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Nextflow Bioinformatics Jobs (NOW HIRING)

Axle

Bioinformatics Engineer

Rockville, MD · On-site

... Nextflow workflows for bulk RNA-seq, single-cell RNA-seq, DNA variant calling, methylation analysis, and emerging assay types • Architect scalable solutions capable of processing thousands of ...

Axle

Bioinformatics Engineer

Rockville, MD

Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of ... Develop, extend, and maintain Nextflow workflows for bulk RNA-seq, single-cell RNA-seq, DNA variant ...

Axle

Bioinformatics Engineer

Rockville, MD · On-site

Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of ... Develop, extend, and maintain Nextflow workflows for bulk RNA-seq, single-cell RNA-seq, DNA variant ...

Axle

Bioinformatics Engineer

Rockville, MD

Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of ... Develop, extend, and maintain Nextflow workflows for bulk RNA-seq, single-cell RNA-seq, DNA variant ...

Mithrl

Bioinformatics Engineer, Pipelines

San Francisco, CA · On-site

$150K - $200K/yr

You will architect Nextflow and nf-core style pipelines, implement modality-specific validation and ... Design and maintain production grade bioinformatics pipelines for a wide range of data modalities ...

Baylor Genetics

Lead Bioinformatics Scientist

The Lead Bioinformatics Scientist will play a central role in bioinformatics research and ... tools (Nextflow, Snakemake, Cromwell) and cloud-based computing (Azure, AWS, GCP). o Experienced ...

Mithrl

Bioinformatics Engineer, Pipelines

San Francisco, CA · On-site

$150K - $200K/yr

You will architect Nextflow and nf-core style pipelines, implement modality-specific validation and ... Design and maintain production grade bioinformatics pipelines for a wide range of data modalities ...

Vivo HealthStaff

Bioinformatics Scientist

Winter Park, FL · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Winter Park, FL · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Ann Arbor, MI

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

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Nextflow Bioinformatics information

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$59.5K

$94.5K

$149.5K

How much do nextflow bioinformatics jobs pay per year?

As of Aug 3, 2026, the average yearly pay for nextflow bioinformatics in the United States is $94,474.00, according to ZipRecruiter salary data. Most workers in this role earn between $67,500.00 and $129,500.00 per year, depending on experience, location, and employer.

What is the difference between Nextflow Bioinformatics vs Bioinformatics Analyst?

AspectNextflow BioinformaticsBioinformatics Analyst
CredentialsTypically requires a degree in bioinformatics, computer science, or related fields; familiarity with scripting and workflow management toolsUsually holds a degree in bioinformatics, biology, or related disciplines; strong analytical and programming skills
Work EnvironmentResearch labs, biotech companies, or academic institutions; focuses on developing and executing computational workflowsData analysis in research or clinical settings; interprets biological data and reports findings
Industry UsageUsed in genomics, transcriptomics, and large-scale data processing projectsApplied in research, healthcare, and diagnostics to analyze biological datasets

While both roles require bioinformatics knowledge, Nextflow Bioinformatics specializes in managing and automating computational workflows using tools like Nextflow, whereas Bioinformatics Analysts focus on analyzing biological data and interpreting results. The roles often overlap but differ in technical focus and responsibilities.

What are the key skills and qualifications needed to thrive as a Nextflow Bioinformatics specialist, and why are they important?

To thrive as a Nextflow Bioinformatics specialist, you need a strong background in bioinformatics, scripting languages (such as Python or Bash), and experience with workflow management systems, often supported by a relevant degree in bioinformatics, biology, or computer science. Proficiency with Nextflow, containerization platforms (like Docker or Singularity), and high-performance computing environments is typically required. Problem-solving ability, strong attention to detail, and effective collaboration are critical soft skills in this role. These competencies are essential for developing reproducible, scalable analysis pipelines that drive accurate biological insights in research or clinical settings.

What are some common challenges faced when developing and maintaining Nextflow pipelines in a bioinformatics team?

One common challenge in developing and maintaining Nextflow pipelines is ensuring reproducibility and compatibility across different computing environments, such as local clusters and cloud platforms. Collaborating with team members often involves integrating diverse tools and datasets, which can introduce version conflicts or software dependency issues. Additionally, keeping pipelines up-to-date with rapidly evolving bioinformatics methods requires strong communication and regular code reviews within the team. Effective documentation and modular pipeline design can help address these challenges and streamline collaborative workflows.

What is a Nextflow Bioinformatician?

A Nextflow Bioinformatician is a specialist who uses the Nextflow workflow management system to design, implement, and maintain computational pipelines for analyzing biological data. They typically work with large-scale sequencing datasets, automating processes such as data preprocessing, alignment, variant calling, and more. Their expertise lies in combining programming skills with bioinformatics knowledge to streamline and reproduce complex analyses, often in high-performance or cloud computing environments. This role is critical for ensuring reliable, scalable, and reproducible results in genomics and other life science research.
More about Nextflow Bioinformatics jobs
What cities are hiring for Nextflow Bioinformatics jobs? Cities with the most Nextflow Bioinformatics job openings:
What states have the most Nextflow Bioinformatics jobs? States with the most job openings for Nextflow Bioinformatics jobs include:
What job categories do people searching Nextflow Bioinformatics jobs look for? The top searched job categories for Nextflow Bioinformatics jobs are:
Nextflow Bioinformatics jobs near you
Infographic showing various Nextflow Bioinformatics job openings in the United States as of July 2026, with employment types broken down into 84% Full Time, 13% Part Time, 1% Temporary, and 2% Contract. Highlights an 80% Physical, 3% Hybrid, and 17% Remote job distribution, with an average salary of $94,474 per year, or $45.4 per hour.

Bioinformatics Engineer (Hybrid)

Quest Diagnostics

Baltimore, MD • On-site

$95K/yr

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 20 days ago

ExamOne rating

6.6

Company rating: 6.6 out of 10

Based on 9 frontline employees who took The Breakroom Quiz

97th of 120 rated laboratories

Job description


Pay Range: $95,000.00 - $125,000.00 / year
Salary offers are based on a wide range of factors including relevant skills, training, experience, education, and, where applicable, certifications obtained. Market and organizational factors are also considered. Successful candidates may be eligible to receive annual performance bonus compensation.
Benefits Information:
We are proud to offer best-in-class benefits and programs to support employees and their families in living healthy, happy lives. Our pay and benefit plans have been designed to promote employee health in all respects - physical, financial, and developmental. Depending on whether it is a part-time or full-time position, some of the benefits offered may include:
• Day 1 Medical, supplemental health, dental & vision for FT employees who work 30+ hours
• Best-in-class well-being programs
• Annual, no-cost health assessment program Blueprint for Wellness®
• healthyMINDS mental health program
• Vacation and Health/Flex Time
• 6 Holidays plus 1 "MyDay" off
• FinFit financial coaching and services
• 401(k) pre-tax and/or Roth IRA with company match up to 5% after 12 months of service
• Employee stock purchase plan
• Life and disability insurance, plus buy-up option
• Flexible Spending Accounts
• Annual incentive plans
• Matching gifts program
• Education assistance through MyQuest for Education
• Career advancement opportunities
• and so much more!
About Haystack Oncology
Haystack Oncology, now part of Quest Diagnostics, is a next-generation liquid biopsy company focused on advancing tumor-informed minimal residual disease (MRD) testing. Our proprietary technology enables highly sensitive and specific detection of circulating tumor DNA (ctDNA), improving patient outcomes through earlier detection of residual disease.
As we continue to expand our assay portfolio and bring cutting-edge diagnostics to the public, we are seeking a skilled Bioinformatics Scientist to join our growing team. This role will play a critical part in supporting clinical production testing, clinical trials, and assay R&D for Quest Diagnostics laboratories in the US and Europe.
Role Overview
As a Bioinformatics Scientist, you will develop and maintain cloud-based computational infrastructure for the analysis of genomic data from our proprietary MRD assays. You will work cross-functionally with laboratory, LIMS, and IT teams to ensure seamless integration of bioinformatics workflows with clinical and research operations.
Responsibilities
  • Develop & maintain cloud infrastructure for scalable and efficient genomic data analysis.
  • Implement and optimize Python and Nextflow bioinformatics workflows.
  • Integrate bioinformatics pipelines with Laboratory Information Management Systems (LIMS) to streamline data processing.
  • Ensure compliance with IT security and privacy controls, aligning with Quest Diagnostics' corporate policies.
  • Apply software engineering best practices, contributing to the scalability, robustness, and maintainability of bioinformatics pipelines.
  • Develop and manage databases and applications for quality control (QC) and assay performance monitoring.
  • Document and validate bioinformatics systems in compliance with regulatory and quality standards for clinical diagnostics

Qualifications
Required:
  • Background in software or infrastructure engineering, with experience in bioinformatics.
  • Proficiency in bioinformatics pipeline workflow management, particularly Nextflow (preferred), Cromwell, or CWL.
  • Hands-on experience developing cloud-native infrastructure (AWS preferred) for storage, batch computing, and serverless applications.
  • Expertise in infrastructure as code (IaC) technologies such as Terraform or AWS CDK.
  • Strong programming skills in Python, JavaScript/TypeScript, R, or other relevant scripting languages.
  • Experience with API development and integration, particularly JSON-based RESTful APIs.
  • Deep understanding of version control (Git), CI/CD best practices, and software development lifecycle (SDLC).
  • Ability to work cross-functionally in a multi-disciplinary environment with minimal supervision.
  • Strong problem-solving, analytical, and troubleshooting skills, with the ability to diagnose and resolve technical issues.
  • Excellent verbal and written communication skills in English, with the ability to translate technical concepts for non-technical stakeholders.

Preferred:
  • Experience in a clinical diagnostics or regulated environment (e.g., CLIA, CAP, IVDR, FDA) with knowledge of software validation and regulatory requirements.
  • Understanding of controlled processes, environment management, and quality control systems in a clinical setting.
  • Familiarity with DevOps methodologies.

Education:
  • Bachelor's Degree (Required)
  • Master's Degree (Preferred

About the Team
Quest Diagnostics honors our service members and encourages veterans to apply.
While we appreciate and value our staffing partners, we do not accept unsolicited resumes from agencies. Quest will not be responsible for paying agency fees for any individual as to whom an agency has sent an unsolicited resume.
Equal Opportunity Employer: Race/Color/Sex/Sexual Orientation/Gender Identity/Religion/National Origin/Disability/Vets or any other legally protected status.

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