ZipRecruiter

Log In

1

Bioinformatics Software Engineer Jobs (NOW HIRING)

BCC-NIH

Software Developer (C++, Python)

Bethesda, MD · On-site +1

Overview Black Canyon Consulting (BCC) is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and ...

BCC-NIH

Software Developer (C++, Python)

Bethesda, MD · On-site

Overview Black Canyon Consulting (BCC) is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and ...

Ariadne

NCBI Software Developer (C++, Python)

Bethesda, MD · On-site +1

$52.25 - $70.50/hr

Overview Ariadne is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and onsite at the NIH in ...

Baylor Genetics

Sr HPC Engineer

Houston, TX · On-site

$96K - $132K/yr

MS with extensive industry experience may be considered. • 8+ years' experience in bioinformatics software engineering, computational genomics, or related field. • 4+ years' experience leading or ...

next page

Showing results 1-20

People also search for

All JobsBioinformatics Software Engineer Jobs

Bioinformatics Software Engineer information

See salary details

$43K

$131.1K

$238.5K

How much do bioinformatics software engineer jobs pay per year?

As of Jun 7, 2026, the average yearly pay for bioinformatics software engineer in the United States is $131,053.00, according to ZipRecruiter salary data. Most workers in this role earn between $96,000.00 and $157,000.00 per year, depending on experience, location, and employer.

What is a Bioinformatics Software Engineer job?

A Bioinformatics Software Engineer develops and maintains software tools, algorithms, and databases for analyzing biological data, such as genomic sequences and protein structures. They work at the intersection of computer science and biology, using programming languages like Python, Java, or R to process and interpret large-scale biological datasets. Their role is crucial in fields like genomics, drug discovery, and personalized medicine, where computational solutions help researchers derive meaningful insights from complex biological information.

What are the typical daily responsibilities of a Bioinformatics Software Engineer?

As a Bioinformatics Software Engineer, your day-to-day responsibilities typically include designing, developing, and maintaining software tools or pipelines for analyzing biological data such as DNA, RNA, or protein sequences. You may collaborate closely with researchers and scientists to understand biological problems and translate them into computational solutions, reviewing and optimizing code for efficiency and scalability. Troubleshooting data processing issues, integrating new algorithms, and contributing to documentation are also common tasks. Additionally, you might participate in cross-functional meetings and keep up with emerging technologies and trends in the field.

What are the key skills and qualifications needed to thrive in the Bioinformatics Software Engineer position, and why are they important?

To thrive as a Bioinformatics Software Engineer, you need a strong background in software development (especially with Python, R, or C++), algorithm design, and biological data analysis, usually supported by a degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools, databases (like NCBI or Ensembl), version control systems (such as Git), and experience with cloud computing or high-performance computing environments is highly valued. Strong problem-solving skills, attention to detail, and the ability to collaborate effectively with biologists and data scientists set candidates apart. These competencies are crucial for efficiently developing reliable software solutions that support complex biological research and data-driven discoveries.

More about Bioinformatics Software Engineer jobs
What cities are hiring for Bioinformatics Software Engineer jobs? Cities with the most Bioinformatics Software Engineer job openings:
What are the most commonly searched types of Bioinformatics Software Engineer jobs? The most popular types of Bioinformatics Software Engineer jobs are:
What states have the most Bioinformatics Software Engineer jobs? States with the most job openings for Bioinformatics Software Engineer jobs include:
What job categories do people searching Bioinformatics Software Engineer jobs look for? The top searched job categories for Bioinformatics Software Engineer jobs are:
What are popular job titles related to Bioinformatics Software Engineer jobs? For Bioinformatics Software Engineer jobs, the most frequently searched job titles are:
Bioinformatics Software Engineer jobs near you
Infographic showing various Bioinformatics Software Engineer job openings in the United States as of May 2026, with employment types broken down into 5% Internship, 5% As Needed, 5% Full Time, and 85% Part Time. Highlights an 88% Physical, 3% Hybrid, and 9% Remote job distribution, with an average salary of $131,053 per year, or $63 per hour.

Senior Software Developer (C++) in Bioinformatics and Big Data

Black Canyon Consulting

Bethesda, MD • On-site, Remote

$58.25 - $77/hr

Other

Medical, Dental, Vision, Retirement, PTO

Posted 10 days ago

Job description

Overview

Black Canyon Consulting (BCC) is searching for a Sr. Software Developer in Bioinformatics and Big Data to support our work for the National Center for Biotechnology Information (NCBI) at the National Library of Medicine (NLM), an institute of the National Institutes of Health. This opportunity is full time and onsite at the NIH-NCBI in Bethesda, MD and/or remote work. 

NCBI, the National Center for Biotechnology Information, the nation's premier biomedical resource, is seeking a software developer to help deliver biological sequence annotation and data curation infrastructure for the nation's foremost sequence and biomedical literature repositories. Sites at NCBI, a part of the National Library of Medicine (NLM) at the National Institutes of Health (NIH), see four million daily users searching for gene sequence data, biomedical journal citations, and a wide array of other information that directly impacts biomedical research and public health. NCBI's annotation pipelines not only serve these diverse expert communities - they actually drive new life sciences discoveries, ranging from medical health (viruses and pandemics, genetic diseases, cancer) to public health (food safety monitoring, antimicrobial resistance, viral outbreaks), to basic research topics in computational biology, bioinformatics and microbial diversity, and many more.

On a technical level, NCBI's wide range of applications, platforms (e.g. node, Python, Django, C++), and applications and environments (petabyte-level big data, multiple cloud providers) serve more users than the US Postal Service and see more traffic than the IRS at tax time. We embrace FAIR principles (Findable, Accessible, Interoperable, Reusable) and are on the cutting edge of civic tech and cloud computing.

This role calls for more than an expert coder and architect - someone who can work equally effectively with subject-matter experts, user researchers, designers, product managers, scientists, security and DevOps engineers, and more. Work with teams of dedicated, skilled developers, researchers, and product professionals as you build robust, flexible solutions serving dozens of production applications, APIs and services. Join us!

We attract the best people in the business with our competitive benefits package that includes medical, dental and vision coverage, 401k plan with employer contribution, paid holidays, vacation, and tuition reimbursement. If you enjoy being a part of a high performing, professional service and technology focused organization, please apply today!

 Duties & Responsibilities:
  • Responsible for the development, implementation, testing, and continued maintenance of NCBI bioinformatics software and information retrieval systems
  • Work with a diverse group of scientists, bioinformaticians and other developers across the center to implement efficient bioinformatics algorithms
  • Learn new technologies, keep up with internal systems, and share your knowledge with the team
Required qualifications:
  • 5+ years of experience handling large amounts of data or working in a distributed computing environment
  • Programming experience in a Linux environment
  • Proficiency in C++
  • Experience with MS SQL server and relational database design and optimization
  • Fluency in some scripting languages such as BASH, csh, Perl, or Python
Preferred qualifications:
  • 5+ years of working with genetic and biological data
  • Proficiency in Python and/or JavaScript and familiarity with their associated ecosystems
  • Experience with MongoDB or other NoSQL database technology
  • Experience with Docker or other containerization mechanisms
  • Experience with CI/CD pipelines, unit testing, integration and regression testing
  • Experience using GitHub
  • Experience with Cloud technologies a strong plus

Apply