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Internship Bioinformatics Software Engineer Jobs

BCC-NIH

Software Developer (C++, Python)

Bethesda, MD · On-site +1

Overview Black Canyon Consulting (BCC) is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and ...

BCC-NIH

Software Developer (C++, Python)

Bethesda, MD · On-site

Overview Black Canyon Consulting (BCC) is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and ...

Ariadne

NCBI Software Developer (C++, Python)

Bethesda, MD · On-site +1

$52.25 - $70.50/hr

Overview Ariadne is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and onsite at the NIH in ...

Baylor Genetics

Sr HPC Engineer

Houston, TX · On-site

$96K - $132K/yr

MS with extensive industry experience may be considered. • 8+ years' experience in bioinformatics software engineering, computational genomics, or related field. • 4+ years' experience leading or ...

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Internship Bioinformatics Software Engineer information

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How much do internship bioinformatics software engineer jobs pay per hour?

As of Jun 7, 2026, the average hourly pay for internship bioinformatics software engineer in the United States is $25.42, according to ZipRecruiter salary data. Most workers in this role earn between $20.67 and $28.85 per hour, depending on experience, location, and employer.

What is the difference between Internship Bioinformatics Software Engineer vs Bioinformatics Data Analyst?

AspectInternship Bioinformatics Software Engineer
Required CredentialsEnrolled in or recent graduate of Computer Science, Bioinformatics, or related fields
Work EnvironmentResearch labs, biotech companies, or academic institutions
Employer & Industry UsageUsed in biotech, pharmaceutical, and research organizations for software development
Common Search & ComparisonCompared for entry-level software development roles in bioinformatics

While both roles involve working with biological data, an Internship Bioinformatics Software Engineer focuses on developing software tools and algorithms, often requiring programming skills and software development knowledge. A Bioinformatics Data Analyst primarily analyzes biological data, using statistical and data visualization tools. The internship provides hands-on experience in coding and software creation, whereas a data analyst role emphasizes data interpretation and reporting.

What does an Internship Bioinformatics Software Engineer do?

An Internship Bioinformatics Software Engineer assists in developing and maintaining software tools used to analyze biological data, such as DNA sequences or protein structures. They often work under the supervision of senior engineers and scientists to write code, troubleshoot issues, and implement algorithms for biological research. Interns may also help process large datasets, visualize results, and collaborate with interdisciplinary teams. This role provides hands-on experience in both software development and the application of computational methods to biological problems.

What types of projects do Internship Bioinformatics Software Engineers typically work on, and how do these projects contribute to their professional development?

Internship Bioinformatics Software Engineers often work on projects involving the development and optimization of software tools for analyzing large biological datasets, such as genomic sequences or protein structures. These projects frequently require collaboration with biologists and data scientists, offering valuable exposure to interdisciplinary teamwork. Interns may be tasked with writing code, testing algorithms, or visualizing data, all of which build practical skills in both software engineering and bioinformatics. This hands-on experience not only enhances technical proficiency but also helps interns better understand real-world applications in life sciences, setting a strong foundation for future career growth.

What are the key skills and qualifications needed to thrive as an Internship Bioinformatics Software Engineer, and why are they important?

To thrive as an Internship Bioinformatics Software Engineer, you need a foundational understanding of programming (often in Python, R, or Java), basic knowledge of molecular biology or genomics, and current pursuit of a degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools (such as BLAST, Bioconductor, or Galaxy), version control systems like Git, and experience analyzing biological datasets are typically expected. Strong problem-solving abilities, attention to detail, and effective communication skills help interns collaborate and learn in multidisciplinary teams. These skills and qualities ensure interns can contribute to meaningful research, adapt quickly to new technologies, and facilitate teamwork in complex scientific environments.
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Internship Bioinformatics Software Engineer jobs near you
Infographic showing various Internship Bioinformatics Software Engineer job openings in the United States as of May 2026, with employment types broken down into 82% Full Time, and 18% Contract. Highlights an 88% Physical, 3% Hybrid, and 9% Remote job distribution, with an average salary of $52,867 per year, or $25.4 per hour.
Computer Science/Bioinformatics Intern

Computer Science/Bioinformatics Intern

Axle Informatics LLC

Rockville, MD • On-site

$19.50 - $25.75/hr

Internship

Posted 14 days ago

Job description

Company Description
Axle Informatics is an information technology company that offers innovative computer services, informatics, and enterprise solutions to research centers and healthcare organizations around the globe. With experts in software engineering, bioinformatics and program management, we focus on developing and applying technology tools and techniques to empower decision-making and accelerate the discovery in translational research.
We have developed multiple software programs and applications specialized for different types of research facilities & universities aimed at optimizing laboratory operations. Our solutions encompass sample management, data acquisition and processing, reporting, and scientific data management. Axle's solutions increase productivity, elevate experimental data quality, and reduce lab process' documentation time.
We work with some of the top research organizations and facilities in the country including multiple institutes at the National Institutes of health (NIH), which means candidates will be receiving the best on-the-job training possible in this field.
Job Description
Computer Science/Bioinformatics Internship Program / Spring 2016 / Rockville, MD
Axle Informatics is looking for a student who is detail-oriented and a quick-learner to be the next intern in a high-performing, fast-paced IT environment
What you'll be doing:
  • Attaining hands-on experience with developing both front and back-end bioinformatics software.
  • Assist in development of software using a variety of languages (ex: Java, R, JavaScript, Perl, Python, Ruby).
  • Designing new features and performance enhancements for existing systems.
  • Participate in testing and fixing bugs in existing written codes
  • Developing a guide detailing program limitations to aid in future analysis of investigator datasets.
  • Help develop effective pipelines to manage and visualize scientific datasets
  • Gaining on-site work experience at various locations within the NIH

Who you are:
  • Demonstrated interest and understanding in computer science or bioinformatics disciplines
  • Familiarity with HTML, CSS, Java, R, JavaScript, Perl, Python, Ruby.
  • You're hungry to learn. Give you data, tools and resources and let you soar!
  • You want to apply what you're learning directly to your work to make your job easier.
  • You aim to simplify your work processes by finding patterns and making your work efficient
  • You care about the quality of your work and are adamant in ensuring things are flowing smoothly
  • Strong work ethic and coolness under pressure in a "live" environment.

Qualifications
Skills we'd love for you to have (but not required):
  • Performing statistical data analysis with MATLAB and/or R.
  • Basic knowledge of MySQL and SQL reporting techniques.
  • Understanding of AngularJS, Node.js and Bootstrap within a dynamic content environment
  • Familiarity with Microsoft SharePoint
  • Ability to learn quickly and multitask in a fast-paced environment. Extreme attention to detail.

Requirements:
  • Junior or senior BA/BS or working towards a MS, Postbaccalaureate or PhD candidate in Bioinformatics, Computer Science, or related field.
  • Able to work independently at times and be able to give 20 hours/week.
  • Ability to work under independently, just as well as general supervision.
  • The ability to work in a team environment with changing priorities.

Additional Information
We're looking for someone to see the work to be done and top it, to move fast and find solutions, and to get the job done each and every day. If you draw energy from working with a small, dedicated team, then Axle is for you.
* If you have any questions, give us a call at (301) 637-6868 to discuss our exciting internship programs and see if Axle is a good fit for the next step in your career!

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