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Nextflow Bioinformatics Jobs (NOW HIRING)

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Ann Arbor, MI · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required.Sequencing Data:

Natera

Director of Data Science and Bioinformatics

OR · On-site +1

In this role, you will build the bioinformatics capability within the Data Science development team ... Experience with MLOps frameworks and pipeline tools (MLflow, Nextflow, WDL, Docker). * Advanced ...

Celcuity Inc.

$110 - $120/hr

Implement and validate newly identified bioinformatics analytical advances using bioinformatics practices for reproducible and modular analysis (markdown documentation, r/v env locks, git, nextflow ...

Caris MPI, Inc.

Scientist - Bioinformatics

Phoenix, AZ · On-site

$120 - $180/hr

... Nextflow is preferred.Skills in statistical analysis and data visualization with statistical ... bioinformatics to build and maintain large scale pipelines.Physical DemandsMust possess ability to ...

Linn Products, Inc

Bioinformatics Scientist

Minneapolis, MN · On-site

$110K - $120K/yr

Implement and validate newly identified bioinformatics analytical advances using bioinformatics practices for reproducible and modular analysis (markdown documentation, r/v env locks, git, nextflow ...

Celcuity Inc.

Bioinformatics Scientist

Minneapolis, MN · On-site

$110 - $120/hr

Implement and validate newly identified bioinformatics analytical advances using bioinformatics practices for reproducible and modular analysis (markdown documentation, r/v env locks, git, nextflow ...

Axle

Bioinformatics Scientist

Bethesda, MD · On-site

Bioinformatics Scientist To be considered for this position, please upload a document as your Cover ... Snakemake, Nextflow, CWL/WDL * Expertise building technical and user documentation for tools ...

ZS

Bioinformatics Leader

Boston, MA · On-site

$200K - $229K/yr

Deep, hands-on proficiency in bioinformatics tools and programming languages (e.g., Python, R, Nextflow, Snakemake) and experience with cloud-based compute environments * Domain expertise in at least ...

Celcuity

Bioinformatics Scientist

Minneapolis, MN · On-site

$110K - $120K/yr

Implement and validate newly identified bioinformatics analytical advances using bioinformatics practices for reproducible and modular analysis (markdown documentation, r/v env locks, git, nextflow ...

IQVIA

Scientist II, Bioinformatics

Santa Fe, NM

... Nextflow, Snakemake, or equivalent * Maintain complete documentation in Benchling and version ... PhD in Bioinformatics, Computational Biology, Computer Science, Molecular Biology, Immunology ...

Axle

Bioinformatics Scientist

Bethesda, MD

Bioinformatics Scientist To be considered for this position, please upload a document as your Cover ... Snakemake, Nextflow, CWL/WDL * Expertise building technical and user documentation for tools ...

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Nextflow Bioinformatics information

See salary details

$59.5K

$94.5K

$149.5K

How much do nextflow bioinformatics jobs pay per year?

As of Aug 23, 2026, the average yearly pay for nextflow bioinformatics in the United States is $94,474.00, according to ZipRecruiter salary data. Most workers in this role earn between $67,500.00 and $129,500.00 per year, depending on experience, location, and employer.

What is a Nextflow bioinformatician?

A Nextflow Bioinformatician is a specialist who uses the Nextflow workflow management system to design, implement, and maintain computational pipelines for analyzing biological data. They typically work with large-scale sequencing datasets, automating processes such as data preprocessing, alignment, variant calling, and more. Their expertise lies in combining programming skills with bioinformatics knowledge to streamline and reproduce complex analyses, often in high-performance or cloud computing environments. This role is critical for ensuring reliable, scalable, and reproducible results in genomics and other life science research.

What skills and qualifications are needed to thrive as a Nextflow bioinformatics specialist?

To thrive as a Nextflow Bioinformatics specialist, you need a strong background in bioinformatics, scripting languages (such as Python or Bash), and experience with workflow management systems, often supported by a relevant degree in bioinformatics, biology, or computer science. Proficiency with Nextflow, containerization platforms (like Docker or Singularity), and high-performance computing environments is typically required. Problem-solving ability, strong attention to detail, and effective collaboration are critical soft skills in this role. These competencies are essential for developing reproducible, scalable analysis pipelines that drive accurate biological insights in research or clinical settings.

What are common challenges when developing and maintaining Nextflow pipelines in a bioinformatics team?

One common challenge in developing and maintaining Nextflow pipelines is ensuring reproducibility and compatibility across different computing environments, such as local clusters and cloud platforms. Collaborating with team members often involves integrating diverse tools and datasets, which can introduce version conflicts or software dependency issues. Additionally, keeping pipelines up-to-date with rapidly evolving bioinformatics methods requires strong communication and regular code reviews within the team. Effective documentation and modular pipeline design can help address these challenges and streamline collaborative workflows.

What is the difference between Nextflow Bioinformatics vs Bioinformatics Analyst?

AspectNextflow BioinformaticsBioinformatics Analyst
CredentialsTypically requires a degree in bioinformatics, computer science, or related fields; familiarity with scripting and workflow management toolsUsually holds a degree in bioinformatics, biology, or related disciplines; strong analytical and programming skills
Work EnvironmentResearch labs, biotech companies, or academic institutions; focuses on developing and executing computational workflowsData analysis in research or clinical settings; interprets biological data and reports findings
Industry UsageUsed in genomics, transcriptomics, and large-scale data processing projectsApplied in research, healthcare, and diagnostics to analyze biological datasets

While both roles require bioinformatics knowledge, Nextflow Bioinformatics specializes in managing and automating computational workflows using tools like Nextflow, whereas Bioinformatics Analysts focus on analyzing biological data and interpreting results. The roles often overlap but differ in technical focus and responsibilities.

More about Nextflow Bioinformatics jobs

What cities are hiring for Nextflow Bioinformatics jobs?

Cities with the most Nextflow Bioinformatics job openings:

What states have the most Nextflow Bioinformatics jobs?

States with the most job openings for Nextflow Bioinformatics jobs include:

What job categories do people searching Nextflow Bioinformatics jobs look for?

The top searched job categories for Nextflow Bioinformatics jobs are:

Nextflow Bioinformatics jobs near you
Infographic showing various Nextflow Bioinformatics job openings in the United States as of August 2026, with employment types broken down into 46% Full Time, 53% Part Time, and 1% Contract. Highlights an 41% Physical, 2% Hybrid, and 57% Remote job distribution, with an average salary of $94,474 per year, or $45.4 per hour.

Bioinformatics Scientist

Vivo HealthStaff

Boston, MA

$170K - $190K/yr

Full-time

Re-posted 11 days ago

Job description

Bioinformatics Scientist (Mid/Senior)

Compensation: $170,000 - $190,000

Location: South San Francisco, CA

Job Type: Full-time (Hybrid)

Equity: Highly Competitive Equity

About Our Client

TechStaffers has partnered with one of our clients & they are on a mission to accelerate new cures and promote a healthier planet by unlocking a new level of productivity for scientists. Their sequencing services are used daily by thousands of innovators, including Nobel laureates, Fortune 100 pharma, and over 70,000 scientists. They began by revolutionizing plasmid sequencing, making it exponentially cheaper and faster. Now, they are expanding that same disruptive model across all of genomics, including a new RNA-seq service, to provide scientists everywhere with faster and more affordable access to data. Every team member plays a crucial role in driving the future of biotech research, building the world's most efficient sequencing engine that operates overnight and scales globally.

Position Overview

We are seeking a highly motivated mid- to senior-level Bioinformatics Scientist to work on the bioinformatics engine that powers this impact. This role is heavily bioinformatics-focused, emphasizing deep domain expertise and the building of scalable products over general software platform skills. You will wear many hats, leading projects from concept through production while maintaining strong ownership of your work.

Key Responsibilities

  • Build blazing-fast, production-grade bioinformatics workflows that process thousands of samples per day.
  • Develop novel algorithms that turn raw sequencing data into fast, intuitive, and accurate insights.
  • Hunt down bugs and tame the chaos of real-world sequencing data, including biological artifacts and platform quirks.
  • Translate bioinformatics outputs into a dynamic scientific UX that feels magical to researchers.
  • Stay on top of cutting-edge tools and find creative ways to integrate them into real-world pipelines.
  • Mentor teammates and grow your own skills in a fast-moving, collaborative environment.

Qualifications & Requirements

  • Education: PhD in Bioinformatics, Computer Science, Statistics, Biology, Biochemistry, Physics, or a closely related field.
  • Experience: 3+ years of experience developing production bioinformatics pipelines.
  • Industry Background: Minimum of 2 years of industry experience; candidates whose only experience is in academia will not be considered.
  • Domain Expertise: Strong background in microbial ecology or related fields, with a distinct preference for expertise in microbial genomics.
  • Technical Tools: Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required.
  • Sequencing Data: Hands-on work with Illumina or Oxford Nanopore sequencing platforms.
  • Product Impact: Proven experience building scalable bioinformatics products and clear evidence of delivering impactful, independent projects.
  • Bonus: Contribution of a novel bioinformatics tool or algorithm is highly regarded as a signal of a top-tier candidate.

Ideal Candidate Profile

  • Thrives with high agency and high ownership, leading projects from idea to production.
  • Exhibits strong leadership qualities, initiative, and a clear motivation to advance their career.
  • Is curious about the intersection of biology, algorithms, and software engineering.
  • Gets excited knowing their work directly accelerates the next generation of medicines and biotechnology.
  • Values clear communication and loves helping others level up.
  • Is energized by a tight-knit, fast-paced team environment.

Visa Requirements

  • Visa sponsorship is generally not available.
  • Able to accommodate TN or H-1B1
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About Vivo HealthStaff

Sourced by ZipRecruiter

Vivo HealthStaff provides permanent recruitment services for both clinical and administrative positions in the healthcare sector. Over the past 2 years, our clients have seen a 98% retention rate with Vivo HealthStaff placements.

Industry

Health care and social assistance

Company size

11 - 50 Employees

Headquarters location

Dublin, CA, US

Year founded

2016

Social media

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