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Nextflow Bioinformatics Jobs (NOW HIRING)

Vivo HealthStaff

Bioinformatics Scientist

Winter Park, FL · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required.Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Winter Park, FL · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Ann Arbor, MI · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required.Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required.Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Ann Arbor, MI · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required.Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Ann Arbor, MI · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Winter Park, FL · On-site

$150K - $180K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

Saviance

Senior Bioinformatics Software Engineer

The Senior Bioinformatics Software Engineer plays a critical technical role in the design ... Nextflow to support data-driven decision-making. • Work closely with stakeholders, such as ...

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

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Nextflow Bioinformatics information

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$59.5K

$94.5K

$149.5K

How much do nextflow bioinformatics jobs pay per year?

As of Sep 13, 2026, the average yearly pay for nextflow bioinformatics in the United States is $94,474.00, according to ZipRecruiter salary data. Most workers in this role earn between $67,500.00 and $129,500.00 per year, depending on experience, location, and employer.

What is a Nextflow bioinformatician?

A Nextflow Bioinformatician is a specialist who uses the Nextflow workflow management system to design, implement, and maintain computational pipelines for analyzing biological data. They typically work with large-scale sequencing datasets, automating processes such as data preprocessing, alignment, variant calling, and more. Their expertise lies in combining programming skills with bioinformatics knowledge to streamline and reproduce complex analyses, often in high-performance or cloud computing environments. This role is critical for ensuring reliable, scalable, and reproducible results in genomics and other life science research.

What skills and qualifications are needed to thrive as a Nextflow bioinformatics specialist?

To thrive as a Nextflow Bioinformatics specialist, you need a strong background in bioinformatics, scripting languages (such as Python or Bash), and experience with workflow management systems, often supported by a relevant degree in bioinformatics, biology, or computer science. Proficiency with Nextflow, containerization platforms (like Docker or Singularity), and high-performance computing environments is typically required. Problem-solving ability, strong attention to detail, and effective collaboration are critical soft skills in this role. These competencies are essential for developing reproducible, scalable analysis pipelines that drive accurate biological insights in research or clinical settings.

What are common challenges when developing and maintaining Nextflow pipelines in a bioinformatics team?

One common challenge in developing and maintaining Nextflow pipelines is ensuring reproducibility and compatibility across different computing environments, such as local clusters and cloud platforms. Collaborating with team members often involves integrating diverse tools and datasets, which can introduce version conflicts or software dependency issues. Additionally, keeping pipelines up-to-date with rapidly evolving bioinformatics methods requires strong communication and regular code reviews within the team. Effective documentation and modular pipeline design can help address these challenges and streamline collaborative workflows.

What is the difference between Nextflow Bioinformatics vs Bioinformatics Analyst?

AspectNextflow BioinformaticsBioinformatics Analyst
CredentialsTypically requires a degree in bioinformatics, computer science, or related fields; familiarity with scripting and workflow management toolsUsually holds a degree in bioinformatics, biology, or related disciplines; strong analytical and programming skills
Work EnvironmentResearch labs, biotech companies, or academic institutions; focuses on developing and executing computational workflowsData analysis in research or clinical settings; interprets biological data and reports findings
Industry UsageUsed in genomics, transcriptomics, and large-scale data processing projectsApplied in research, healthcare, and diagnostics to analyze biological datasets

While both roles require bioinformatics knowledge, Nextflow Bioinformatics specializes in managing and automating computational workflows using tools like Nextflow, whereas Bioinformatics Analysts focus on analyzing biological data and interpreting results. The roles often overlap but differ in technical focus and responsibilities.

More about Nextflow Bioinformatics jobs

What cities are hiring for Nextflow Bioinformatics jobs?

Cities with the most Nextflow Bioinformatics job openings:

What states have the most Nextflow Bioinformatics jobs?

States with the most job openings for Nextflow Bioinformatics jobs include:

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Nextflow Bioinformatics jobs near you
Infographic showing various Nextflow Bioinformatics job openings in the United States as of September 2026, with employment types broken down into 100% Full Time. Highlights an 100% In-person job distribution, with an average salary of $94,474 per year, or $45.4 per hour.

Bioinformatics Pipeline Test Engineer - Healthcare - San Diego CA - Local to CA or who can relocate

Dallas, TX • On-site

Vytwo
See more jobs at Vytwoexternal

Other

Posted 18 days ago

Job description

Title: Bioinformatics Pipeline Test Engineer Domain: Healthcare Location: San Diego, CA - Local to CA or who can relocate Duration: 6 Months Experience: 2+ years

Must have
  • Bioinformatics OR Genomics
  • NGS OR "Next Generation Sequencing"
  • VCF OR BAM OR FASTQ
  • Python
  • Testing OR QA OR "Quality Engineer" OR Validation
  • Git
Job Description Role Overview

We are seeking a Bioinformatics Test Engineer to validate and ensure the quality of NGS data pipelines and bioinformatics workflows. The role requires a strong blend of bioinformatics knowledge, QA expertise, and automation skills.

Key Responsibilities
  • Design and execute testing strategies for NGS pipelines (alignment, variant calling, annotation)
  • Perform data validation, regression testing, and discrepancy analysis
  • Develop automated test scripts (Python)
  • Translate requirements into test cases and validation criteria
  • Work with CI/CD pipelines and cloud-based workflows
  • Collaborate with cross-functional teams to ensure data accuracy and reliability
Required Skills
  • Strong understanding of NGS workflows (FASTQ, BAM, VCF)
  • Experience in bioinformatics pipeline testing or QA
  • Proficiency in Python scripting
  • Hands-on with Git and CI/CD tools
  • Experience with cloud platforms (AWS/GCP/Azure) and data pipelines
  • Strong problem-solving and communication skills
Preferred
  • Experience in the biotech/life sciences domain
  • Familiarity with Nextflow, Snakemake, or similar workflows
  • Exposure to regulated environments (CLIA/FDA)
What We’re Looking For
  • Strong testing mindset + hands‑on engineering skills
  • Ability to debug pipelines and explain thought process clearly
  • Experience with real‑world data workflows (not just academic projects)
  • Mentions NGS pipelines + testing together
  • Has Python + Git + CI/CD
  • Mentions variant calling / VCF validation
  • Worked on cloud or production pipelines
Reject or deprioritize if:
  • Only academic bioinformatics (no testing/QA)
  • Only statistics validation (no system testing)
  • No Python or automation
  • No infra experience (cloud / CI/CD / DB)
  • Only local scripts, no real pipelines
Other High Priority Keywords
  • Variant Calling
  • Pipeline Testing
  • Regression Testing
  • Test Strategy OR Test Case Design
  • Data Validation
  • Golden Dataset OR Reference Dataset
  • CI/CD OR "GitHub Actions" OR GitLab OR "Azure DevOps"
  • AWS OR S3 OR Cloud
  • Nextflow OR Snakemake OR WDL OR Cromwell
  • Automation Testing
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