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Bioinformatics Software Engineer Jobs in Philadelphia, PA

GSK

Applied AI Engineer

Upper Providence, PA · On-site

... Biology, Bioinformatics, Statistics, Engineering, or a related quantitative discipline; OR equivalent professional experience as a software/ML engineer. * 2+ years of professional experience ...

MSD

Senior Specialist, Data Science

West Point, PA

$129K - $203K/yr

D. or M.S. in Computer Science, Computational Biology, Computational Chemistry, Bioinformatics ... Prompt Engineering, Regulatory Requirements, Software Development, Stakeholder Relationship ...

All JobsBioinformatics Software Engineer JobsBioinformatics Software Engineer Jobs in Philadelphia, PA

Bioinformatics Software Engineer information

See Philadelphia, PA salary details

$43.4K

$132.2K

$240.7K

How much do bioinformatics software engineer jobs pay per year?

As of Aug 1, 2026, the average yearly pay for bioinformatics software engineer in Philadelphia, PA is $132,244.00, according to ZipRecruiter salary data. Most workers in this role earn between $96,900.00 and $158,400.00 per year, depending on experience, location, and employer.

What is a Bioinformatics Software Engineer job?

A Bioinformatics Software Engineer develops and maintains software tools, algorithms, and databases for analyzing biological data, such as genomic sequences and protein structures. They work at the intersection of computer science and biology, using programming languages like Python, Java, or R to process and interpret large-scale biological datasets. Their role is crucial in fields like genomics, drug discovery, and personalized medicine, where computational solutions help researchers derive meaningful insights from complex biological information.

What are the typical daily responsibilities of a Bioinformatics Software Engineer?

As a Bioinformatics Software Engineer, your day-to-day responsibilities typically include designing, developing, and maintaining software tools or pipelines for analyzing biological data such as DNA, RNA, or protein sequences. You may collaborate closely with researchers and scientists to understand biological problems and translate them into computational solutions, reviewing and optimizing code for efficiency and scalability. Troubleshooting data processing issues, integrating new algorithms, and contributing to documentation are also common tasks. Additionally, you might participate in cross-functional meetings and keep up with emerging technologies and trends in the field.

What are the key skills and qualifications needed to thrive in the Bioinformatics Software Engineer position, and why are they important?

To thrive as a Bioinformatics Software Engineer, you need a strong background in software development (especially with Python, R, or C++), algorithm design, and biological data analysis, usually supported by a degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools, databases (like NCBI or Ensembl), version control systems (such as Git), and experience with cloud computing or high-performance computing environments is highly valued. Strong problem-solving skills, attention to detail, and the ability to collaborate effectively with biologists and data scientists set candidates apart. These competencies are crucial for efficiently developing reliable software solutions that support complex biological research and data-driven discoveries.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in Philadelphia, PA? The most popular types of Bioinformatics Software Engineer jobs in Philadelphia, PA are:
What are popular job titles related to Bioinformatics Software Engineer jobs in Philadelphia, PA? For Bioinformatics Software Engineer jobs in Philadelphia, PA, the most frequently searched job titles are:
What job categories do people searching Bioinformatics Software Engineer jobs in Philadelphia, PA look for? The top searched job categories for Bioinformatics Software Engineer jobs in Philadelphia, PA are:
What cities near Philadelphia, PA are hiring for Bioinformatics Software Engineer jobs? Cities near Philadelphia, PA with the most Bioinformatics Software Engineer job openings:
Bioinformatics Software Engineer jobs near you
Infographic showing various Bioinformatics Software Engineer job openings in Philadelphia, PA as of July 2026, with employment types broken down into 14% Locum Tenens, 3% As Needed, 60% Full Time, 10% Part Time, 2% Contract, and 11% Nights. Highlights an 83% Physical, 3% Hybrid, and 14% Remote job distribution, with an average salary of $132,244 per year, or $63.6 per hour.

Scientist-II

Integrated Resources INC

Spring House, PA

Contractor

Re-posted 13 days ago

Job description

Company Description

Integrated Resources, Inc is a premier staffing firm recognized as one of the tri-states most well-respected professional specialty firms. IRI has built its reputation on excellent service and integrity since its inception in 1996. Our mission centers on delivering only the best quality talent, the first time and every time. We provide quality resources in four specialty areas: Information Technology (IT), Clinical Research, Rehabilitation Therapy and Nursing.

Job Description

Duration: 24 Months + Contract

Job description:

  • Experience with high content data analysis, such as RNAseq, whole genome sequencing, and proteomic data is required.
  • Familiarity with human translational research, clinical trial metadata, and experience with predictive models and diagnostics is a plus.
  • The candidate must have a current knowledge of the bioinformatics scientific literature (especially for RNAseq) and strong communication skills.
  • Ability to perform data QC and interface with internal wet laboratory to ensure quality and compliance with appropriate internal policies is a required.
  • Statistical skills and experience with large datasets (gene expression, proteomic data, and NGS), predictive models and diagnostics, network analysis, and clinical trial data are required

Required Skills:

  • Proficiency in standard analytical platforms (e.g., R, Mat lab) as well as, gene set enrichment and pathway analysis software tools (e.g.GSEA/GSVA, Thomson-Reuters GeneGo, Ingenuity, Cytoscape, etc.) is required.
  • Programming skills in Python are highly desired.
  • Strong communication (written and oral presentation) and organization skills, and ability to handle multiple projects simultaneously are essential.
  • Expertise in predictive algorithms and experience in biomarker discovery and/or co-diagnostic development for pharmaceutical applications is preferred.


Qualifications

MS in Bioinformatics or at least 3 years of experience in Computational Biology, Immunology, Statistics, Network Pharmacology / Systems Biology, Bioinformatics or related field. PhD is preferred.

Additional Information

Feel free to forward my email to your friends/colleagues who might be available. we do Provide referral bonus.

Thanks,

Warm Regards,

Nisha

Integrated Resources, Inc.

IT REHAB CLINICAL NURSING

Inc. 5000 - 2007, 2008, 2009, 2010, 2011, 2012 ,2013 and 2014 (8th Year)

Certified MBE I GSA - Schedule 66 I GSA - Schedule 621I I GSA - Schedule 70

Direct: (732)-429-1649

Tel: (732) 549 2030 x 230

Fax: (732) 549 5549

Integrated Resources logo

About Integrated Resources

Sourced by ZipRecruiter

Integrated Resources Inc (IRI), based in Edison, NJ, US, is an esteemed player in the staffing solutions industry with a credible presence on their official website irionline.com. Notably, IRI provides a range of professional staffing services including contract, contract-to-hire, and direct hire solutions to a wide spectrum of industries such as healthcare, life sciences, manufacturing, financial, insurance, and others. Since its inception, IRI has been committed to delivering top-talent and optimum solutions to meet its clients' diverse needs.

Industry

Recruiting and staffing services

Company size

51 - 200 Employees

Headquarters location

Edison, NJ, US

Year founded

1996

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