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Internship Bioinformatics Software Engineer Jobs

MyOme

Bioinformatics Software Engineer

San Francisco, CA · On-site

$130K - $160K/yr

As a Bioinformatics Software Engineer, you will build scalable, cloud-based pipelines that power genomic and clinical data analysis in a real-world healthcare setting. You will combine strong ...

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Internship Bioinformatics Software Engineer information

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How much do internship bioinformatics software engineer jobs pay per hour?

As of Aug 11, 2026, the average hourly pay for internship bioinformatics software engineer in the United States is $25.42, according to ZipRecruiter salary data. Most workers in this role earn between $20.67 and $28.85 per hour, depending on experience, location, and employer.

What is the difference between Internship Bioinformatics Software Engineer vs Bioinformatics Data Analyst?

AspectInternship Bioinformatics Software Engineer
Required CredentialsEnrolled in or recent graduate of Computer Science, Bioinformatics, or related fields
Work EnvironmentResearch labs, biotech companies, or academic institutions
Employer & Industry UsageUsed in biotech, pharmaceutical, and research organizations for software development
Common Search & ComparisonCompared for entry-level software development roles in bioinformatics

While both roles involve working with biological data, an Internship Bioinformatics Software Engineer focuses on developing software tools and algorithms, often requiring programming skills and software development knowledge. A Bioinformatics Data Analyst primarily analyzes biological data, using statistical and data visualization tools. The internship provides hands-on experience in coding and software creation, whereas a data analyst role emphasizes data interpretation and reporting.

What does an internship bioinformatics software engineer do?

An Internship Bioinformatics Software Engineer assists in developing and maintaining software tools used to analyze biological data, such as DNA sequences or protein structures. They often work under the supervision of senior engineers and scientists to write code, troubleshoot issues, and implement algorithms for biological research. Interns may also help process large datasets, visualize results, and collaborate with interdisciplinary teams. This role provides hands-on experience in both software development and the application of computational methods to biological problems.

What types of projects do internship bioinformatics software engineers typically work on?

Internship Bioinformatics Software Engineers often work on projects involving the development and optimization of software tools for analyzing large biological datasets, such as genomic sequences or protein structures. These projects frequently require collaboration with biologists and data scientists, offering valuable exposure to interdisciplinary teamwork. Interns may be tasked with writing code, testing algorithms, or visualizing data, all of which build practical skills in both software engineering and bioinformatics. This hands-on experience not only enhances technical proficiency but also helps interns better understand real-world applications in life sciences, setting a strong foundation for future career growth.

What are the key skills and qualifications needed to thrive as an internship bioinformatics software engineer?

To thrive as an Internship Bioinformatics Software Engineer, you need a foundational understanding of programming (often in Python, R, or Java), basic knowledge of molecular biology or genomics, and current pursuit of a degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools (such as BLAST, Bioconductor, or Galaxy), version control systems like Git, and experience analyzing biological datasets are typically expected. Strong problem-solving abilities, attention to detail, and effective communication skills help interns collaborate and learn in multidisciplinary teams. These skills and qualities ensure interns can contribute to meaningful research, adapt quickly to new technologies, and facilitate teamwork in complex scientific environments.
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Internship Bioinformatics Software Engineer jobs near you
Infographic showing various Internship Bioinformatics Software Engineer job openings in the United States as of August 2026, with employment types broken down into 1% Internship, 87% Full Time, 8% Part Time, and 4% Contract. Highlights an 87% Physical, 4% Hybrid, and 9% Remote job distribution, with an average salary of $52,867 per year, or $25.4 per hour.

Senior Bioinformatics Software Engineer

Morpheus Group

Houston, TX

Full-time

Posted 13 days ago

Job description

We are seeking an experienced Senior/Staff-Level Bioinformatics Software Engineer to provide technical leadership in the design, development, and enhancement of advanced bioinformatics software solutions. This role combines software engineering, computational biology, and data science expertise to support genomic data analysis, next-generation sequencing (NGS) workflows, and the development of scalable analytical platforms.
Key Responsibilities
  • Architect and develop innovative bioinformatics applications, analytical tools, and data processing solutions.
  • Lead the creation and optimization of genomic analysis pipelines focused on sequence interpretation, variant detection, and complex biological data analysis.
  • Partner with scientists, researchers, and cross-functional stakeholders to design studies, analyze results, and translate biological requirements into software solutions.
  • Drive technical strategy and contribute to architectural decisions for current and future software platforms.
  • Improve development processes through automation, best practices, and modern engineering methodologies.
  • Mentor engineering team members and serve as a technical resource across projects. Desired Qualifications
  • Strong background in bioinformatics software development with expertise in NGS data analysis and genomic workflows.
  • Experience working with common bioinformatics formats and tools, including sequencing alignment, variant analysis, and quality control frameworks.
  • Advanced programming skills in Python, R, or similar languages used in scientific computing.
  • Proficiency with Linux environments, cloud computing platforms, and workflow orchestration tools.
  • Experience with software development best practices, source control, testing methodologies, and containerized environments.
  • Excellent communication, leadership, and collaboration skills with the ability to work effectively across scientific and technical teams.

Background
  • Bachelor's degree in Computer Science, Bioinformatics, Data Science, Statistics, Mathematics, or a related field required; advanced degrees preferred.
  • Approximately 7+ years of experience in software engineering, bioinformatics, computational biology, or a related discipline, including demonstrated technical leadership.

This opportunity is ideal for a bioinformatics professional who enjoys leading complex technical initiatives, building scalable genomics solutions, and working at the intersection of software engineering and life sciences