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Bioinformatics Software Engineer Jobs in Washington

BCC-NIH

Software Developer (C++, Python)

Bethesda, MD · On-site

Overview Black Canyon Consulting (BCC) is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and ...

BCC-NIH

Software Developer (C++, Python)

Bethesda, MD · On-site +1

Overview Black Canyon Consulting (BCC) is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and ...

Axle

Bioinformatics Engineer

Rockville, MD

With experts in biomedical science, software engineering, and program management, we focus on ... Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of ...

Axle

Bioinformatics Engineer

Rockville, MD · On-site

With experts in biomedical science, software engineering, and program management, we focus on ... Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of ...

Axle

Bioinformatics Engineer

Rockville, MD

With experts in biomedical science, software engineering, and program management, we focus on ... Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of ...

BCC-NIH

Program Principal Engineer

Bethesda, MD · Hybrid

... NCBI bioinformatics software and information retrieval systems * Work with a diverse group of ... Programming experience in a Linux environment * Proficiency in C++ * Experience with MS SQL server ...

BCC-NIH

Program Principal Engineer

Bethesda, MD · On-site

... NCBI bioinformatics software and information retrieval systems * Work with a diverse group of ... Programming experience in a Linux environment * Proficiency in C++ * Experience with MS SQL server ...

Axle

Bioinformatics Engineer

Rockville, MD · On-site

They are seeking a Bioinformatics Engineer to join their team supporting major pharmaceutical ... software engineers to integrate pipelines into broader analytical ecosystems • Stay current with ...

Axle

Bioinformatics Scientist

Bethesda, MD · On-site

With experts in biomedical science, software engineering, and program management, we focus on ... Address bioinformatics, scientific computing, and data analysis needs of users within the Division ...

Axle

Bioinformatics Scientist

Bethesda, MD

With experts in biomedical science, software engineering, and program management, we focus on ... Address bioinformatics, scientific computing, and data analysis needs of users within the Division ...

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All JobsBioinformatics Software Engineer JobsBioinformatics Software Engineer Jobs in Washington

Bioinformatics Software Engineer information

See Washington salary details

$48.7K

$148.4K

$270.1K

How much do bioinformatics software engineer jobs pay per year?

As of Jul 10, 2026, the average yearly pay for bioinformatics software engineer in Washington is $148,430.00, according to ZipRecruiter salary data. Most workers in this role earn between $108,700.00 and $177,800.00 per year, depending on experience, location, and employer.

What is a Bioinformatics Software Engineer job?

A Bioinformatics Software Engineer develops and maintains software tools, algorithms, and databases for analyzing biological data, such as genomic sequences and protein structures. They work at the intersection of computer science and biology, using programming languages like Python, Java, or R to process and interpret large-scale biological datasets. Their role is crucial in fields like genomics, drug discovery, and personalized medicine, where computational solutions help researchers derive meaningful insights from complex biological information.

What are the typical daily responsibilities of a Bioinformatics Software Engineer?

As a Bioinformatics Software Engineer, your day-to-day responsibilities typically include designing, developing, and maintaining software tools or pipelines for analyzing biological data such as DNA, RNA, or protein sequences. You may collaborate closely with researchers and scientists to understand biological problems and translate them into computational solutions, reviewing and optimizing code for efficiency and scalability. Troubleshooting data processing issues, integrating new algorithms, and contributing to documentation are also common tasks. Additionally, you might participate in cross-functional meetings and keep up with emerging technologies and trends in the field.

What are the key skills and qualifications needed to thrive in the Bioinformatics Software Engineer position, and why are they important?

To thrive as a Bioinformatics Software Engineer, you need a strong background in software development (especially with Python, R, or C++), algorithm design, and biological data analysis, usually supported by a degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools, databases (like NCBI or Ensembl), version control systems (such as Git), and experience with cloud computing or high-performance computing environments is highly valued. Strong problem-solving skills, attention to detail, and the ability to collaborate effectively with biologists and data scientists set candidates apart. These competencies are crucial for efficiently developing reliable software solutions that support complex biological research and data-driven discoveries.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in Washington? The most popular types of Bioinformatics Software Engineer jobs in Washington are:
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Bioinformatics Software Engineer jobs near you
Bioinformatics Systems Integration Lead Engineer

Bioinformatics Systems Integration Lead Engineer

GeneDx, Inc

Gaithersburg, MD • On-site

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Re-posted 6 days ago

GeneDx rating

9.3

Company rating: 9.3 out of 10

Based on 5 frontline employees who took The Breakroom Quiz

3rd of 103 rated laboratories

Job description

Company Description

GeneDx is a rapidly growing CAP and CLIA certified diagnostic genetic testing laboratory for molecular genetics. Our historic mission has been to make clinical diagnostic testing available for people with genetic conditions and their families. We apply cutting edge technologies that provide a wide array of molecular genetic diagnostic tests, including whole exome sequencing and next generation sequencing panels. To learn more about GeneDx, please visit our website at www.genedx.com.

Job Description

GeneDx is seeking a Lead Engineer - Bioinformatics Systems Integration (FT, 40 hours) to work at our Gaithersburg, MD location, Monday through Friday, 8:30 a.m. to 5:00 p.m.

Role: The Lead Engineer - Bioinformatics Systems Integration will be responsible for the deployment, integration, and support of bioinformatics applications for genomic testing operations across GenPath and GeneDx. This position will also be responsible for optimization and modernization of existing systems and processes. He or she will additionally serve as the liaison between the GenPath genomics production laboratory and the assay development team at GeneDx.

Essential Duties:

  • Works closely with the assay development, clinical, wet lab, and IT teams to bring new assays into production
  • Gathers requirements, designs high-level workflows, anticipates business needs, and estimates timelines for GenPath bioinformatics projects
  • Creates and improves existing testing and deployment frameworks for bioinformatics software development
  • Optimizes existing systems (pipelines, databased, etc.) to improve scalability and maintainability
  • Contributes to the development of software for new assay implementation
  • Establishes and implements policies for bioinformatics software validations and releases and other related activities
  • Mentors jurior developers in best coding practices and general career development
  • Supervises GenPath laboratory informatics software engineers supporting and transitioning from legacy systems (Filemaker, MS Access)
  • Supports LIS system development and integration at GenPath; LIS development is performed by a third party
  • Travels up to 10-20% (maximum 2 days every other week) to GenPath at BioReference Laboratories in Elmwood Park, NJ
Qualifications

Qualifications:

  • BS or MS in Bioinformatics, Computer Science, or a related field
  • 10+ years professional software development experience
  • 5+ years leadership experience
  • 5+ years experience in genomics/bioinformatics software development
  • Proficiency in at least one major scripting language (Perl, Python)
  • Proficiency in relational database engineering (Postgres, MySQL, etc.)
  • Proficiency in Linux shell
  • Proficiency with Git version control or another modern version control system
  • Experience with HPC or cloud computing (Slurm, AWS, SGE, etc.)
  • Broad knowledge of modern genomic assay technologies and data (NGS, aCGH, etc.)
Additional Information

All your information will be kept confidential according to EEO guidelines.

Benefits include:

  • Paid Time Off (vacation, sick, personal, holiday, jury duty, bereavement leave)
  • Health, dental, vision, life insurance, LT/ST disability plans
  • Flexible Spending Account (FSA)
  • Health Savings Account (HSA)
  • 401K retirement savings plan with a 4% company match and immediate vesting
  • Tuition Assistance
  • Employee Discounts (cell phone service, movie tickets, etc.)
  • Regular performance appraisals
  • Many promotions from within

Business casual, dog-friendly work environment

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