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Internship Bioinformatics Software Engineer Jobs in Chicago, IL

BiomeSense

Senior Bioinformatics Engineer

Chicago, IL · On-site

$125K - $200K/yr

Senior Bioinformatics Engineer Compensation: $125K - $200K base + 0.25% - 0.5% equity stock options ... Position Help build our MetaBiome platform, a software solution for collecting, curating ...

Danaher

Software Engineer Internships

Aurora, IL

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

Danaher

Software Engineer Internships

Aurora, IL · On-site

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

Danaher

Software Engineer Internships

Chicago, IL · On-site

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

Danaher

Software Engineer Internships

Gary, IN · On-site

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

Danaher

Software Engineer Internships

Hammond, IN · On-site

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

RBN Chicago

Lead Software Engineer

Chicago, IL · On-site

Hire, mentor and manage software engineers and interns from the Computer Science department Coordinate development projects across distributed teams Actively engage with our R&D group to explore new ...

RBN

Lead Software Engineer

Chicago, IL

Hire, mentor and manage software engineers and interns from the Computer Science department Coordinate development projects across distributed teams Actively engage with our R&D group to explore new ...

Next Step Systems

Software Engineer

Northbrook, IL · On-site

Software Engineer, Northbrook, IL The selected Software Engineer will become part of the team ... internship is a plus. - Familiarity of data integrity, regression, performance testing ...

Tempus

Senior Software Engineer II, Data Products

Chicago, IL · On-site

$126K - $166K/yr

The Role As a Senior Software Engineer II on the Data Products team, you will act as a technical ... bioinformatics scientists, ML and Agent developers to rapidly develop, deploy, and operate their ...

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All JobsBioinformatics Software Engineer JobsInternship Bioinformatics Software Engineer JobsInternship Bioinformatics Software Engineer Jobs in Chicago, IL

Internship Bioinformatics Software Engineer information

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How much do internship bioinformatics software engineer jobs pay per hour?

As of Aug 2, 2026, the average hourly pay for internship bioinformatics software engineer in Chicago, IL is $26.18, according to ZipRecruiter salary data. Most workers in this role earn between $21.30 and $29.71 per hour, depending on experience, location, and employer.

What is the difference between Internship Bioinformatics Software Engineer vs Bioinformatics Data Analyst?

AspectInternship Bioinformatics Software Engineer
Required CredentialsEnrolled in or recent graduate of Computer Science, Bioinformatics, or related fields
Work EnvironmentResearch labs, biotech companies, or academic institutions
Employer & Industry UsageUsed in biotech, pharmaceutical, and research organizations for software development
Common Search & ComparisonCompared for entry-level software development roles in bioinformatics

While both roles involve working with biological data, an Internship Bioinformatics Software Engineer focuses on developing software tools and algorithms, often requiring programming skills and software development knowledge. A Bioinformatics Data Analyst primarily analyzes biological data, using statistical and data visualization tools. The internship provides hands-on experience in coding and software creation, whereas a data analyst role emphasizes data interpretation and reporting.

What does an Internship Bioinformatics Software Engineer do?

An Internship Bioinformatics Software Engineer assists in developing and maintaining software tools used to analyze biological data, such as DNA sequences or protein structures. They often work under the supervision of senior engineers and scientists to write code, troubleshoot issues, and implement algorithms for biological research. Interns may also help process large datasets, visualize results, and collaborate with interdisciplinary teams. This role provides hands-on experience in both software development and the application of computational methods to biological problems.

What types of projects do Internship Bioinformatics Software Engineers typically work on, and how do these projects contribute to their professional development?

Internship Bioinformatics Software Engineers often work on projects involving the development and optimization of software tools for analyzing large biological datasets, such as genomic sequences or protein structures. These projects frequently require collaboration with biologists and data scientists, offering valuable exposure to interdisciplinary teamwork. Interns may be tasked with writing code, testing algorithms, or visualizing data, all of which build practical skills in both software engineering and bioinformatics. This hands-on experience not only enhances technical proficiency but also helps interns better understand real-world applications in life sciences, setting a strong foundation for future career growth.

What are the key skills and qualifications needed to thrive as an Internship Bioinformatics Software Engineer, and why are they important?

To thrive as an Internship Bioinformatics Software Engineer, you need a foundational understanding of programming (often in Python, R, or Java), basic knowledge of molecular biology or genomics, and current pursuit of a degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools (such as BLAST, Bioconductor, or Galaxy), version control systems like Git, and experience analyzing biological datasets are typically expected. Strong problem-solving abilities, attention to detail, and effective communication skills help interns collaborate and learn in multidisciplinary teams. These skills and qualities ensure interns can contribute to meaningful research, adapt quickly to new technologies, and facilitate teamwork in complex scientific environments.
What are the most commonly searched types of Bioinformatics Software Engineer jobs in Chicago, IL? The most popular types of Bioinformatics Software Engineer jobs in Chicago, IL are:
What are popular job titles related to Internship Bioinformatics Software Engineer jobs in Chicago, IL? For Internship Bioinformatics Software Engineer jobs in Chicago, IL, the most frequently searched job titles are:
What job categories do people searching Internship Bioinformatics Software Engineer jobs in Chicago, IL look for? The top searched job categories for Internship Bioinformatics Software Engineer jobs in Chicago, IL are:
What cities near Chicago, IL are hiring for Internship Bioinformatics Software Engineer jobs? Cities near Chicago, IL with the most Internship Bioinformatics Software Engineer job openings:
Internship Bioinformatics Software Engineer jobs near you
Infographic showing various Internship Bioinformatics Software Engineer job openings in Chicago, IL as of July 2026, with employment types broken down into 4% As Needed, 69% Full Time, 11% Part Time, 1% Temporary, 1% Contract, and 14% Nights. Highlights an 82% Physical, 3% Hybrid, and 15% Remote job distribution, with an average salary of $54,460 per year, or $26.2 per hour.

Senior Bioinformatics Engineer

BiomeSense

Chicago, IL • On-site

$125K - $200K/yr

Full-time

Re-posted 11 days ago

Job description

Senior Bioinformatics Engineer
Compensation: $125K – $200K base +  0.25% - 0.5% equity stock options
About BiomeSense
BiomeSense is a life sciences startup applying gut microbiome (GMB) technologies (GutLab, MetaBiome) to advance personalized medicine. We partner with UCSF, UCSD, NIH & the University of Chicago & are backed by LabCorp Ventures, Bluestein Ventures, Seerave Foundation & Emil Capital Partners.
Position
Help build our MetaBiome platform, a software solution for collecting, curating & analyzing longitudinal GMB & health data at scale. Own the infra, pipelines & analytical workflows that turn raw sequencing data into intelligence, with room to grow into a platform leader.
Responsibilities:
  • Bioinformatics Architecture & Infrastructure - design, implement & maintain auditable backend for GMB data from raw shotgun metagenomic sequencing
  • Data Engineering – build & maintain cloud infra: databases, distributed computing workflows & REST endpoints for microbial sequence & clinical metadata
  • Statistical Analysis – Lead design, execution & documentation of reproducible computational experiments end-to-end
  • Methods Development – Develop & implement novel analytical methodologies & algorithms informed by experimental findings & validated via rigorous evaluation
  • Frontend / Backend Development – Design & implement robust data ingestion interfaces leveraging APIs & clinical ontologies, following best practices

Qualifications
Required
  • B.S. /M.S. /PhD in Computational Biology, Bioinformatics or a related field with 3+ yrs industry experience (biotech start-up ideal)
  • Proficiency in Python & JavaScript & experience in production-quality software
  • PostgreSQL or other relational SQL database proficiency
  • Familiarity with clinical ontologies (SNOMED, ICD-11, ATC, LOINC)
  • Familiarity with AWS & best practices in computer security
  • Proficiency with modern frontend web technologies
  • Excellent communication; translates complex scientific concepts to diverse stakeholders
  • Strong ownership mindset & the ability to execute in fast-moving environments
  • Expertise in bioinformatics pipelines, QC & reproducibility

Preferred
  • NGS data experience
  • Familiarity with longitudinal / repeated-measures biological datasets & GMB-specific challenges (compositional data, variability, confounders)
  • Experience integrating ontologies / standardized vocabularies
  • Exposure to cloud infrastructure, workflow orchestration or containerization
  • Interest in AI/ML for large biological datasets

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