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Bioinformatics Ontology Jobs (NOW HIRING)

Axle

Data Science Fellow - AI/NLP

Rockville, MD

... ontology grounding, computational biology, and human-in-the-loop curation. Potential projects ... PhD in computer science, computational biology, bioinformatics, biomedical informatics, NLP ...

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Local POI Knowledge Graph

Mountain View, CA · On-site

$142K - $342K/yr

POI / places data systems, schema, and ontology for local businesses and listings. * Own entity resolution and entity linking across multiple, conflicting data sources. * Build merchant / listing ...

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Local POI Knowledge Graph

Mountain View, CA

$142K/yr

POI / places data systems, schema, and ontology for local businesses and listings. * Own entity resolution and entity linking across multiple, conflicting data sources. * Build merchant / listing ...

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Bioinformatics Ontology information

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$59.5K

$94.5K

$149.5K

How much do bioinformatics ontology jobs pay per year?

As of Jul 19, 2026, the average yearly pay for bioinformatics ontology in the United States is $94,474.00, according to ZipRecruiter salary data. Most workers in this role earn between $67,500.00 and $129,500.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a Bioinformatics Ontologist, and why are they important?

To thrive as a Bioinformatics Ontologist, you need a strong background in biology, bioinformatics, and knowledge representation, often supported by a degree in bioinformatics, computer science, or a related field. Familiarity with ontology development tools (such as Protégé), semantic web technologies (like OWL and RDF), and databases is essential, along with experience in standards such as Gene Ontology. Attention to detail, analytical thinking, and effective communication are vital soft skills for building and maintaining complex ontologies and collaborating with multidisciplinary teams. These competencies ensure the creation of reliable, interoperable ontological resources that advance data integration and discovery in the life sciences.

How does a Bioinformatics Ontology professional typically collaborate with domain experts and software engineers on a project?

Bioinformatics Ontology professionals often serve as a bridge between subject matter experts, such as biologists, and technical teams like software engineers. They work closely with domain experts to accurately capture and represent biological concepts, ensuring that the ontology reflects current scientific understanding. Simultaneously, they collaborate with software engineers to integrate ontologies into databases and applications, facilitating effective data retrieval and interoperability. Strong communication and project management skills are essential in this role, as collaboration is continuous throughout a project's lifecycle.

What is bioinformatics ontology?

Bioinformatics ontology is a structured framework that organizes and defines the relationships between biological and biomedical concepts, such as genes, proteins, diseases, and experimental methods. These ontologies help standardize terminology and enable consistent data annotation, integration, and sharing across different databases and research studies. They play a crucial role in facilitating computational analysis and interoperability in bioinformatics by providing a common language for researchers. Examples include the Gene Ontology (GO) and Disease Ontology, which are widely used in genomics and medical research.

What is the difference between Bioinformatics Ontology vs Bioinformatics Analyst?

AspectBioinformatics OntologyBioinformatics Analyst
Required CredentialsTypically requires a background in bioinformatics, computer science, or biology; familiarity with ontologies and data modelingBachelor's or master's in bioinformatics, biology, or related fields; programming skills beneficial
Work EnvironmentResearch labs, academic institutions, or bioinformatics tool development teamsHealthcare, research institutions, biotech companies, analyzing biological data
Employer & Industry UsageUsed in data annotation, knowledge representation, and database integration within bioinformaticsData analysis, interpretation, and reporting in biological research and clinical settings

Bioinformatics Ontology focuses on developing structured frameworks for biological data, while Bioinformatics Analysts interpret and analyze this data to support research and decision-making. Both roles are essential but serve different functions within the bioinformatics field.

More about Bioinformatics Ontology jobs
What cities are hiring for Bioinformatics Ontology jobs? Cities with the most Bioinformatics Ontology job openings:
What states have the most Bioinformatics Ontology jobs? States with the most job openings for Bioinformatics Ontology jobs include:
What job categories do people searching Bioinformatics Ontology jobs look for? The top searched job categories for Bioinformatics Ontology jobs are:
Bioinformatics Ontology jobs near you
Infographic showing various Bioinformatics Ontology job openings in the United States as of July 2026, with employment types broken down into 87% Full Time, 11% Part Time, 1% Temporary, and 1% Contract. Highlights an 82% Physical, 2% Hybrid, and 16% Remote job distribution, with an average salary of $94,474 per year, or $45.4 per hour.
Scientist III Bioinformatics, Knowledge Management

Scientist III Bioinformatics, Knowledge Management

Thermo Fisher Scientific

Grand Island, NY • On-site

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Re-posted 4 days ago

Thermo Fisher Scientific rating

7.7

Company rating: 7.7 out of 10

Based on 415 frontline employees who took The Breakroom Quiz

196th of 528 rated manufacturers

Job description

Work Schedule
Standard (Mon-Fri)
Environmental Conditions
Office
Job Description
As part of the Thermo Fisher Scientific team, you'll discover meaningful work that makes a positive impact on a global scale. Join our colleagues in bringing our Mission to life every single day to enable our customers to make the world healthier, cleaner and safer. We provide our global teams with the resources needed to achieve individual career goals while helping to take science a step beyond by developing solutions for some of the world's toughest challenges, like protecting the environment, making sure our food is safe or helping find cures for cancer.
How will you make an impact?
We are seeking to hire a highly motivated Bioinformatics Scientist with hands-on experience in knowledgebase management. The successful candidate will join a multi-functional team and help support the expansion and maintenance of an in-house biological knowledge database, with a focus on metabolic pathways, knowledge extraction, and structured knowledgebase development. The successful candidate will combine a strong cell biology foundation with bioinformatics and database skills and an understanding of upstream bioprocessing applications. Working in a collaborative environment, you'll contribute to innovative projects while supporting our mission of enabling customers to make the world healthier, cleaner, and safer.
What will you do?
  • Expand, curate, and maintain an in-house biological knowledge database focused on metabolic pathways, cellular processes, and related biological features.
  • Extract, evaluate, and organize biological knowledge from approved scientific, technical, and internal sources into structured knowledge assets.
  • Analyze biological data and computational outputs to ensure biological relevance, accuracy, and consistency within the knowledge base.
  • Collaborate with scientists, bioinformatics, and digital technology teams to support knowledge extraction, pathway interpretation, and upstream bioprocessing applications.

How will you get here?
Education
  • Master's Degree in Bioinformatics, Computational Biology, Systems Biology, Molecular Biology, Cell Biology, Biochemistry, Biotechnology, or a related biological science field. PhD is preferred but not required.

Experience
  • At least three (3) years of related experience
  • Strong background in cell biology, molecular biology, biochemistry, or a related life science discipline, with an understanding of cellular metabolism and biological pathways.
  • Experience working with biological databases, bioinformatics tools, biological data analysis, or scientific data management.
  • Knowledge of upstream bioprocessing, including cell culture, fermentation, process development, media optimization, or biologics manufacturing workflows.

Knowledge, Skills, Abilities
  • Hands-on experience with Python or other scripting languages for biological data processing, workflow automation, or data analysis.
  • Experience with knowledge extraction, text mining, NLP, knowledge graphs, ontology-based data models, or biological network analysis.
  • Present data for review, group discussions, and team meetings
  • Multi-task effectively and prioritize multiple projects with guidance.
  • Proven track record that could work efficiently both independently and as part of a team.
  • Excellent verbal and written communication skills..
  • Ability to work in a cross-functional and interdisciplinary team.

Preferred Qualifications
  • Experience with metabolic pathway analysis and pathway resources such as KEGG, Reactome, MetaCyc, WikiPathways, UniProt, or Gene Ontology.
  • Experience evaluating outputs from computational algorithms, machine learning models, knowledge graph systems, RAG, or LLM-based workflows

Compensation and Benefits
The salary range estimated for this position based in New York is $87,200.00-$116,200.00.
This position may also be eligible to receive a variable annual bonus based on company, team, and/or individual performance results in accordance with company policy. We offer a comprehensive Total Rewards package that our U.S. colleagues and their families can count on, which includes:
  • A choice of national medical and dental plans, and a national vision plan, including health incentive programs
  • Employee assistance and family support programs, including commuter benefits and tuition reimbursement
  • At least 120 hours paid time off (PTO), 10 paid holidays annually, paid parental leave (3 weeks for bonding and 8 weeks for caregiver leave), accident and life insurance, and short- and long-term disability in accordance with company policy
  • Retirement and savings programs, such as our competitive 401(k) U.S. retirement savings plan
  • Employees' Stock Purchase Plan (ESPP) offers eligible colleagues the opportunity to purchase company stock at a discount

For more information on our benefits, please visit: https://jobs.thermofisher.com/global/en/total-rewards

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