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$43K

$131.1K

$238.5K

How much do temporary bioinformatics software engineer jobs pay per year?

As of Jun 7, 2026, the average yearly pay for temporary bioinformatics software engineer in the United States is $131,053.00, according to ZipRecruiter salary data. Most workers in this role earn between $96,000.00 and $157,000.00 per year, depending on experience, location, and employer.

What is the difference between Temporary Bioinformatics Software Engineer vs Bioinformatics Data Analyst?

AspectTemporary Bioinformatics Software EngineerBioinformatics Data Analyst
CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related fieldBachelor's or Master's in Bioinformatics, Biology, or related field
Work EnvironmentProject-based, software development teams, research labsData interpretation, reporting, research teams
Industry UsageBiotech, pharma, research institutionsHealthcare, research, biotech

Temporary Bioinformatics Software Engineers focus on developing and maintaining bioinformatics tools and pipelines, often working in software development environments. Bioinformatics Data Analysts primarily interpret and analyze biological data, providing insights for research or clinical decisions. While both roles require bioinformatics knowledge, their core responsibilities and work settings differ.

What types of projects and collaborations can a Temporary Bioinformatics Software Engineer expect to be involved in?

As a Temporary Bioinformatics Software Engineer, you will typically work on short-term projects such as developing or maintaining data analysis pipelines, optimizing algorithms for genomic data processing, or integrating software tools with laboratory information management systems. Collaboration is frequent with research scientists, data analysts, and other engineers, often through agile project teams or cross-functional meetings. The fast-paced nature of temporary roles means you’ll need to quickly adapt to new codebases, contribute to ongoing research, and communicate technical findings effectively. This can be a great opportunity to build specialized skills, expand your professional network, and gain exposure to the latest advancements in bioinformatics.

What are the key skills and qualifications needed to thrive as a Temporary Bioinformatics Software Engineer, and why are they important?

To thrive as a Temporary Bioinformatics Software Engineer, you need a solid background in computer science, biology, and programming languages such as Python, R, or Java, often with a degree in bioinformatics or a related field. Familiarity with bioinformatics tools, databases (e.g., BLAST, Ensembl), and experience using version control systems like Git are typically required. Strong analytical thinking, adaptability, and effective communication are crucial for collaborating with multidisciplinary teams and handling changing project needs. These skills enable efficient development and maintenance of software solutions that support complex biological data analysis in a fast-paced, project-driven environment.

What does a Temporary Bioinformatics Software Engineer do?

A Temporary Bioinformatics Software Engineer develops and maintains software tools and applications used in biological and genomic research, typically for a specific short-term project or to cover a staffing gap. They collaborate with scientists to analyze data, automate workflows, and ensure the accuracy of computational methods. Their work often involves writing code, managing databases, and troubleshooting technical issues related to the processing of biological data. Temporary roles usually focus on delivering specific features or supporting research within a defined timeframe.
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Temporary Bioinformatics Software Engineer jobs near you
Infographic showing various Temporary Bioinformatics Software Engineer job openings in the United States as of May 2026, with employment types broken down into 1% Locum Tenens, 1% Internship, 88% Full Time, 4% Temporary, and 6% Contract. Highlights an 88% Physical, 3% Hybrid, and 9% Remote job distribution, with an average salary of $131,053 per year, or $63 per hour.

Bioinformatics Software Engineer

AccuraGen

San Jose, CA • On-site

Full-time

Medical, Dental, Vision, Retirement, PTO

Posted 2 days ago

Job description

As a Bioinformatics Software Engineer at AccuraGen, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. Your contributions will directly impact innovative scientific discoveries and product development. You'll collaborate closely with scientists, engineers, and researchers, contributing your technical expertise to streamline processes, maintain automation, and drive our bioinformatics capabilities forward.
Responsibilities:
  • Design, implement, and develop tests and documentation for established robust bioinformatics pipelines.
  • Optimize computational workflows for high-performance execution and reproducible data analysis.
  • Maintain, monitor, and improve pipeline automation to ensure smooth operational workflows.
  • Manage GitHub repositories, oversee version control, and streamline the software release process.
  • Develop and manage infrastructure on AWS to ensure scalability, reliability, and efficiency.
  • Collaborate with cross-functional teams to integrate bioinformatics solutions.
  • Proactively identify opportunities to enhance infrastructure efficiency and security.

Requirements
Qualifications:
    • Bachelor's degree or higher in Bioinformatics, Computational Biology, Computer Science, or a related field. with at least 3+ years of working experience out of college.
    • Experience with bioinformatics workflow development and optimization, particularly using Nextflow.
    • Experience developing software following best practices, including comprehensive testing and clear documentation.
    • Proficiency in scripting languages (Python, Bash) and familiarity with container technologies (Docker, Kubernetes).
    • Hands-on experience with AWS cloud computing services (EC2, S3, Batch, Lambda).
    • Excellent communication and collaborative skills.

Preferred Qualifications:
  • Familiarity with CI/CD practices.
  • Experience with infrastructure-as-code (Terraform, CloudFormation).

Benefits
  • Health Care Plan (Medical, Dental & Vision)
  • Retirement Plan (401k, IRA)
  • Paid Time Off (Vacation, Sick & Public Holidays)

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