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Contract Nonprofit Controller Jobs (NOW HIRING)

Now CFO

Controller

San Diego, CA · On-site

$140K - $160K/yr

Oversee accounting for government contracts, grants, and restricted funding, including nonprofit ... Controller, Assistant Controller, Accounting Director, or comparable leadership experience * Hands ...

Now CFO

Controller

San Diego, CA · On-site

Oversee accounting for government contracts, grants, and restricted funding, including nonprofit ... Controller, Assistant Controller, Accounting Director, or comparable leadership experience * Hands ...

Mental Health Partnerships

Controller

Philadelphia, PA · On-site

$120K - $130K/yr

... nonprofit organization. Reporting to the Chief Financial Officer, the Controller will lead day-to-day accounting operations, financial reporting, grant and contract accounting, audit readiness ...

Parent Network

Controller

Buffalo, NY · On-site

Company Description Non - profit Controller Parent Network of WNY, a nonprofit in Buffalo that ... contracts. • Work closely and transparently with all external partners including organization ...

Santa Fe Recovery Center, Inc.

Controller

Santa Fe, NM · On-site

The Controller, reporting to the Chief Operating Officer, is responsible for the overall leadership ... Experience leading non-profit annual audits * Experience with federal grants/contracts or cost ...

CFS

Controller

El Cerrito, CA · On-site

$140K - $180K/yr

Our financial health is strong as the vast majority of funding comes from long-standing contracts ... S. GAAP, IRS 501(c)(3) regulations, and nonprofit accounting standards. This role leads the ...

Santa Fe Recovery Center, Inc

Controller

Santa Fe, NM · On-site

The Controller, reporting to the Chief Operating Officer, is responsible for the overall leadership ... Experience leading non-profit annual audits * Experience with federal grants/contracts or cost ...

Santa Fe Recovery Center, Inc

Controller

Santa Fe, NM · On-site

The Controller, reporting to the Chief Operating Officer, is responsible for the overall leadership ... Experience leading non-profit annual audits * Experience with federal grants/contracts or cost ...

CFS

Controller

El Cerrito, CA · Hybrid

$140K - $180K/yr

Our financial health is strong as the vast majority of funding comes from long-standing contracts ... S. GAAP, IRS 501(c)(3) regulations, and nonprofit accounting standards. This role leads the ...

Northwest Youth Corps

Controller

Eugene, OR · On-site

$90K/yr

Organizational Background Since 1984, Northwest Youth Corps (NYC), a non-profit organization, has ... Review and reconcile restricted and unrestricted funds, grants, contracts, projects, and cost ...

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Contract Nonprofit Controller information

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$55K

$119.5K

$175.5K

How much do contract nonprofit controller jobs pay per year?

As of Sep 13, 2026, the average yearly pay for contract nonprofit controller in the United States is $119,497.00, according to ZipRecruiter salary data. Most workers in this role earn between $97,000.00 and $138,500.00 per year, depending on experience, location, and employer.

What is the difference between Contract Nonprofit Controller vs Bookkeeper?

AspectContract Nonprofit ControllerBookkeeper
CredentialsCPA or accounting degree often preferredHigh school diploma or equivalent, bookkeeping certification optional
Work EnvironmentPart-time or project-based, overseeing financial strategyDaily transaction recording, data entry
Employer UsageNonprofits needing financial oversight and complianceOrganizations requiring basic financial record-keeping

The Contract Nonprofit Controller focuses on financial management, reporting, and compliance, often with advanced credentials like a CPA. In contrast, a Bookkeeper handles routine transaction recording with minimal strategic involvement. While both roles support nonprofit financial health, the Controller's role is more strategic and oversight-oriented, making it suitable for organizations with complex financial needs.

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What cities are hiring for Contract Nonprofit Controller jobs?

Cities with the most Contract Nonprofit Controller job openings:

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The most popular types of Nonprofit Controller jobs are:

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Contract Nonprofit Controller jobs near you
Infographic showing various Contract Nonprofit Controller job openings in the United States as of September 2026, with employment types broken down into 4% Internship, 3% As Needed, 75% Full Time, 17% Part Time, and 1% Contract. Highlights an 91% Physical, 3% Hybrid, and 6% Remote job distribution, with an average salary of $119,497 per year, or $57.5 per hour.

Interim Non-Profit Controller, Strategic Resources

Manhattan, NY • On-site

BDO USA
Administrative Assistance Services • 10K+ employees
Learn more about BDO USAexternal

$75 - $105/hr

Full-time

Retirement

Re-posted 5 days ago

BDO USA rating

8.2

Company rating: 8.2 out of 10

Based on 29 frontline employees who took The Breakroom Quiz

Job description


Job Summary:
The Interim Controller (Not-for-Profit) provides leadership and oversight of accounting operations for not-for-profit organizations on a contract basis. This role manages the month-end close process, ensures accurate financial reporting in accordance with NFP accounting standards, and maintains compliance with relevant regulations (including IRS, CRA, and funder requirements). The Interim Controller supervises accounting staff, coordinates audits, and implements process improvements to enhance efficiency and accuracy. This position serves as a key resource for financial analysis, budgeting, and internal controls, supporting clients through periods of transition or increased workload. This role will work a sporadic and fluctuating schedule.
Job Duties:
  • Oversees daily accounting operations, including accounts payable, accounts receivable, and general ledger activities, with attention to restricted/unrestricted funds and grant tracking
  • Manages month-end and year-end close processes, ensuring timely and accurate financial statements in accordance with FASB ASC 958 (or applicable NFP standards)
  • Prepares and reviews financial reports, reconciliations, and supporting schedules
  • Ensures compliance with GAAP NFP-specific accounting standards, and applicable regulatory requirements (e.g., IRS Form 990, CRA T3010, state charity registrations)
  • Coordinates and supports external audits and tax filings
  • Develops, implements, and monitors internal controls and accounting policies
  • Assists with budgeting, forecasting, and financial analysis for client management including program and funder reporting
  • Identifies and implements process improvements to enhance operational efficiency
  • Communicates financial information and recommendations to client leadership
  • Other duties as required

Supervisory Responsibilities:
  • N/A

Qualifications, Knowledge, Skills, and Abilities:
Education
  • Bachelor's degree in Accounting, required
  • Master's degree in Accounting or Finance, preferred

Experience
  • Five (5) or more years of progressive accounting experience, required
  • Two (2) or more years in a supervisory or management role, required
  • Experience in not-for-profit accounting, public accounting, or professional services, preferred
  • Experience with interim or contract controller assignments, preferred

License(s)/Certification(s)
  • CPA, preferred
  • Certified Nonprofit Accounting Professional (CNAP), preferred

Software
  • Proficiency in Microsoft Office Suite, required
  • Experience with major accounting software (e.g., QuickBooks, NetSuite, Sage, SAP), preferred

Language
  • N/A

Other Knowledge, Skills, & Abilities
  • Strong analytical and problem-solving skills
  • Excellent written and verbal communication skills
  • Ability to manage multiple priorities and meet deadlines
  • High attention to detail and accuracy
  • Strong leadership and team management abilities
  • Ability to adapt quickly to changing client needs and environments
  • Demonstrates professionalism and integrity in all client interactions

Individual salaries that are offered to a candidate are determined after consideration of numerous factors including but not limited to the candidate's qualifications, experience, skills, and geography.
National Range: $75/HR - $105/HR
Maryland Range: $75/HR - $105/HR
NYC/Long Island/Westchester Range: $75/HR - $105/HR
About Us
At BDO, how we show up matters. We build strong relationships by supporting one another, our clients, and our communities with care, curiosity, and a commitment to helping one another grow and succeed. Here, you'll find meaningful work, leaders invested in your success, and opportunities to build a career around what matters most to you.
Our purpose is to be the people our clients count on to grow with confidence and achieve what matters most. Our values guide how we bring that purpose to life each day. Together, they shape how we work with one another, serve our clients, and create meaningful impact.
BDO provides assurance, tax, and advisory services to clients across the U.S. and around the world. No matter your role, you'll be part of a team helping clients navigate complexity and move forward with clarity.
We are proud to be an ESOP company, offering participants a stake in the firm's success through beneficial ownership and a unique opportunity to enhance their financial well-being. As a qualified retirement plan, the ESOP is a meaningful addition to our comprehensive compensation and Total Rewards benefits* offerings. It also reinforces an ownership mindset that strengthens our connection to one another, our clients, and the future we're building together.
Learn more about our benefits: BDO Total Rewards encompass more than traditional benefits. Click here to find out more!
*Benefits may be subject to eligibility requirements.
Equal Opportunity Employer, including disability/vets
Click here to find out more!

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About BDO

Sourced by ZipRecruiter

At BDO, culture is the first order of business. We succeed when we cultivate a conscious and caring corporate culture that puts people at the center of everything we do. In essence, the business of our business is to help people thrive every day. This mindset powers our growth by supporting the development of our people, the success of our clients, and the betterment of our communities. It means taking an expansive view of what’s possible, and committing ourselves to achieving exceptional outcomes. At BDO, we are cultivating a culture where our professionals thrive in their work of providing middle market leaders with insight-driven perspectives and assurance, tax and advisory services, helping companies take business as usual to better than usual.

Industry

Administrative assistance services and accounting services

Company size

10,000+ Employees

Headquarters location

Chicago, IL, US

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