1

Nextflow Bioinformatics Jobs in Indiana (NOW HIRING)

Nextflow Bioinformatics information

What is the difference between Nextflow Bioinformatics vs Bioinformatics Analyst?

AspectNextflow BioinformaticsBioinformatics Analyst
CredentialsTypically requires a degree in bioinformatics, computer science, or related fields; familiarity with scripting and workflow management toolsUsually holds a degree in bioinformatics, biology, or related disciplines; strong analytical and programming skills
Work EnvironmentResearch labs, biotech companies, or academic institutions; focuses on developing and executing computational workflowsData analysis in research or clinical settings; interprets biological data and reports findings
Industry UsageUsed in genomics, transcriptomics, and large-scale data processing projectsApplied in research, healthcare, and diagnostics to analyze biological datasets

While both roles require bioinformatics knowledge, Nextflow Bioinformatics specializes in managing and automating computational workflows using tools like Nextflow, whereas Bioinformatics Analysts focus on analyzing biological data and interpreting results. The roles often overlap but differ in technical focus and responsibilities.

What are the key skills and qualifications needed to thrive as a Nextflow Bioinformatics specialist, and why are they important?

To thrive as a Nextflow Bioinformatics specialist, you need a strong background in bioinformatics, scripting languages (such as Python or Bash), and experience with workflow management systems, often supported by a relevant degree in bioinformatics, biology, or computer science. Proficiency with Nextflow, containerization platforms (like Docker or Singularity), and high-performance computing environments is typically required. Problem-solving ability, strong attention to detail, and effective collaboration are critical soft skills in this role. These competencies are essential for developing reproducible, scalable analysis pipelines that drive accurate biological insights in research or clinical settings.

What are some common challenges faced when developing and maintaining Nextflow pipelines in a bioinformatics team?

One common challenge in developing and maintaining Nextflow pipelines is ensuring reproducibility and compatibility across different computing environments, such as local clusters and cloud platforms. Collaborating with team members often involves integrating diverse tools and datasets, which can introduce version conflicts or software dependency issues. Additionally, keeping pipelines up-to-date with rapidly evolving bioinformatics methods requires strong communication and regular code reviews within the team. Effective documentation and modular pipeline design can help address these challenges and streamline collaborative workflows.

What is a Nextflow Bioinformatician?

A Nextflow Bioinformatician is a specialist who uses the Nextflow workflow management system to design, implement, and maintain computational pipelines for analyzing biological data. They typically work with large-scale sequencing datasets, automating processes such as data preprocessing, alignment, variant calling, and more. Their expertise lies in combining programming skills with bioinformatics knowledge to streamline and reproduce complex analyses, often in high-performance or cloud computing environments. This role is critical for ensuring reliable, scalable, and reproducible results in genomics and other life science research.
What cities in Indiana are hiring for Nextflow Bioinformatics jobs? Cities in Indiana with the most Nextflow Bioinformatics job openings:
Solution Architect - Research & Development Systems

Solution Architect - Research & Development Systems

Elanco Animal Health Incorporated

Indianapolis, IN • On-site

$60.25 - $79.25/hr

Full-time

Retirement

Posted 21 days ago


Elanco rating

7.8

Company rating: 7.8 out of 10

Based on 25 frontline employees who took The Breakroom Quiz

43rd of 73 rated pharmaceutical


Job description

At Elanco (NYSE: ELAN) - it all starts with animals!
As a global leader in animal health, we are dedicated to innovation and delivering products and services to prevent and treat disease in farm animals and pets. At Elanco, we are driven by our vision of Food and Companionship Enriching Life and our purpose - all to Go Beyond for Animals, Customers, Society and Our People.
At Elanco, we pride ourselves on fostering a diverse and inclusive work environment. We believe that diversity is the driving force behind innovation, creativity, and overall business success. Here, you'll be part of a company that values and champions new ways of thinking, work with dynamic individuals, and acquire new skills and experiences that will propel your career to new heights.
Making animals' lives better makes life better - join our team today!
Your Role: Solution Architect - Research & Development Systems
As a Solution Architect within Elanco IT, you will help lead the digital transformation of Elanco's global R&D organization. You will drive the adoption of modern pharmaceutical development platforms, including High-Performance Computing, AI/ML systems, Electronic Lab Notebooks, and Laboratory Execution Systems, to accelerate drug discovery and development in areas such as bioinformatics, computational chemistry, genomics, and systems biology.
In this role, you'll shape Elanco's scientific technology landscape by guiding architecture decisions, influencing technology investments, and aligning solutions with enterprise standards and research innovation goals.
Your Responsibilities:
  • Define and deliver the architecture vision for Elanco's R&D digital ecosystem, aligning with enterprise architecture principles and technology roadmaps.
  • Partner with Product Managers and Principal Engineers to design scalable, compliant, and secure scientific computing solutions.
  • Architect and implement integrated R&D systems (ELN, LIMS, LES, CDS, Informatics) using SaaS and cloud-native platforms.
  • Apply emerging technologies such as AI, cloud-native applications, and HPC to optimize research workflows, data pipelines, and predictive modeling.
  • Collaborate across IT and R&D to ensure systems support FAIR data principles and scientific reproducibility.

What You Need to Succeed (minimum qualifications):
  • Education: Bachelor's Degree in Information Systems, Computer Science, or related field.
  • Experience: Minimum 5 years architecting and delivering enterprise IT systems.
  • Key Skills:
    • Proven experience supporting pharmaceutical development systems (ELN, LIMS, CDS, LES, Informatics, HPC).
    • Strong technical expertise integrating SaaS and cloud-native solutions using modern architecture frameworks (API-first, service-oriented, event-driven).
    • Exceptional communication and leadership skills with the ability to translate complex technical concepts into business value.

What Will Give You a Competitive Edge (preferred qualifications):
  • Experience designing architectures for High-Performance Computing (HPC) environments and scientific workload management (e.g., SLURM, Nextflow).
  • Familiarity with FAIR data principles and scientific data lifecycle management.
  • Knowledge of regulatory and data integrity requirements in GxP environments (e.g., 21 CFR Part 11).
  • Hands-on experience with containerization (Docker, Kubernetes) and modern DevSecOps practices (CI/CD, TDD).
  • Solution architecture certifications in Microsoft Azure or Google Cloud Platform.

Additional Information:
  • Travel: Occasional
  • Location: Global Elanco Headquarters - Indianapolis, IN (Hybrid Work Environment)

Elanco Benefits and Perks:
We offer a comprehensive benefits package focusing on financial, physical, and mental well-being while encouraging our employees to pursue our purpose! Some highlights include:
  • Two weeklong shutdowns (mid-summer and year-end) in the US
  • 8-week parental leave
  • 9 Employee Resource Groups
  • Annual bonus offering and up to 6% 401(k) matching
  • Flexible work arrangements and multiple relocation packages

Elanco is an EEO/Affirmative Action Employer and does not discriminate on the basis of age, race, color, religion, gender, sexual orientation, gender identity, gender expression, national origin, protected veteran status, disability or any other legally protected status
Elanco may use automated tools, including AI, to support parts of our recruitment process, such as reviewing applications against job-related criteria and/or transferrable skills. These tools help ensure a consistent, structured evaluation, but they do not make hiring decisions. All decisions involve a human reviewer. For more information on how we handle personal data, please see our Elanco Workforce Privacy Notice.

What Elanco employees say

Pay

Benefits

Hours and flexibility

Workplace

Get the full story on Breakroom