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Nextflow Bioinformatics Jobs in Oregon (NOW HIRING)

OR · On-site

$93K - $140K/yr

Scientist II, Field Applications Bioinformatics Support PacBio (NASDAQ: PACB) is a premier life ... Experience with WDL/snakemake/nextflow * Previous work with CRM platforms is a plus, in particular ...

OR

$122K - $161K/yr

We're looking for a Senior Software V&V Engineer who understands bioinformatics pipelines deeply ... Testing experience with pipeline orchestration tools such as Nextflow. * Hands-on exposure to ...

Nextflow Bioinformatics information

What is the difference between Nextflow Bioinformatics vs Bioinformatics Analyst?

AspectNextflow BioinformaticsBioinformatics Analyst
CredentialsTypically requires a degree in bioinformatics, computer science, or related fields; familiarity with scripting and workflow management toolsUsually holds a degree in bioinformatics, biology, or related disciplines; strong analytical and programming skills
Work EnvironmentResearch labs, biotech companies, or academic institutions; focuses on developing and executing computational workflowsData analysis in research or clinical settings; interprets biological data and reports findings
Industry UsageUsed in genomics, transcriptomics, and large-scale data processing projectsApplied in research, healthcare, and diagnostics to analyze biological datasets

While both roles require bioinformatics knowledge, Nextflow Bioinformatics specializes in managing and automating computational workflows using tools like Nextflow, whereas Bioinformatics Analysts focus on analyzing biological data and interpreting results. The roles often overlap but differ in technical focus and responsibilities.

What skills and qualifications are needed to thrive as a Nextflow bioinformatics specialist?

To thrive as a Nextflow Bioinformatics specialist, you need a strong background in bioinformatics, scripting languages (such as Python or Bash), and experience with workflow management systems, often supported by a relevant degree in bioinformatics, biology, or computer science. Proficiency with Nextflow, containerization platforms (like Docker or Singularity), and high-performance computing environments is typically required. Problem-solving ability, strong attention to detail, and effective collaboration are critical soft skills in this role. These competencies are essential for developing reproducible, scalable analysis pipelines that drive accurate biological insights in research or clinical settings.

What are common challenges when developing and maintaining Nextflow pipelines in a bioinformatics team?

One common challenge in developing and maintaining Nextflow pipelines is ensuring reproducibility and compatibility across different computing environments, such as local clusters and cloud platforms. Collaborating with team members often involves integrating diverse tools and datasets, which can introduce version conflicts or software dependency issues. Additionally, keeping pipelines up-to-date with rapidly evolving bioinformatics methods requires strong communication and regular code reviews within the team. Effective documentation and modular pipeline design can help address these challenges and streamline collaborative workflows.

What is a Nextflow bioinformatician?

A Nextflow Bioinformatician is a specialist who uses the Nextflow workflow management system to design, implement, and maintain computational pipelines for analyzing biological data. They typically work with large-scale sequencing datasets, automating processes such as data preprocessing, alignment, variant calling, and more. Their expertise lies in combining programming skills with bioinformatics knowledge to streamline and reproduce complex analyses, often in high-performance or cloud computing environments. This role is critical for ensuring reliable, scalable, and reproducible results in genomics and other life science research.
What cities in Oregon are hiring for Nextflow Bioinformatics jobs? Cities in Oregon with the most Nextflow Bioinformatics job openings:
Infographic showing various Nextflow Bioinformatics job openings in Oregon as of August 2026, with employment types broken down into 56% Full Time, 42% Part Time, and 2% Contract. Highlights an 52% Physical, 2% Hybrid, and 46% Remote job distribution.

Scientist II, Field Applications Bioinformatics Support

PacBio

Portland, OR • On-site

$93K - $140K/yr

Full-time

Posted 10 days ago


Job description

Scientist II, Field Applications Bioinformatics Support


PacBio (NASDAQ: PACB) is a premier life science technology company that designs, develops, and manufactures advanced sequencing solutions to help scientists and clinical researchers resolve genetically complex problems. Our mission is to enable the promise of genomics to better human health. Genomics is core to all biological processes, and our advanced genomics tools provide scientists and clinical researchers the insights to better understand biology and health.


We are looking for an experienced bioinformatics support scientist with a strong customer focus to enable and support data analysis for our customers and collaborators. In this role, they will be responsible to train customers for PacBio data analysis, support customers pre- and post-sales, perform data analysis, and function as a link between customers and PacBio.


The candidate will combine bioinformatics, molecular biology, and software expertise. The ability to communicate with customers and internal teams are important aspects of this role. Our ideal candidate is a well-rounded top performer who can be a key contributor in a fast-pacing commercial environment, interacting with customers, scientists, and engineers from a wide variety of backgrounds.


Essential duties and responsibilities:

  • Assist and enable customers and collaborators to ensure successful use of PacBio data analysis software
  • Train customers on PacBio HiFi sequencing data characteristics and analysis tools, including SMRT Link software
  • Be the primary contact for customers to understand their sequencing data
  • Ensure timely bioinformatics and software assistance in response to customer inquiries
  • Support sales in conducting scientific presentations, technical discussions, and customer meetings
  • Work closely with application specialists, sales, service engineers, and technical support
  • Provide customer feedback to product marketing and software development
  • Support roll-out of new software and assist with software installations
  • Work with customers and internal teams (FAS, service engineers, tech support) to prepare new instruments installations
  • The role is field based, and up to 20% travel for onsite support and training is expected

Required Qualifications:

  • MSc/PhD in life sciences (molecular biology, biochemistry), bioinformatics, or related field
  • 2+ years' experience in bioinformatics, data management or tech support, ideally in life sciences industry
  • Well-experienced with high throughput DNA sequencing data analyses and pipelines.
  • Knowledge of state-of-the-art sequence analysis tools and workflows, such as sequence alignment, variant calling, de novo assembly, genome visualization, transcript mapping
  • Understanding of Unix systems administration, networking, and large-scale compute hardware
  • Experience with bash scripting, Python, and R
  • Excellent troubleshooting capabilities, and experience with good practice in customer support
  • Track record of conducting scientific presentations in person and virtually to internal and external audiences
  • Excellent verbal, written, and interpersonal communication skills
  • Strong time management, organizational and planning skills
  • Great cross-functional team player
  • Customer-focused mindset with the empathy to understand different levels of customers
  • Good networking and customer relationship building skills
  • Ability to work in a fast paced and growing commercial environment.
  • Valid driver's license with a clean driving record.
  • Live near an international airport

Preferred Experience:

  • Experience with PacBio data and tools
  • Experience with WDL/snakemake/nextflow
  • Previous work with CRM platforms is a plus, in particular Salesforce
  • Proven ability and motivation to work independently, i.e., in a home office-based position
  • Wet lab experience and basic knowledge of DNA sequencing instruments and library preparation protocols is a plus

Candidates must have current authorization to work in the United States without the need for present or future sponsorship.


You may be required from time to time to visit and work at PacBio locations and for such times as the Company considers necessary for the proper performance of your duties.


All listed tasks and responsibilities are deemed as essential functions to this position; however, business conditions may require reasonable accommodations for additional tasks and responsibilities.


All qualified applicants will receive consideration for employment without regard to race, sex, color, religion, national origin, protected veteran status, or on the basis of disability, gender identity, and sexual orientation.


#LI-Remote

Salary Range:

$93,400.00 - $140,000.00


To all Staffing and Recruiting Agencies: Our Careers Site is only for individuals seeking a job at PacBio. Staffing and recruiting agencies and individuals being represented by an agency are not authorized to use this site or to submit profiles, applications or resumes, and any such submissions will be considered unsolicited. PacBio does not accept unsolicited resumes or applications from agencies. Please do not forward resumes to our jobs alias, PacBio employees or any other company location. PacBio is not responsible for any fees related to unsolicited resumes/applications.


All qualified applicants will receive consideration for employment without regard to race, sex, color, religion, national origin, protected veteran status, or on the basis of disability, gender identity, and sexual orientation.

If you are an individual with a disability and require a reasonable accommodation to complete any part of the application process, or are limited in the ability or unable to access or use this online application process and need an alternative method for applying, you may contact us at 650-521-8000, or careers@pacificbiosciences.com for assistance.

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