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Assistant Financial Controller Jobs (NOW HIRING)

System One

Financial Controller

Houston, TX · On-site

$120K - $150K/yr

Financial Controller Location: Houston, TX Type: Direct Hire Compensation: $120,000.00 - $150,000 ... Prior Controller, Assistant Controller, Accounting Manager, or equivalent leadership experience

System One

Financial Controller

Houston, TX · On-site

$120K - $150K/yr

Financial Controller Location: Houston, TX Type: Direct Hire Compensation: $120,000.00 - $150,000 ... Prior Controller, Assistant Controller, Accounting Manager, or equivalent leadership experience

Graco, Inc.

Financial Controller

Kamas, UT · On-site

Additionally, the business unit controller may assist in financial and operating due diligence for acquisition targets, as well as assist in acquisition integration. The role assists in ...

System One

Financial Controller

Houston, TX · On-site

$120K - $150K/yr

Financial Controller Location: Houston, TX Type: Direct Hire Compensation: $120,000.00 - $150,000 ... Prior Controller, Assistant Controller, Accounting Manager, or equivalent leadership experience

System One

Financial Controller

Houston, TX · On-site

$120K - $150K/yr

Financial Controller Location: Houston, TX Type: Direct Hire Compensation: $120,000.00 - $150,000 ... Prior Controller, Assistant Controller, Accounting Manager, or equivalent leadership experience

System One

Financial Controller

Houston, TX · On-site

$120K - $150K/yr

Financial Controller Location: Houston, TX Type: Direct Hire Compensation: $120,000.00 - $150,000 ... Prior Controller, Assistant Controller, Accounting Manager, or equivalent leadership experience

System One

Financial Controller

Houston, TX · On-site

$120K - $150K/yr

Financial Controller Location: Houston, TX Type: Direct Hire Compensation: $120,000.00 - $150,000 ... Prior Controller, Assistant Controller, Accounting Manager, or equivalent leadership experience

System One Holdings, LLC

Financial Controller

Houston, TX · On-site

$120K - $150K/yr

Financial Controller Location: Houston, TX Type: Direct Hire Compensation: $120,000.00 - $150,000 ... Prior Controller, Assistant Controller, Accounting Manager, or equivalent leadership experience

System One

Financial Controller

Houston, TX · On-site

$120K - $150K/yr

Financial Controller Location: Houston, TX Type: Direct Hire Compensation: $120,000.00 - $150,000 ... Prior Controller, Assistant Controller, Accounting Manager, or equivalent leadership experience

Insight Recruitment

Financial Controller

Seward, NE · On-site

$130K - $170K/yr

... Manager, Assistant Controller, or another manufacturing accounting role with comparable ... The finance structure is expected to expand alongside both the manufacturing operation and the ...

System One

Financial Controller

Houston, TX · On-site

$120K - $150K/yr

Financial Controller Location: Houston, TX Type: Direct Hire Compensation: $120,000.00 - $150,000 ... Prior Controller, Assistant Controller, Accounting Manager, or equivalent leadership experience

System One

Financial Controller

Houston, TX · On-site

$120K - $150K/yr

Financial Controller Location: Houston, TX Type: Direct Hire Compensation: $120,000.00 - $150,000 ... Prior Controller, Assistant Controller, Accounting Manager, or equivalent leadership experience

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Assistant Financial Controller information

See salary details

$42K

$102.4K

$150K

How much do assistant financial controller jobs pay per year?

As of Sep 13, 2026, the average yearly pay for assistant financial controller in the United States is $102,439.00, according to ZipRecruiter salary data. Most workers in this role earn between $83,500.00 and $119,000.00 per year, depending on experience, location, and employer.

What does an assistant financial controller do?

An Assistant Financial Controller supports the Financial Controller in managing an organization’s accounting operations. Their responsibilities typically include preparing financial statements, assisting with budgeting and forecasting, ensuring compliance with accounting standards, and supervising accounting staff. They also help analyze financial data, implement internal controls, and may be involved in audits. This role acts as a bridge between the finance team and upper management, ensuring accurate financial reporting and contributing to strategic decision-making.

What are the key skills and qualifications needed to thrive as an assistant financial controller?

To thrive as an Assistant Financial Controller, you need strong analytical skills, a solid understanding of accounting principles, and a degree in finance or accounting, often complemented by a CPA or similar certification. Expertise in financial management software such as SAP, Oracle, or QuickBooks, and advanced Excel skills are typically required. Attention to detail, problem-solving abilities, and effective communication make candidates stand out in this role. These skills ensure accurate financial reporting, effective team collaboration, and compliance with regulatory standards, all crucial for organizational financial health.

What are some common challenges faced by assistant financial controllers, and how can they be effectively managed?

Assistant Financial Controllers frequently encounter challenges such as managing tight reporting deadlines, ensuring compliance with evolving financial regulations, and coordinating across multiple departments. Effective time management, strong organizational skills, and proactive communication with both finance and non-finance teams are essential in overcoming these hurdles. Leveraging financial software and staying updated on industry best practices can also help streamline processes and reduce errors, leading to a more efficient workflow.

What is the difference between Assistant Financial Controller vs Financial Analyst?

AspectAssistant Financial ControllerFinancial Analyst
Required CredentialsBachelor's degree in Finance or Accounting; CPA or CMA preferredBachelor's degree in Finance, Accounting, or Economics; certifications like CFA are common
Work EnvironmentFinance departments, accounting teams, corporate officesInvestment firms, corporate finance, consulting firms
Employer & Industry UsageUsed in corporate finance, accounting, and auditing firmsUsed across finance sectors including banking, investment, and corporate

The Assistant Financial Controller primarily supports accounting and financial reporting within a company, focusing on compliance and internal controls. In contrast, a Financial Analyst analyzes financial data to guide investment and business decisions. Both roles require strong financial knowledge and certifications, but their daily tasks and focus areas differ significantly.

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What are the most commonly searched types of Financial Controller jobs?

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Assistant Financial Controller jobs near you
Infographic showing various Assistant Financial Controller job openings in the United States as of September 2026, with employment types broken down into 1% As Needed, 84% Full Time, 13% Part Time, and 2% Contract. Highlights an 86% Physical, 3% Hybrid, and 11% Remote job distribution, with an average salary of $102,439 per year, or $49.2 per hour.

Financial Controller

South San Francisco, CA • On-site

Atlas Data Storage, Inc.
See more jobs at Atlas Data Storage, Inc.external

$230K - $260K/yr

Full-time

Medical, Dental, Vision, Retirement, PTO

Re-posted 28 days ago

Key responsibilities

  • Oversee all day-to-day accounting operations, including general ledger, AP/AR, payroll, and month-end close

  • Ensure accurate and timely financial statements in compliance with GAAP, including technical matters such as revenue recognition, lease accounting, R&D expenditures and capitalization, and stock-based compensation

  • Develop and implement internal controls, accounting policies, and scalable processes

Job description

About AtlasBase
AtlasBase is a fast-growing pioneer in Molecular Computing, bridging the gap between traditional IT and biotechnology. We are redefining global IT infrastructure by driving breakthroughs in both Molecular Compute and Molecular Data Storage. By commercializing synthetic DNA-based technologies at IT scale, AtlasBase delivers ultra-high-density, low-maintenance, and carbon-conscious solutions built for the explosive growth and value of the world's data. Leveraging nature's most durable medium, we provide a virtually permanent foundation that transforms how the world processes and secures its most critical information.
Originally spun out of Twist Bioscience, our team is an elite fusion of scientists, engineers, and operators dedicated to solving some of the most complex infrastructure challenges on Earth. While our work is grounded in deep science, our success depends on world-class talent across every discipline. We are seeking a Financial Controller who is ready to bring their expertise to a high-impact environment and help us build a brand-new category of technology.
The Role:
We are seeking a Financial Controller to lead the accounting function, with the vision and experience to build a strong financial foundation for rapid growth and provide strategic insight as we build a brand-new category of technology. Reporting to the Chief Financial Officer, the Financial Controller will lead all aspects of accounting, financial operations, reporting, and internal financial systems and controls, while ensuring the rigor, scalability, and financial discipline needed to support rapid growth. You will be responsible for building scalable systems, strengthening internal controls, and ensuring financial accuracy and compliance. As the Company's accounting leader, you will partner closely with our accomplished Executive Team and divisional leadership to support strategic decisions and operational growth.
Responsibilities:
  • Oversee all day-to-day accounting operations, including general ledger, AP/AR, payroll, and month-end close
  • Ensure accurate and timely financial statements in compliance with GAAP, including technical matters such as revenue recognition, lease accounting, R&D expenditures and capitalization, and stock-based compensation
  • Develop and implement internal controls, accounting policies, and scalable processes
  • Manage cash flow forecasting, budgeting, and financial planning in collaboration with executive leadership
  • Lead annual audit and tax preparation with external auditors and advisors.
  • Implement and manage accounting systems, tools, and infrastructure suitable for a growing startup
  • Support contract review, financial modeling, and cost analysis to inform business decisions
  • Partner cross-functionally with Operations, R&D, and Sales/Business Development to track project costs and financial performance
  • Prepare board-level financial reporting packages and support investor communications, as needed
  • Communicate Company performance and trends through effective use of dashboards and KPIs to support executive decision making

Qualifications:
  • 8+ years of progressive accounting and finance experience, including experience in a Controller, Assistant Controller, or Senior Accounting Manager role
  • Strong knowledge of U.S. GAAP and experience managing audits
  • Prior experience in a high-growth startup in technology, biotech, or hardware/manufacturing environment
  • Proven ability to design and implement accounting processes and systems
  • Demonstrated ability to manage budgets, cash flow, and forward-looking financial modeling
  • Exceptional attention to detail, analytical skills, and financial acumen
  • Proficiency with accounting software (e.g., NetSuite or similar) and Excel/Google Sheets
  • Ability to 'see around corners' to plan for what's next and provide leadership in building the accounting & finance function
  • Ability to operate both strategically and hands-on in a fast-paced environment.

Preferred Qualifications:
  • CPA certification (required)
  • Big 4 or related audit experience (required)
  • Experience with cost accounting, sales accounting, inventory management, or manufacturing accounting (required)
  • Experience leading Single Audits and supporting federal grant compliance or government contracting a plus
  • Familiarity with SaaS or hybrid revenue models.

Additional:
  • In-office or hybrid; relocation considered
  • Authorization to work in the U.S is a precondition to employment. AtlasBase is unable to provide H1B visa sponsorship for this position at this time.

Competitive Benefits Package
  • Generous PTO Policy
  • 12 Paid Holidays
  • 401k Program with Match
  • Lunch and snacks in office
  • Robust health, dental, vision insurance, and more

Why AtlasBase?
AtlasBase is a pioneer in Molecular Computing, bridging the gap between traditional IT and biotechnology. We are redefining global IT infrastructure by driving breakthroughs in both Molecular Processing and Molecular Data Storage. By commercializing synthetic DNA-based technologies at IT scale, AtlasBase delivers ultra-high-density, low-maintenance, carbon-conscious solutions built for the explosive growth and value of the world's data. Leveraging nature's most durable medium, we provide a virtually permanent foundation that transforms how the world processes and secures its most critical information. We've raised over $150M from ARCH Ventures (early investor in Illumina, Juno Therapeutics, Alnylam Pharmaceuticals, GRAIL, Array BioPharma et al), Deerfield Management (early investor in Nuvalent, Melinta Therapeutics et al) and other top-tier investors. Based in South San Francisco, and our team comes from world class organizations like Twist Bioscience, Net App, Illumina, and other highly successful companies. Join us in building the future of Molecular Computing!
The pay range for this role is:
230,000 - 260,000 USD per year (HQ)

Apply