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Internship Bioinformatics Software Engineer Jobs in Boulder, CO

A note before you apply We're hiring Software Engineering Interns! This is a full-time (40+ hours a week) salaried 12 month internship where you'll work closely with our Engineering, Product, and ...

As a Software Engineer Intern, you'll have an opportunity to grow more quickly than you ever ... This should be your final internship before graduating. To apply, please submit the following: * An ...

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As a Software Engineer Intern, you'll have an opportunity to grow more quickly than you ever ... This should be your final internship before graduating. To apply, please submit the following: * An ...

As a Software Engineer Intern, you'll have an opportunity to grow more quickly than you ever ... This should be your final internship before graduating. To apply, please submit the following: * An ...

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

We sit at the intersection of molecular biology, bioinformatics, and next-generation sequencing ... Identify, document, and track software defects; collaborate with engineering teams to troubleshoot ...

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Internship Bioinformatics Software Engineer information

See Boulder, CO salary details

$13

$26

$40

How much do internship bioinformatics software engineer jobs pay per hour?

As of Sep 3, 2026, the average hourly pay for internship bioinformatics software engineer in Boulder, CO is $26.36, according to ZipRecruiter salary data. Most workers in this role earn between $21.44 and $29.90 per hour, depending on experience, location, and employer.

What does an internship bioinformatics software engineer do?

An Internship Bioinformatics Software Engineer assists in developing and maintaining software tools used to analyze biological data, such as DNA sequences or protein structures. They often work under the supervision of senior engineers and scientists to write code, troubleshoot issues, and implement algorithms for biological research. Interns may also help process large datasets, visualize results, and collaborate with interdisciplinary teams. This role provides hands-on experience in both software development and the application of computational methods to biological problems.

What are the key skills and qualifications needed to thrive as an internship bioinformatics software engineer?

To thrive as an Internship Bioinformatics Software Engineer, you need a foundational understanding of programming (often in Python, R, or Java), basic knowledge of molecular biology or genomics, and current pursuit of a degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools (such as BLAST, Bioconductor, or Galaxy), version control systems like Git, and experience analyzing biological datasets are typically expected. Strong problem-solving abilities, attention to detail, and effective communication skills help interns collaborate and learn in multidisciplinary teams. These skills and qualities ensure interns can contribute to meaningful research, adapt quickly to new technologies, and facilitate teamwork in complex scientific environments.

What types of projects do internship bioinformatics software engineers typically work on?

Internship Bioinformatics Software Engineers often work on projects involving the development and optimization of software tools for analyzing large biological datasets, such as genomic sequences or protein structures. These projects frequently require collaboration with biologists and data scientists, offering valuable exposure to interdisciplinary teamwork. Interns may be tasked with writing code, testing algorithms, or visualizing data, all of which build practical skills in both software engineering and bioinformatics. This hands-on experience not only enhances technical proficiency but also helps interns better understand real-world applications in life sciences, setting a strong foundation for future career growth.

What is the difference between Internship Bioinformatics Software Engineer vs Bioinformatics Data Analyst?

AspectInternship Bioinformatics Software Engineer
Required CredentialsEnrolled in or recent graduate of Computer Science, Bioinformatics, or related fields
Work EnvironmentResearch labs, biotech companies, or academic institutions
Employer & Industry UsageUsed in biotech, pharmaceutical, and research organizations for software development
Common Search & ComparisonCompared for entry-level software development roles in bioinformatics

While both roles involve working with biological data, an Internship Bioinformatics Software Engineer focuses on developing software tools and algorithms, often requiring programming skills and software development knowledge. A Bioinformatics Data Analyst primarily analyzes biological data, using statistical and data visualization tools. The internship provides hands-on experience in coding and software creation, whereas a data analyst role emphasizes data interpretation and reporting.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in Boulder, CO?

The most popular types of Bioinformatics Software Engineer jobs in Boulder, CO are:

What are popular job titles related to Internship Bioinformatics Software Engineer jobs in Boulder, CO?

For Internship Bioinformatics Software Engineer jobs in Boulder, CO, the most frequently searched job titles are:

Infographic showing various Internship Bioinformatics Software Engineer job openings in Boulder, CO as of August 2026, with employment types broken down into 87% Full Time, 9% Part Time, and 4% Contract. Highlights an 89% Physical, 3% Hybrid, and 8% Remote job distribution, with an average salary of $54,828 per year, or $26.4 per hour.

Software Engineer Internship

Clerkie

Denver, CO โ€ข On-site, Remote

$80/hr

Full-time, Internship

Medical, Dental, Vision, Retirement, PTO

Posted 6 days ago


Key responsibilities

  • Develop and maintain Clerkie Fiber, the company's B2B CRM, in collaboration with engineering, product, and design teams

  • Work across the full tech stack, including frontend interfaces and backend services, to build and optimize APIs and user experiences

  • Write clean, scalable, and secure code while contributing to system architecture decisions


Job description

A note before you apply

We're hiring Software Engineering Interns! This is a full-time (40+ hours a week) salaried 12 month internship where you'll work closely with our Engineering, Product, and Design teams to build real features, solve real problems, and contribute to products that make a difference. 

This listing represents multiple openings and for standout interns our goal is to convert this into a full-time engineering role at the end of the program.

About Clerkie

Clerkie is a fintech startup on a mission to democratize financial wellness using the power of artificial intelligence. Launched in 2018, Clerkie began with an app, aiming to help the nearly 123 million underserved Americans in need of financial guidance. Since its inception, the company has expanded its services and now pairs consumer guidance with cutting-edge B2B software. By pairing the two through the Clerkie network, these tools have become the go-to resource for creditors looking to manage loan losses while simultaneously helping millions of borrowers get out of debt.

Clerkie is a remote-first company, with over 40 employees spanning 4 time zones across the United States. To date, the company has raised $41 million, including a $33 million Series A round in early 2023. Investors include leading financial and venture institutions, including Citi Ventures, Left Lane Capital, Wellington Ventures, Flourish Ventures, and Vestigo Ventures.

About the internship

As the newest addition to Team Clerkie, this Software Engineer Intern will work across our Engineering function to contribute to Clerkie Fiber, our B2B CRM, designed to transform the debt industry.

This full-time 12 month paid internship is designed for soon-to-be or recent graduates who are excited to kickstart their career in software engineering. You'll work across the full stack, collaborating with engineers on frontend, backend, and infrastructure projects. Whether you're optimizing APIs, refining user interfaces, or contributing to our architecture, your work will have a direct impact.

This isn't just another internship - it's an investment in your growth. The ideal Clerkie team member is curious, collaborative, and eager to grow in a fast-paced environment. Clerkie's culture values a customer-first mindset and a bias for action - we're looking for someone who's excited to dive in and learn.

While this opportunity is remote-first, Clerkie offers the option to visit or work from our SF HQ at any time.

Here's what you will do
  • Develop and maintain Clerkie Fiber, our flagship B2B CRM, collaborating closely with backend, frontend, product, and design teams
  • Work across the full tech stack, from frontend interfaces (Next.js, Tailwind CSS) to backend services (Node.js, AWS, MongoDB)
  • Build robust and scalable APIs to support our platform's growing user base
  • Optimize performance and ensure a seamless, user-friendly experience
  • Write clean, well-structured, and maintainable code with a strong emphasis on scalability and security
  • Contribute to system architecture decisions, helping shape the future of Clerkie's technology
Minimum qualifications
  • A soon-to-be or recent graduate (class of 2024 or 2025 preferred) with a degree in Computer Science, Software Engineering, or a related field
  • Proficiency in JavaScript/TypeScript and experience with React.js, Next.js, or Node.js
  • Comfortable working with databases (SQL or NoSQL, e.g., PostgreSQL, MongoDB)
  • Ability to manage project priorities, meet deadlines, and deliver results independently
  • Excitement for being part of a small, fast-moving team where every day brings new challenges and opportunities to learn and grow
Preferred qualifications (ranked by priority and not required):
  • Personal or school projects involving full-stack development
  • Exposure to AWS, Docker, or CI/CD pipelines
  • Experience with testing frameworks (Jest, Mocha)
  • Interest in fintech or financial literacy
Other adds
  • Passion for our mission
  • Experience building and scaling products
  • Proactive team player who can work with others towards a common goal
  • Extreme focus on the user with a healthy obsession for solving their needs
  • Committed to being a part of something bigger than yourself
Our salary range
  • ???? Salary range: $80 - 100k 
  • ???? Remote-first role (US only)
  • ???? Medical, dental, and vision insurance
  • ???? 401(k) + retirement benefits
  • ???? Paid time off + annual company retreat
  • ???? Company laptop + home office stipend
  • ???? Collaborative, values-driven culture
Our Process

Our hiring process is intentionally designed for you to interview Clerkie as much as our team is interviewing you. We've built a 5-step process that allows for a two-way assessment across skills, behaviors, values, technical ability, ways of working, and adaptability in a lean startup environment. 

  • Application & Coderbyte (async candidate time) 
  • Intro Screen w/ People team (20-30 minutes via Google meet)
  • Take-Home Challenge & Live Review w/ Sr. Engineer (challenge is async candidate time, live review is 45 mins via Google meet) 
  • Live Coding Challenge w/ another Sr. Engineer (90 minutes via Google meet) 
  • Final Management Meeting w/ SLT (45 minutes via Google meet)
Before we extend any offers, all candidates must successfully complete a standard background check in addition to a reference check. These checks are conducted in tandem to ensure a safe, secure, and compliant environment for all Clerkie team members and stakeholders. 
AI & Interview Assessments

At Clerkie, we embrace AI and use it throughout our day-to-day work. We value people who thoughtfully leverage modern tools to learn, build, and solve problems more effectively.

Our interview process is designed to evaluate each candidate's own technical thinking, communication, and problem-solving approach. To help ensure every candidate is assessed fairly, consistently, and under the same conditions, we ask candidates not to use external problem-solving resources during live interviews or technical assessments unless we explicitly state otherwise. This includes AI assistants, interview assistants, search engines, and other third-party resources. You're welcome to reference any documentation or materials that we provide as part of the interview.

This expectation does not apply to approved interview accommodations or assistive technologies. If you require a reasonable accommodation at any stage of our hiring process, please let us know. We're committed to providing an accessible and equitable interview experience for all candidates.

If this interview expectation is not followed, we may conclude the assessment and discontinue the interview process.


Clerkie logo

About Clerkie

Sourced by ZipRecruiter

Industry

Software development

Company size

11 - 50 Employees

Headquarters location

San Francisco, CA, US

Year founded

2017