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Bioinformatics Software Engineer Jobs in New York

NYULMC

Senior Bioinformatics Programmer

New York, NY · On-site

Sc. plus a minimum of 3 years' experience in Bioinformatics, Computer Science, Programming, Software Development, or related field Previous experience with NGS data and associated bioinformatics ...

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Bioinformatics Software Engineer information

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$47K

$143.4K

$260.9K

How much do bioinformatics software engineer jobs pay per year?

As of Jul 19, 2026, the average yearly pay for bioinformatics software engineer in New York is $143,376.00, according to ZipRecruiter salary data. Most workers in this role earn between $105,000.00 and $171,800.00 per year, depending on experience, location, and employer.

What is a Bioinformatics Software Engineer job?

A Bioinformatics Software Engineer develops and maintains software tools, algorithms, and databases for analyzing biological data, such as genomic sequences and protein structures. They work at the intersection of computer science and biology, using programming languages like Python, Java, or R to process and interpret large-scale biological datasets. Their role is crucial in fields like genomics, drug discovery, and personalized medicine, where computational solutions help researchers derive meaningful insights from complex biological information.

What are the typical daily responsibilities of a Bioinformatics Software Engineer?

As a Bioinformatics Software Engineer, your day-to-day responsibilities typically include designing, developing, and maintaining software tools or pipelines for analyzing biological data such as DNA, RNA, or protein sequences. You may collaborate closely with researchers and scientists to understand biological problems and translate them into computational solutions, reviewing and optimizing code for efficiency and scalability. Troubleshooting data processing issues, integrating new algorithms, and contributing to documentation are also common tasks. Additionally, you might participate in cross-functional meetings and keep up with emerging technologies and trends in the field.

What are the key skills and qualifications needed to thrive in the Bioinformatics Software Engineer position, and why are they important?

To thrive as a Bioinformatics Software Engineer, you need a strong background in software development (especially with Python, R, or C++), algorithm design, and biological data analysis, usually supported by a degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools, databases (like NCBI or Ensembl), version control systems (such as Git), and experience with cloud computing or high-performance computing environments is highly valued. Strong problem-solving skills, attention to detail, and the ability to collaborate effectively with biologists and data scientists set candidates apart. These competencies are crucial for efficiently developing reliable software solutions that support complex biological research and data-driven discoveries.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in New York? The most popular types of Bioinformatics Software Engineer jobs in New York are:
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Bioinformatics Software Engineer jobs near you
Bioinformatics Software Engineer II, Pathology and Lab Medicine

Bioinformatics Software Engineer II, Pathology and Lab Medicine

Memorial Sloan Kettering Cancer Center

New York, NY • On-site

$100K - $161K/yr

Full-time

Re-posted 7 days ago

Memorial Sloan Kettering Cancer Center rating

8.5

Company rating: 8.5 out of 10

Based on 133 frontline employees who took The Breakroom Quiz

15th of 886 rated healthcare providers

Job description

About Us:
The people of Memorial Sloan Kettering Cancer Center (MSK) are united by a singular mission: ending cancer for life. Our specialized care teams provide personalized, compassionate, expert care to patients of all ages. Informed by basic research done at our Sloan Kettering Institute, scientists across MSK collaborate to conduct innovative translational and clinical research that is driving a revolution in our understanding of cancer as a disease and improving the ability to prevent, diagnose, and treat it. MSK is dedicated to training the next generation of scientists and clinicians, who go on to pursue our mission at MSK and around the globe.
Exciting Opportunity at MSK! Our Pathology and Laboratory Medicine Department is looking for a Bioinformatics Software Engineer to join a dynamic team supporting state-of-the-art molecular diagnostics and cancer genomics programs. You will play a key role in developing software tools, web applications, and data workflows that empower our clinicians and researchers to interpret complex genomic information and advance precision oncology.
Role Overview
• Build web applications and APIs that enable genomic data visualization and clinical reporting
• Collaborate closely with bioinformaticians, laboratory scientists, researchers, and clinicians to translate workflow needs into robust software solutions
• Develop, optimize, and maintain computational workflows for NGS data processing
• Improve performance, scalability, and reliability of existing pipelines and tools
• Ensure data quality, reproducibility, and proper documentation across all projects
Key Qualifications
• BS in Bioinformatics, Computer Science, or related field + 5 years of experience OR MS in Bioinformatics, Computer Science, or related field + 2 years of experience
• Strong programming skills in Python
• Experience in web development (e.g., Flask, Django, React)
• Experience with relational databases (PostgreSQL, MySQL) and/or NoSQL (MongoDB)
• Hands-on experience with containerization (Docker, Kubernetes)
• Familiarity with version control (Git/GitHub) and CI/CD workflows
• Understanding of NGS data analysis workflows
• Strong debugging, analytical, and problem-solving skills
Preferred:
• Experience with cloud computing (AWS, GCP, or Azure)
• Knowledge of cancer genomics, variant calling, and annotation
Core Skills
• Ability to translate scientific and clinical needs into maintainable, well-designed software
• Strong communication skills and comfort collaborating with multidisciplinary teams
• Ability to work in fast-paced research and clinical environments
• Commitment to reproducible, traceable, and well-documented work
Additional Information
• Schedule: hybrid, at least 2 days a week in office, must reside in the NYC metro area
• Location: Joy Building, 321 E 61st Street, NYC
• Reporting to: Manager, Bioinformatics Pathology and Laboratory Medicine
Helpful Links:
  • Compensation Philosophy
  • Benefits

Pay Range: $100,600.00 - $161,000.00
FSLA Status: Exempt
Closing:
At MSK, we believe in fair, competitive pay that reflects your job, experience, and skills.
MSK is an equal opportunity and affirmative action employer committed to diversity and inclusion in all aspects of recruiting and employment. All qualified individuals are encouraged to apply and will receive consideration without regard to race, color, gender, gender identity or expression, sexual orientation, national origin, age, religion, creed, disability, veteran status or any other factor which cannot lawfully be used as a basis for an employment decision.
Federal law requires employers to provide reasonable accommodation to qualified individuals with disabilities. Please tell us if you require a reasonable accommodation to apply for a job or to perform your job. Examples of reasonable accommodation include making a change to the application process or work procedures, providing documents in an alternate format, using a sign language interpreter, or using specialized equipment.

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