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Nextflow Bioinformatics Jobs (NOW HIRING)

Active Motif

Bioinformatics Scientist

Carlsbad, CA

$95K - $125K/yr

Position Title: Bioinformatics Scientist Classification: Exempt Reports To: Manager of ... Experience with workflow and pipeline development using Nextflow or similar framework.

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Ann Arbor, MI

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

Vivo HealthStaff

Bioinformatics Scientist

Ann Arbor, MI · On-site

$170K - $190K/yr

Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:

MyOme

Bioinformatics Software Engineer

San Francisco, CA · On-site

$130K - $160K/yr

... Nextflow, Snakemake, WDL, CWL). * Proven experience optimizing and scaling bioinformatics pipelines for performance and reliability. * Proficient in Python, with bonus points for experience in other ...

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$59.5K

$94.5K

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How much do nextflow bioinformatics jobs pay per year?

As of May 30, 2026, the average yearly pay for nextflow bioinformatics in the United States is $94,474.00, according to ZipRecruiter salary data. Most workers in this role earn between $67,500.00 and $129,500.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a Nextflow Bioinformatics specialist, and why are they important?

To thrive as a Nextflow Bioinformatics specialist, you need a strong background in bioinformatics, scripting languages (such as Python or Bash), and experience with workflow management systems, often supported by a relevant degree in bioinformatics, biology, or computer science. Proficiency with Nextflow, containerization platforms (like Docker or Singularity), and high-performance computing environments is typically required. Problem-solving ability, strong attention to detail, and effective collaboration are critical soft skills in this role. These competencies are essential for developing reproducible, scalable analysis pipelines that drive accurate biological insights in research or clinical settings.

What are some common challenges faced when developing and maintaining Nextflow pipelines in a bioinformatics team?

One common challenge in developing and maintaining Nextflow pipelines is ensuring reproducibility and compatibility across different computing environments, such as local clusters and cloud platforms. Collaborating with team members often involves integrating diverse tools and datasets, which can introduce version conflicts or software dependency issues. Additionally, keeping pipelines up-to-date with rapidly evolving bioinformatics methods requires strong communication and regular code reviews within the team. Effective documentation and modular pipeline design can help address these challenges and streamline collaborative workflows.

What is a Nextflow Bioinformatician?

A Nextflow Bioinformatician is a specialist who uses the Nextflow workflow management system to design, implement, and maintain computational pipelines for analyzing biological data. They typically work with large-scale sequencing datasets, automating processes such as data preprocessing, alignment, variant calling, and more. Their expertise lies in combining programming skills with bioinformatics knowledge to streamline and reproduce complex analyses, often in high-performance or cloud computing environments. This role is critical for ensuring reliable, scalable, and reproducible results in genomics and other life science research.

What is the difference between Nextflow Bioinformatics vs Bioinformatics Analyst?

AspectNextflow BioinformaticsBioinformatics Analyst
CredentialsTypically requires a degree in bioinformatics, computer science, or related fields; familiarity with scripting and workflow management toolsUsually holds a degree in bioinformatics, biology, or related disciplines; strong analytical and programming skills
Work EnvironmentResearch labs, biotech companies, or academic institutions; focuses on developing and executing computational workflowsData analysis in research or clinical settings; interprets biological data and reports findings
Industry UsageUsed in genomics, transcriptomics, and large-scale data processing projectsApplied in research, healthcare, and diagnostics to analyze biological datasets

While both roles require bioinformatics knowledge, Nextflow Bioinformatics specializes in managing and automating computational workflows using tools like Nextflow, whereas Bioinformatics Analysts focus on analyzing biological data and interpreting results. The roles often overlap but differ in technical focus and responsibilities.

More about Nextflow Bioinformatics jobs
What cities are hiring for Nextflow Bioinformatics jobs? Cities with the most Nextflow Bioinformatics job openings:
What states have the most Nextflow Bioinformatics jobs? States with the most job openings for Nextflow Bioinformatics jobs include:
What job categories do people searching Nextflow Bioinformatics jobs look for? The top searched job categories for Nextflow Bioinformatics jobs are:
Nextflow Bioinformatics jobs near you
Infographic showing various Nextflow Bioinformatics job openings in the United States as of May 2026, with employment types broken down into 5% Internship, 26% Full Time, 53% Part Time, 5% Temporary, and 11% Contract. Highlights an 22% Physical, 10% Hybrid, and 68% Remote job distribution, with an average salary of $94,474 per year, or $45.4 per hour.
Bioinformatics Scientist

Bioinformatics Scientist

Active Motif

Carlsbad, CA

$95K - $125K/yr

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 16 days ago

Job description

Position Title: Bioinformatics Scientist

Classification: Exempt

Reports To: Manager of Bioinformatics

About Active Motif

Active Motif is a global leader in developing and delivering innovative tools and services for epigenetics and gene regulation research. We are committed to providing high-quality products, cutting-edge technologies, and exceptional scientific support to the life science, clinical, and pharmaceutical research communities. Our comprehensive portfolio of epigenetics assays, sequencing services, and analytical solutions empowers researchers to investigate chromatin biology, gene regulation, and disease mechanisms with confidence.

Position Summary

The Bioinformatician is responsible for analyzing and interpreting large-scale genomics and epigenomics datasets generated from next-generation sequencing (NGS) experiments. This role involves developing and maintaining analytical pipelines, applying advanced statistical and computational methods, and collaborating with internal scientists and external customers to deliver high-quality biological insights.

The ideal candidate will have strong expertise in epigenetics and transcriptomics data analysis, experience with high-throughput sequencing technologies, and proficiency in bioinformatics software development and workflow automation. This position requires both independent problem-solving skills and effective collaboration within multidisciplinary teams.

Key Responsibilities

  • Analyze and interpret large-scale genomics and epigenomics datasets using advanced computational methods e.g., ML/DL, statistical model.
  • Perform standardized and custom bioinformatics analyses for external customers and internal research teams.
  • Develop, optimize, and maintain bioinformatics pipelines and analytical workflows for NGS assays.
  • Support assay development and novel analytical method implementation for transcriptomic and epigenetic datasets.
  • Collaborate with cross-functional teams to design experiments, interpret results, and provide analytical recommendations.
  • Communicate findings through reports, presentations, and customer interactions
  • Maintain and improve pipelines for assays including ChIP-seq, CUT&RUN/CUT&Tag, ATAC-seq, RNA-seq, Hi-C, DNA methylation, and single-cell sequencing technologies
  • Stay current with emerging bioinformatics methods, software, and best practices

Qualifications

Required

  • MS or PhD in Bioinformatics, Computational Biology, Genomics, Computer Science, Statistics, or related field.
  • Minimum 2 years of post-graduate academic or industry experience in bioinformatics or computational biology.
  • Strong knowledge of epigenetics, gene regulation, and next-generation sequencing technologies.
  • Experience analyzing large-scale genomics, transcriptomics, or epigenomics datasets.
  • Proficiency in R and/or Python, Linux/bash scripting, and Git version control.
  • Strong statistical, analytical, and data visualization skills.
  • Excellent written and verbal communication skills with ability to collaborate across multidisciplinary teams.

Preferred

  • Experience with workflow and pipeline development using Nextflow or similar framework.
  • Familiarity with Docker, Conda, cloud, or HPC environments.
  • Experience with machine learning, statistical modeling, or multi-omics data integration.
  • Experience with single-cell sequencing data analysis.
  • Ability to communicate complex analytical findings to both technical and non-technical audiences.

What Active Motif can offer?

  • Health Insurance: Medical, Dental, and Vision (offering no-cost employee premium plans; and 50% subsidized premiums for dependents)
  • Life Insurance, Short- and Long-term Disability Insurance Employer-Paid
  • 401(k) after ninety (90) days of employment
  • Paid Time Off (PTO): 120 hours on an annual incremental schedule
  • Ten (10) paid Major Holidays, and year-end paid Holiday time off
  • Free Electric Vehicle Charging Station
  • Salary Range: $95,000 - $125,000 Annually

*The salary of the final candidate selected for this role will be set based on a variety of factors, including but not limited to, experience, education, specialization, skills, abilities, and training. The salary range represents Active Motif's good faith and reasonable estimate of the possible compensation at the time of the posting. Certain positions may be eligible for additional compensation such as commission, bonus, and stock options. All benefits are subject to eligibility requirements.

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