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Microbial Fermentation Jobs (NOW HIRING)

Manus Bio

Fermentation Engineer II

Augusta, GA · On-site

The Fermentation Engineer is responsible for the design, development, optimization, and scale-up of microbial fermentation processes to produce bio-alternatives, applying fundamental microbial ...

Manus Bio

Fermentation Engineer II

Augusta, GA

The Fermentation Engineer is responsible for the design, development, optimization, and scale-up of microbial fermentation processes to produce bio-alternatives, applying fundamental microbial ...

Manus

Fermentation Engineer II

Augusta, GA

The Fermentation Engineer is responsible for the design, development, optimization, and scale-up of microbial fermentation processes to produce bio-alternatives, applying fundamental microbial ...

Manus Bio

Fermentation Engineer

Augusta, GA

The Fermentation Engineer supports the development, optimization, and scale-up of microbial fermentation processes for industrial biotechnology applications. This role involves executing lab- and ...

Oath

Fermentation Scientist

Vacaville, CA · On-site

$100K - $130K/yr

About Oath: Oath is a leading microbial sciences company that utilizes natural soil biology to ... The Fermentation Scientist will develop, optimize, and scale microbial fermentation processes ...

Manus

Fermentation Engineer

Augusta, GA

The Fermentation Engineer supports the development, optimization, and scale-up of microbial fermentation processes for industrial biotechnology applications. This role involves executing lab- and ...

Manus Bio

Fermentation Engineer

Augusta, GA · On-site

The Fermentation Engineer supports the development, optimization, and scale-up of microbial fermentation processes for industrial biotechnology applications. This role involves executing lab- and ...

Oath

Fermentation Scientist

Vacaville, CA · Hybrid

$100K - $130K/yr

About Oath: Oath is a leading microbial sciences company that utilizes natural soil biology to ... The Fermentation Scientist will develop, optimize, and scale microbial fermentation processes ...

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How much do microbial fermentation jobs pay per hour?

As of Aug 30, 2026, the average hourly pay for microbial fermentation in the United States is $19.97, according to ZipRecruiter salary data. Most workers in this role earn between $18.27 and $21.15 per hour, depending on experience, location, and employer.

What is microbial fermentation?

Microbial fermentation is a biological process in which microorganisms like bacteria, yeast, or fungi convert organic compounds—such as sugars—into products like alcohol, acids, gases, or bioactive molecules. This process is widely used in food production (like yogurt, cheese, and beer), pharmaceuticals, and biotechnology industries to produce enzymes, antibiotics, and other valuable products. Microbial fermentation can occur under aerobic or anaerobic conditions, depending on the microorganism and the desired end product. It is a key technology for sustainable manufacturing and plays a crucial role in both traditional and modern industries.

What are the key skills and qualifications needed to thrive as a microbial fermentation specialist?

To excel as a Microbial Fermentation Specialist, you need a solid background in microbiology, biochemistry, and fermentation science, usually supported by a degree in a related field. Familiarity with bioreactors, aseptic techniques, analytical instrumentation, and relevant certifications such as GMP or GLP are typically required. Attention to detail, problem-solving, and strong teamwork and communication skills help individuals stand out in this role. These skills ensure the safe, efficient, and reproducible production of microbial products in industrial and research settings.

What are some common challenges faced by professionals working in microbial fermentation, and how can they be addressed?

Professionals in microbial fermentation often face challenges such as contamination control, maintaining optimal growth conditions, and scaling up processes from laboratory to industrial production. Addressing these issues requires rigorous aseptic techniques, constant monitoring of environmental parameters (like pH, temperature, and oxygen levels), and ongoing collaboration with quality assurance and process engineering teams. Regular training, standardized protocols, and clear communication with cross-functional teams help ensure smooth operation and minimize the risk of batch failures.

What is the difference between Microbial Fermentation vs Microbiologist?

AspectMicrobial FermentationMicrobiologist
Required CredentialsLaboratory training, certifications in fermentation techniquesDegree in microbiology or related field, certifications may vary
Work EnvironmentResearch labs, production facilities, biotech companiesResearch labs, healthcare, environmental agencies
Industry UsageBiotech, food & beverage, pharmaceuticalsHealthcare, research, environmental science

Microbial Fermentation specialists focus on applying fermentation processes to produce products, while microbiologists study microorganisms broadly. Both roles often require similar educational backgrounds and work in laboratory settings, but their primary goals differ: one is process-oriented, the other research-oriented.

More about Microbial Fermentation jobs

What states have the most Microbial Fermentation jobs?

States with the most job openings for Microbial Fermentation jobs include:

What job categories do people searching Microbial Fermentation jobs look for?

The top searched job categories for Microbial Fermentation jobs are:

Microbial Fermentation jobs near you
Infographic showing various Microbial Fermentation job openings in the United States as of August 2026, with employment types broken down into 76% Full Time, 18% Part Time, 1% Temporary, 4% Contract, and 1% Nights. Highlights an 81% Physical, 1% Hybrid, and 18% Remote job distribution, with an average salary of $41,534 per year, or $20 per hour.

Fermentation Engineer II

Augusta, GA • On-site

Manus Bio
Biotechnology Research and Development • 51 - 200 employees
Learn more about Manus Bioexternal

Full-time

Re-posted 14 days ago

Job description

Fermentation Engineer II Augusta, Georgia, United States, Full-Time
Manus works across industries and value chains to accelerate the transition to BioAlternatives � better performing and more sustainable versions of complex molecules traditionally sourced from plants, animals, or fossil fuels. Our platform is proven to work across scales, bridging the Valley of Death between lab and manufacturing more efficiently and more reliably to deliver the benefits of synthetic biology today. We are seeking a self-motivated and highly organized individual for a position that will specialize in and lead all laboratory operations at our Boston BioFacility.
We are seeking a Fermentation Engineer II to be a part of our process development team. This role focuses on fermentation science and development to bring new commercial bioprocesses through the Manus R&D pipeline. The Fermentation Engineer is responsible for the design, development, optimization, and scale-up of microbial fermentation processes to produce bio-alternatives, applying fundamental microbial physiology and fermentation science knowledge to achieve applied bioprocess objectives. This role bridges R&D and manufacturing, leading fermentation development from lab through pilot and commercial scales while ensuring robust, cost-effective, and scalable operations.
Why work at Manus:
  • Opportunity � For motivated, results-oriented team members, our growth creates opportunities for personal and professional advancement.
  • Accountability � You are given the resources you need to succeed and the freedom to make it happen; in return, we hold each other accountable for our high expectations.
  • Passion � We love what we do and enjoy working with others who feel the same way. We embrace the challenge and hard work that comes with working on the cutting edge.

Overview
Manus works across industries and value chains to accelerate the transition to BioAlternatives � better performing and more sustainable versions of complex molecules traditionally sourced from plants, animals, or fossil fuels. Our platform is proven to work across scales, bridging the Valley of Death between lab and manufacturing more efficiently and more reliably to deliver the benefits of synthetic biology today.
We are seeking a Fermentation Engineer II or Senior Fermentation Engineer to be a part of our process development team. This role focuses on fermentation science and development to bring new commercial bioprocesses through the Manus R&D pipeline. The Fermentation Engineer is responsible for the design, development, optimization, and scale-up of microbial fermentation processes to produce bio-alternatives, applying fundamental microbial physiology and fermentation science knowledge to achieve applied bioprocess objectives. This role bridges R&D and manufacturing, leading fermentation development from lab through pilot and commercial scales while ensuring robust, cost-effective, and scalable operations.
This hands-on position requires a desire and ability to work as an integral part of a multidisciplinary team, as well as the demonstration of a high degree of flexibility, creativity, and initiative. This person will be expected to play an integral part of Manus's process development team located in Augusta, GA.
Responsibilities
Process Development & Optimization
  • Design and optimize fermentation processes (batch, fed-batch, continuous) for microbial or cell culture systems.
  • Develop strategies to improve yield, productivity, titer, and process robustness.
  • Conduct media optimization, feeding strategies, and metabolic performance analysis.
  • Apply statistical tools (DOE, multivariate analysis) to accelerate process improvement.

Scale-Up & Technology Transfer
  • Lead fermentation scale-up activities from laboratory (bench-scale) to pilot and commercial manufacturing (e.g., 1L ? 4,000L ?40,000L).
  • Identify and mitigate scale-dependent risks (mixing, oxygen transfer, heat removal, shear sensitivity).
  • Support technology transfer to manufacturing sites or CMOs.
  • Develop scale-down models to troubleshoot commercial process deviations.

Process Characterization & Validation
  • Define critical process parameters (CPPs) and critical quality attributes (CQAs).
  • Support process characterization studies and regulatory submissions (as applicable).
  • Develop control strategies for consistent production performance.

Data Analysis & Digital Tools
  • Analyze process data using advanced analytics, modeling, and visualization tools.
  • Develop predictive models for fermentation performance and scale-up.
  • Implement digital tools (PAT, soft sensors, automation strategies) to improve process control.

Leadership & Collaboration
  • Lead cross-functional project teams involving strain engineering, downstream processing, and manufacturing.
  • Mentor junior engineers and scientists.
  • Collaborate with external partners, equipment vendors, and academic collaborators.

Safety & Compliance
  • Ensure compliance with EHS, GMP (if applicable), and regulatory guidelines.
  • Design processes with safety, sustainability, and regulatory considerations in mind.

Basic Qualifications
  • PhD with 5+ years in Industrial Fermentation Sciences, Engineering or related field

Required Technical Expertise
  • Expertise in bench and pilot-scale fermentation process development
  • Expertise in microbial physiology
  • Experience statistical tools for media design
  • Critical thinker with enthusiasm for deriving solutions to complex challenges

Preferred Experience
  • Experience in scale-up of fermentation processes from lab-scale to pilot plant and/or production-scale
  • Experience with analytical instrumentation (GC, LC)
  • Experience with fermentation modeling

Apply