a Manager Nonprofit Controller?

A Manager Nonprofit Controller is a financial leader responsible for overseeing the accounting and financial reporting functions of a nonprofit organization. They ensure compliance with accounting standards and regulatory requirements specific to nonprofits, manage budgets, prepare financial statements, and may oversee audits. Additionally, they work closely with executive leadership to inform financial strategy, monitor grant funding, and support the organization's mission through sound fiscal management.

What is the difference between Manager Nonprofit Controller vs Bookkeeper?

AspectManager Nonprofit ControllerBookkeeper
CredentialsAccounting degree, CPA preferredHigh school diploma or equivalent
ResponsibilitiesFinancial oversight, budgeting, financial reportingRecording transactions, maintaining ledgers
Work EnvironmentNonprofit organizations, finance departmentsAccounting firms, small nonprofits
Industry UsageCommon in nonprofit sectorWidespread across industries

The Manager Nonprofit Controller oversees financial management, budgeting, and reporting within nonprofit organizations, requiring advanced accounting skills and certifications. In contrast, a Bookkeeper handles day-to-day transaction recording with less emphasis on strategic financial planning. The Controller role is more senior and analytical, while Bookkeeping is more operational and clerical.

More about Manager Nonprofit Controller jobs
What cities are hiring for Manager Nonprofit Controller jobs? Cities with the most Manager Nonprofit Controller job openings:
What are the most commonly searched types of Nonprofit Controller jobs? The most popular types of Nonprofit Controller jobs are:
What states have the most Manager Nonprofit Controller jobs? States with the most job openings for Manager Nonprofit Controller jobs include:
Infographic showing various Manager Nonprofit Controller job openings in the United States as of July 2026, with employment types broken down into 93% Full Time, 4% Part Time, 1% Temporary, 1% Contract, and 1% Summer. Highlights an 89% Physical, 4% Hybrid, and 7% Remote job distribution, with an average salary of $55,952 per year, or $26.9 per hour.
CAAS- Controller - Nonprofit

Full-time

Medical, Dental, Vision, Retirement

Re-posted 8 days ago


CliftonLarsonAllen rating

7.4

Company rating: 7.4 out of 10

Based on 26 frontline employees who took The Breakroom Quiz

15th of 17 rated bookkeepers and accountants


Job description

CLA is a top 10 national professional services firm where our purpose is to create opportunities every day, for our clients, our people, and our communities through industry-focused wealth advisory, digital, audit, tax, consulting, and outsourcing services. Even with more than 9,000 people, 130 U.S. locations, and a global reach, we promise to know you and help you.

CLA is dedicated to building a culture that invites different beliefs and perspectives to the table, so we can truly know and help our clients, communities, and each other.

About the role:

CAAS service helps our clients transform their Business with a collaborative approach that allows them to seamlessly mitigate risk, overcome challenges, meet deadlines, and identify personnel to help them with their workforce needs.

CLA is looking to hire a Controller for our Nonprofit Client Accounting and Advisory Services (CAAS) practice in Connecticut. Opportunities are available in our West Hartford and Shelton locations.

As a Controller, you will:

  • Act as the Controller for the designated clients you service.
  • Take on the role of consultant and advisor to your clients on best practices for accounting and finance-related engagements.
  • Provide project management expertise by managing multiple clients, work, and deadlines.
  • Prepare and analyze client financial statements and make recommendations.
  • Foster and build opportunities and attend industry-leading events and trainings.
  • Maintain knowledge of the client's organizational policies and procedures, federal and state policies and directives, and current accounting standards.
  • Advise management on short-term and long term-financial objectives, policies, and actions.

What you will need:

  • Six years of relevant accounting and/or financial experience is required.
  • Bachelor's degree is required. Combination of related experience, education, and training may be accepted in lieu of degree.
  • Public accounting experience preferred.
  • Experience in Nonprofit is highly preferred.
  • CPA certification is preferred but not required.
  • Prior project management and client management experience preferred but not required.

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Wellness at CLA

To support our CLA family members, we focus on their physical, financial, social, and emotional well-being and offer comprehensive benefit options that include health, dental, vision, 401k and much more.


To view a complete list of benefits, click here.



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About CliftonLarsonAllen

Sourced by ZipRecruiter

CliftonLarsonAllen (CLA) is a leading professional services company based in Minneapolis, MN, US. CLA operates in the accounting industry and offers a broad range of products and services such as wealth advisory, outsourcing, audit, tax, and consulting services. The company was founded in 1953 with a merger between two firms, Clifton Gunderson and LarsonAllen, in 2012. Working in accordance with their mission to create opportunities for clients, people, and communities, they have established a presence across the US, serving privately held businesses, non-profits, and governmental entities. Recognized for their contributions, CLA has received accolades such as the Innovative Firm of the Year award.

Industry

Accounting services

Company size

5,001 - 10,000 Employees

Headquarters location

Minneapolis, MN, US

Year founded

2012