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Compensation Controller Jobs in Boston, MA (NOW HIRING)

The Controller will lead all day-to-day finance operations and have functional responsibility for ... and stock-compensation accounting (using SEC GAAP as a pre-IPO company). * Partner with the ...

Controller

Burlington, MA · On-site

$150 - $200/hr

... compensation (ASC 718), warrants and complex equity instruments (ASC 480/815), business ... Prior Controller or Assistant Controller experience at a US public company, OR Controller ...

Atomic Coffee Roasters is seeking a technology-forward Controller to own our accounting function ... Multi-entity or intercompany accounting experience a plus * CPA a plus, not required Compensation ...

Controller

Danvers, MA · On-site

$100K - $120K/yr

Atomic Coffee Roasters is seeking a technology-forward Controller to own our accounting function ... Multi-entity or intercompany accounting experience a plus * CPA a plus, not required Compensation ...

Controller

Danvers, MA · On-site

$100 - $125/hr

Atomic Coffee Roasters is seeking a technology-forward Controller to own our accounting function ... Multi‑entity or intercompany accounting experience a plus * CPA a plus, not required Compensation ...

As a Property Controller, you will be responsible for all aspects of the accounting assigned ... Pay is not considered compensation until it is earned, vested and determinable. The amount and ...

Controller

Auburndale, MA · On-site

$125 - $150/hr

We're looking for a Controller who wants to own accounting, payroll, and day-to-day people ... Compensation: $110,000 to $150,000 base, depending on experience. * Benefits: Health and dental ...

New

Pay Range: $245,000 - $340,000 total cash compensation plus equity * Healthcare: 100% Medical, dental, and vision coverage for employee * Stock Options: Ownership in a fast-growing venture-backed ...

1.2. Controller

Burlington, MA · On-site

$245K - $340K/yr

We are seeking a hands-on Controller to own the accounting function of a fast-growing manufacturing ... This pay range reflects best estimate for the total cash compensation which includes salary ...

Showing results 21-40

Compensation Controller information

See Boston, MA salary details

$59.8K

$129.8K

$190.7K

How much do compensation controller jobs pay per year?

As of Sep 7, 2026, the average yearly pay for compensation controller in Boston, MA is $129,821.00, according to ZipRecruiter salary data. Most workers in this role earn between $105,400.00 and $150,500.00 per year, depending on experience, location, and employer.

What is a compensation controller?

Compensation Controllers are finance professionals responsible for overseeing and managing an organization's compensation programs, such as salaries, bonuses, and benefits. They ensure that compensation practices comply with legal regulations and align with the company's pay philosophy. Their duties often include analyzing compensation data, preparing reports, budgeting for employee compensation, and collaborating with HR and management to develop competitive pay structures. By maintaining effective compensation controls, they help attract and retain talent while managing costs.

What are the key skills and qualifications needed to thrive as a compensation controller?

To thrive as a Compensation Controller, you need strong analytical and financial skills, in-depth knowledge of compensation structures, and typically a degree in finance, accounting, or a related field. Familiarity with HRIS systems, payroll software, and advanced Excel or data analytics tools is essential, along with relevant certifications such as CCP (Certified Compensation Professional). Exceptional attention to detail, discretion, and strong communication skills help you collaborate effectively with HR and leadership teams. These competencies ensure accurate compensation management, regulatory compliance, and support for strategic decision-making within the organization.

How does a compensation controller typically collaborate with HR and finance teams to ensure accurate payroll and benefits administration?

A Compensation Controller works closely with both HR and finance departments to ensure that payroll, bonuses, and benefits are administered accurately and in compliance with company policies and legal requirements. They often coordinate with HR to interpret compensation policies and analyze market data, while partnering with finance to reconcile payroll expenses and manage compensation budgets. Regular cross-departmental meetings and data-sharing are common, allowing the Compensation Controller to identify discrepancies, resolve issues, and support strategic compensation planning. Effective collaboration is key to maintaining transparency and ensuring all employee compensation is processed correctly and on time.

What is the difference between Compensation Controller vs Payroll Manager?

AspectCompensation ControllerPayroll Manager
Primary FocusOversees compensation policies, salary structures, and complianceManages payroll processing, employee payments, and related operations
CredentialsOften requires HR or finance certifications, experience in compensationTypically requires payroll certifications or HR experience
Work EnvironmentCorporate HR or finance departments in various industriesPayroll or HR departments, often within larger organizations
Employer UsageUsed in organizations with complex compensation structuresCommon in companies with large payroll operations

The Compensation Controller focuses on designing and managing compensation strategies and policies, ensuring compliance and competitiveness. In contrast, the Payroll Manager handles the day-to-day processing of employee payments. While both roles require understanding of compensation and payroll systems, the Compensation Controller has a broader strategic role, whereas the Payroll Manager is more operational.

What are popular job titles related to Compensation Controller jobs in Boston, MA?

For Compensation Controller jobs in Boston, MA, the most frequently searched job titles are:

What job categories do people searching Compensation Controller jobs in Boston, MA look for?

The top searched job categories for Compensation Controller jobs in Boston, MA are:

Full-time

Re-posted 8 days ago


Key responsibilities

  • Lead all day-to-day finance operations and manage the accounting process and general ledger.

  • Support external audit requirements and prepare financial statements, analyses, and reports.

  • Manage purchase orders, accounts payable/receivable, and reconcile intercompany and cash accounts.


Job description

 

The Controller will lead all day-to-day finance operations and have functional responsibility for the accounting process and maintenance of the general ledger, currently maintained using QuickBooks Online. In this role you will work closely across the leadership team regarding finance and accounting procedures, including interaction with a subsidiary operating in France. You will support the accounting needs of procurement, manufacturing, and sales leaders and research and development (in France and the US). 

Principal Duties and Responsibilities: 

  • Support external audit requirements related to revenue recognition, lease accounting and stock-compensation accounting (using SEC GAAP as a pre-IPO company).   
  • Partner with the leadership team to develop standard costs to manufacture the product and to estimate ending inventory at the end of each month.
  • Implement a budgeting process and forecasting cash flows to be used monthly.
  • Manage purchase orders and AP/AR.
  • Ensure accuracy and compliance with company policies for transactions recorded/posted into the general ledger for accounts payable (using Bill.com), employee expenses (using Certify,) payroll (using TriNet), and stock-compensation (using Equity Edge currently maintained at the company's law firm).
  • Reconcile intercompany accounts monthly related to one subsidiary located in France, including currency translation calculations prepared by the subsidiary into US Dollars (the functional currency for US GAAP).
  • Reconcile all cash accounts daily to ensure all transactions are recorded accurately and timely in the general ledger.
  • Prepare draft consolidated financial statements each month (currently using Excel downloaded information from QuickBooks).
  • Prepare timely and accurate analyses, summaries, and reports of financial data on the operating progress of the company as requested. 

Required Qualifications 

  • Business or Accounting degree mandatory, a master's in business administration is preferred.
  • Minimum 10 years' experience in a senior management role ideally with both external audit and in-house financial management experience gained in a high growth organization.
  • CPA preferred.  
  • Working knowledge of QuickBooks budget, purchasing and customer invoicing a plus
  • Excellent judgment, creative problem solver including negotiation, self-reliant, and results oriented.
  • Energetic, flexible, collaborative, and proactive; a team leader who can positively and productively impact both strategic and tactical finance and administration initiatives.  
  • Exceptional written, oral, interpersonal, and presentation skills and the ability to effectively interface with senior management, the company's board of directors, and team.
  • This is an on-site, full-time role in Weston, MA. 

Company Description  

At Aquyre Biosciences Inc. (Cambridge, MA) our mission is to become the standard of care for tissue adequacy assessment. What Makes Aquyre Biosciences Different? Our technology combines two unique and proprietary technologies in one exam, offering a non-invasive, non-destructive, intra-procedural tissue adequacy assessment, in freshly excised tissue, within 2 minutes. Our technologies include Full-Field Optical Coherence Tomography (FFOCT) which offers an en-face (transverse), high resolution, 3D image of biopsy tissue micro-architecture, at a resolution of 1m. FFOCT also allows for depth exploration at different focal planes, without compromising 1m resolution. The second technology, Dynamic Cell Imaging (DCI) is used to enhance the cellular contrast by capturing the residual microscopic intracellular activity and behaviors in freshly excised tissue, without staining or destroying the tissue.  

Why you'll love working here: 

Besides great benefits, we offer great perks, like an onsite gym, unlimited sodas and coffee, global cafeteria, pool table and a ping pong table.  We have a smart yet humble collaborative team of 25 people that is on a mission to reduce patient risk and improve the accuracy of patient diagnoses instantly.  
 

Aquyre Biosciences Inc. is an equal opportunity employer, and all qualified applicants will receive consideration for employment regardless of race, color, religion, sex, sexual orientation, disability status, or any other characteristic protected by law.