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Bioinformatics Software Engineer Jobs (NOW HIRING)

Arc Institute

Scientist, Bioinformatics

Palo Alto, CA · On-site

They are seeking a Bioinformatics Scientist to develop and implement computational approaches for ... software engineering practices. • Run the production pipelines for large-scale production ...

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$43K

$131.1K

$238.5K

How much do bioinformatics software engineer jobs pay per year?

As of Jul 17, 2026, the average yearly pay for bioinformatics software engineer in the United States is $131,053.00, according to ZipRecruiter salary data. Most workers in this role earn between $96,000.00 and $157,000.00 per year, depending on experience, location, and employer.

What is a Bioinformatics Software Engineer job?

A Bioinformatics Software Engineer develops and maintains software tools, algorithms, and databases for analyzing biological data, such as genomic sequences and protein structures. They work at the intersection of computer science and biology, using programming languages like Python, Java, or R to process and interpret large-scale biological datasets. Their role is crucial in fields like genomics, drug discovery, and personalized medicine, where computational solutions help researchers derive meaningful insights from complex biological information.

What are the typical daily responsibilities of a Bioinformatics Software Engineer?

As a Bioinformatics Software Engineer, your day-to-day responsibilities typically include designing, developing, and maintaining software tools or pipelines for analyzing biological data such as DNA, RNA, or protein sequences. You may collaborate closely with researchers and scientists to understand biological problems and translate them into computational solutions, reviewing and optimizing code for efficiency and scalability. Troubleshooting data processing issues, integrating new algorithms, and contributing to documentation are also common tasks. Additionally, you might participate in cross-functional meetings and keep up with emerging technologies and trends in the field.

What are the key skills and qualifications needed to thrive in the Bioinformatics Software Engineer position, and why are they important?

To thrive as a Bioinformatics Software Engineer, you need a strong background in software development (especially with Python, R, or C++), algorithm design, and biological data analysis, usually supported by a degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools, databases (like NCBI or Ensembl), version control systems (such as Git), and experience with cloud computing or high-performance computing environments is highly valued. Strong problem-solving skills, attention to detail, and the ability to collaborate effectively with biologists and data scientists set candidates apart. These competencies are crucial for efficiently developing reliable software solutions that support complex biological research and data-driven discoveries.

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Bioinformatics Software Engineer jobs near you
Bioinformatics Software Engineer

Bioinformatics Software Engineer

MyOme

San Francisco, CA

$130K - $160K/yr

Full-time

Medical, Dental, Vision, Retirement, PTO

Re-posted 27 days ago

Job description

MyOme's mission is to provide clinically actionable genetic information to patients throughout their lives. We combine clinical-grade whole genome sequencing, advanced AI methods for genome interpretation, and seamless digital tools for doctors and patients to order and access results. Our team is composed of seasoned entrepreneurs, scientists, and operators, and we're backed by top-tier investors.

Position Overview:

MyOme is looking for a talented and experienced bioinformatics software engineer to join the team. As a Bioinformatics Software Engineer, you will build scalable, cloud-based pipelines that power genomic and clinical data analysis in a real-world healthcare setting. You will combine strong engineering practices with bioinformatics expertise to develop reliable, production-grade systems that support clinical decision-making and advance precision medicine.

What You'll Do:

  • Build, test, and maintain a suite of robust bioinformatics tools, workflows, and analysis modules.
  • Work in a team to scope, define, and articulate solutions to complex computing and information management challenges at the forefront of modern bioinformatics.
  • Contribute to the architecture and operations of our computing infrastructure.
  • Contribute to the team through code reviews and design discussions
  • Participate in agile development processes, including sprint planning, retrospectives, and continuous improvement
  • Balance quick wins with long-term technical sustainability
  • As a well-rounded engineer, participate in all aspects of the development process and be interested in our mission.

What You'll Need:

  • No specific degree required - if you can do the work well and collaborate with humility, we want to hear from you.
  • 2+ years of experience building and managing bioinformatics workflows (e.g., Nextflow, Snakemake, WDL, CWL).
  • Proven experience optimizing and scaling bioinformatics pipelines for performance and reliability.
  • Proficient in Python, with bonus points for experience in other programming languages.
  • First-hand experience working with bioinformatics tools, databases, and file formats used in sequence analysis.
  • Comfortable with modern development practices - version control, unit testing, CI/CD, and code reviews.
  • Hands-on experience with Linux/Unix and cloud infrastructure (AWS, Docker, Kubernetes, etc.).
  • Thrive in a fast-moving startup - you know when to prototype quickly and when to build production-grade systems.

Location, Compensation, and Benefits:

  • Location: Hybrid role, 2 days a week onsite at our San Francisco, CA office (near Montgomery BART). Occasional travel required for team meetings.
  • Compensation: Annual base salary range of $130,000 - $160,000, based on experience.
San Francisco Bay Area pay range
$130,000—$160,000 USD

Benefits:

  • Comprehensive healthcare coverage (Health, Dental, and Vision)
  • 401K
  • Unlimited PTO
  • Professional development opportunities
  • Company-sponsored off-sites and team meals during in-person meetings
  • Direct access to company leadership and the opportunity for career growth

Diversity, Inclusion, and Equal Opportunity:
MyOme values diversity in all forms. We believe that diverse perspectives drive better science and better patient outcomes. We are an Equal Opportunity Employer committed to creating an inclusive workplace that empowers every individual.

Why Work at MyOme?
Join us if you:

  • Want to make an impact at the intersection of healthcare and technology, changing the way people engage with their health at the genetic level
  • Enjoy rolling up your sleeves, taking initiative, and being empowered to lead
  • Value humility, transparency, and collaborative problem-solving
  • Thrive in fast-moving, dynamic environments with smart, driven teammates
  • Appreciate competitive compensation, meaningful equity, and excellent benefits

Learn More: myome.com

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About MyOme

Sourced by ZipRecruiter

Industry

Biotechnology research and development

Company size

11 - 50 Employees

Headquarters location

Palo Alto, CA, US

Year founded

2017

View All MyOme Jobs