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Internship Bioinformatics Software Engineer Jobs in Maryland

micro1 AI

Bioinformatics Software Engineer

Baltimore, MD · Remote

$80 - $110/hr

Analyze and interpret small-molecule and drug discovery datasets using advanced computational biology, bioinformatics, and cheminformatics methods. * Curate, annotate, and validate chemical and ...

Axle

Bioinformatics Scientist

Bethesda, MD · On-site

With experts in biomedical science, software engineering, and program management, we focus on ... Bioinformatics Scientist To be considered for this position, please upload a document as your Cover ...

Axle

Bioinformatics Scientist

Bethesda, MD · On-site

With experts in biomedical science, software engineering, and program management, we focus on ... Bioinformatics Scientist To be considered for this position, please upload a document as your Cover ...

Axle

Bioinformatics Scientist

Bethesda, MD · On-site

With experts in biomedical science, software engineering, and program management, we focus on ... Bioinformatics Scientist To be considered for this position, please upload a document as your Cover ...

BCC-NIH

Software Developer (C++, Python)

Bethesda, MD · On-site

Overview Black Canyon Consulting (BCC) is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and ...

BCC-NIH

Software Developer (C++, Python)

Bethesda, MD · On-site +1

Overview Black Canyon Consulting (BCC) is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and ...

Axle

Bioinformatics/Data Scientist

Frederick, MD

With experts in biomedical science, software engineering, and program management, we focus on ... Axle is seeking a Bioinformatics/Data Scientist to join our vibrant team at the National Institutes ...

Axle

Bioinformatics/Data Scientist

Frederick, MD · On-site

With experts in biomedical science, software engineering, and program management, we focus on ... Axle is seeking a Bioinformatics/Data Scientist to join our vibrant team at the National Institutes ...

Axle

Bioinformatics/Data Scientist

Frederick, MD · On-site

With experts in biomedical science, software engineering, and program management, we focus on ... Axle is seeking a Bioinformatics/Data Scientist to join our vibrant team at the National Institutes ...

BCC-NIH

Program Principal Engineer

Bethesda, MD · Hybrid

... NCBI bioinformatics software and information retrieval systems * Work with a diverse group of ... Programming experience in a Linux environment * Proficiency in C++ * Experience with MS SQL server ...

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Internship Bioinformatics Software Engineer information

What does an internship bioinformatics software engineer do?

An Internship Bioinformatics Software Engineer assists in developing and maintaining software tools used to analyze biological data, such as DNA sequences or protein structures. They often work under the supervision of senior engineers and scientists to write code, troubleshoot issues, and implement algorithms for biological research. Interns may also help process large datasets, visualize results, and collaborate with interdisciplinary teams. This role provides hands-on experience in both software development and the application of computational methods to biological problems.

What are the key skills and qualifications needed to thrive as an internship bioinformatics software engineer?

To thrive as an Internship Bioinformatics Software Engineer, you need a foundational understanding of programming (often in Python, R, or Java), basic knowledge of molecular biology or genomics, and current pursuit of a degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools (such as BLAST, Bioconductor, or Galaxy), version control systems like Git, and experience analyzing biological datasets are typically expected. Strong problem-solving abilities, attention to detail, and effective communication skills help interns collaborate and learn in multidisciplinary teams. These skills and qualities ensure interns can contribute to meaningful research, adapt quickly to new technologies, and facilitate teamwork in complex scientific environments.

What types of projects do internship bioinformatics software engineers typically work on?

Internship Bioinformatics Software Engineers often work on projects involving the development and optimization of software tools for analyzing large biological datasets, such as genomic sequences or protein structures. These projects frequently require collaboration with biologists and data scientists, offering valuable exposure to interdisciplinary teamwork. Interns may be tasked with writing code, testing algorithms, or visualizing data, all of which build practical skills in both software engineering and bioinformatics. This hands-on experience not only enhances technical proficiency but also helps interns better understand real-world applications in life sciences, setting a strong foundation for future career growth.

What is the difference between Internship Bioinformatics Software Engineer vs Bioinformatics Data Analyst?

AspectInternship Bioinformatics Software Engineer
Required CredentialsEnrolled in or recent graduate of Computer Science, Bioinformatics, or related fields
Work EnvironmentResearch labs, biotech companies, or academic institutions
Employer & Industry UsageUsed in biotech, pharmaceutical, and research organizations for software development
Common Search & ComparisonCompared for entry-level software development roles in bioinformatics

While both roles involve working with biological data, an Internship Bioinformatics Software Engineer focuses on developing software tools and algorithms, often requiring programming skills and software development knowledge. A Bioinformatics Data Analyst primarily analyzes biological data, using statistical and data visualization tools. The internship provides hands-on experience in coding and software creation, whereas a data analyst role emphasizes data interpretation and reporting.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in Maryland?

The most popular types of Bioinformatics Software Engineer jobs in Maryland are:

What are popular job titles related to Internship Bioinformatics Software Engineer jobs in Maryland?

For Internship Bioinformatics Software Engineer jobs in Maryland, the most frequently searched job titles are:

What job categories do people searching Internship Bioinformatics Software Engineer jobs in Maryland look for?

The top searched job categories for Internship Bioinformatics Software Engineer jobs in Maryland are:

Internship Bioinformatics Software Engineer jobs near you
Infographic showing various Internship Bioinformatics Software Engineer job openings in Maryland as of June 2026, with employment types broken down into 97% Full Time, 2% Part Time, and 1% Contract. Highlights an 90% Physical, 1% Hybrid, and 9% Remote job distribution.

Bioinformatics Systems Integration Lead Engineer

GeneDx, Inc

Gaithersburg, MD

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Re-posted 26 days ago

GeneDx rating

9.3

Company rating: 9.3 out of 10

Based on 5 frontline employees who took The Breakroom Quiz

4th of 120 rated laboratories

Job description

Company Description

GeneDx is a rapidly growing CAP and CLIA certified diagnostic genetic testing laboratory for molecular genetics. Our historic mission has been to make clinical diagnostic testing available for people with genetic conditions and their families. We apply cutting edge technologies that provide a wide array of molecular genetic diagnostic tests, including whole exome sequencing and next generation sequencing panels. To learn more about GeneDx, please visit our website at www.genedx.com.

Job Description

GeneDx is seeking a Lead Engineer - Bioinformatics Systems Integration (FT, 40 hours) to work at our Gaithersburg, MD location, Monday through Friday, 8:30 a.m. to 5:00 p.m.

Role: The Lead Engineer - Bioinformatics Systems Integration will be responsible for the deployment, integration, and support of bioinformatics applications for genomic testing operations across GenPath and GeneDx. This position will also be responsible for optimization and modernization of existing systems and processes. He or she will additionally serve as the liaison between the GenPath genomics production laboratory and the assay development team at GeneDx.

Essential Duties:

  • Works closely with the assay development, clinical, wet lab, and IT teams to bring new assays into production
  • Gathers requirements, designs high-level workflows, anticipates business needs, and estimates timelines for GenPath bioinformatics projects
  • Creates and improves existing testing and deployment frameworks for bioinformatics software development
  • Optimizes existing systems (pipelines, databased, etc.) to improve scalability and maintainability
  • Contributes to the development of software for new assay implementation
  • Establishes and implements policies for bioinformatics software validations and releases and other related activities
  • Mentors jurior developers in best coding practices and general career development
  • Supervises GenPath laboratory informatics software engineers supporting and transitioning from legacy systems (Filemaker, MS Access)
  • Supports LIS system development and integration at GenPath; LIS development is performed by a third party
  • Travels up to 10-20% (maximum 2 days every other week) to GenPath at BioReference Laboratories in Elmwood Park, NJ
Qualifications

Qualifications:

  • BS or MS in Bioinformatics, Computer Science, or a related field
  • 10+ years professional software development experience
  • 5+ years leadership experience
  • 5+ years experience in genomics/bioinformatics software development
  • Proficiency in at least one major scripting language (Perl, Python)
  • Proficiency in relational database engineering (Postgres, MySQL, etc.)
  • Proficiency in Linux shell
  • Proficiency with Git version control or another modern version control system
  • Experience with HPC or cloud computing (Slurm, AWS, SGE, etc.)
  • Broad knowledge of modern genomic assay technologies and data (NGS, aCGH, etc.)
Additional Information

All your information will be kept confidential according to EEO guidelines.

Benefits include:

  • Paid Time Off (vacation, sick, personal, holiday, jury duty, bereavement leave)
  • Health, dental, vision, life insurance, LT/ST disability plans
  • Flexible Spending Account (FSA)
  • Health Savings Account (HSA)
  • 401K retirement savings plan with a 4% company match and immediate vesting
  • Tuition Assistance
  • Employee Discounts (cell phone service, movie tickets, etc.)
  • Regular performance appraisals
  • Many promotions from within

Business casual, dog-friendly work environment

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