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Clinical Systems Analyst Jobs in Minnesota (NOW HIRING)

Mayo Clinic

Radiology Systems Analyst

Rochester, MN · On-site

$80K - $120K/yr

Responsibilities Supports systems and informatics solutions across all clinical and/or business ... This includes analysis and support for installed systems, as well as implementation and integration ...

Intermountain Health

HIM Systems Analyst

Saint Paul, MN · On-site

$31.01 - $48.84/hr

Collaborates with clinical, nonclinical and technical support teams to identify system needs and ... Data Analysis * HIM Software * Project Management * Detail Oriented * Workflow Process * Health ...

Apex Systems

IT Systems Analyst

Rochester, MN · On-site

Job#: 3038867 IT Systems Analyst Location: Rochester, Minnesota (Remote) Role Overview This ... Function as a liaison between clinical, business, and technical areas during the planning process.

Deegit Inc

QARA

Plymouth, MN · On-site

... analysis) Skill and Experience Details: Minimum Experience Required: Mandatory Skills: Medical Data Acquisition and Storage Consulting Desirable Skills: Clinical Systems, Medical Devices - QARA ...

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All JobsClinical Systems Analyst JobsClinical Systems Analyst Jobs in Minnesota

Clinical Systems Analyst information

See Minnesota salary details

$53.9K

$91.9K

$130.3K

How much do clinical systems analyst jobs pay per year?

As of Sep 2, 2026, the average yearly pay for clinical systems analyst in Minnesota is $91,888.00, according to ZipRecruiter salary data. Most workers in this role earn between $74,900.00 and $106,300.00 per year, depending on experience, location, and employer.

What is a clinical systems analyst?

A clinical systems analyst oversees the computer information systems at a hospital or other medical facility. As a clinical systems analyst, your job duties include the development of software applications to support hospital requirements, troubleshooting computer system issues, and testing changes to the facility's computer software. The qualifications to have a career as a clinical systems analyst include a bachelor’s degree in computer science and experience working in a medical setting.

What are the key skills and qualifications needed to thrive as a clinical systems analyst, and why are they important?

To thrive as a Clinical Systems Analyst, you need a solid background in healthcare IT, data analysis, and systems integration, often supported by a degree in health informatics or a related field. Familiarity with electronic health record (EHR) systems such as Epic or Cerner, as well as certifications like CPHIMS or experience with HL7 standards, is valuable. Strong problem-solving, communication, and project management skills help bridge the gap between clinical staff and IT teams. These skills ensure efficient implementation and optimization of clinical systems, ultimately improving patient care and organizational workflow.

How does a clinical systems analyst typically collaborate with healthcare providers to improve electronic health record (EHR) systems?

Clinical Systems Analysts work closely with physicians, nurses, and other healthcare staff to understand their workflow needs and address challenges with EHR systems. They gather user feedback, translate clinical requirements into technical specifications, and often participate in system customization, testing, and training sessions. Regular collaboration ensures that the EHR supports clinical processes efficiently, improves patient care, and complies with healthcare regulations. This role frequently involves cross-functional teamwork, including IT departments and clinical leadership, to drive continuous system improvements.

How much does a clinical systems analyst make?

The average salary for a clinical systems analyst is around $80,000 to $100,000 annually, depending on experience, certifications, and the healthcare setting. Salaries can vary based on location, with higher wages typically found in metropolitan areas and institutions requiring specialized knowledge of electronic health records (EHR) systems and healthcare IT tools.
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Clinical Systems Analyst jobs near you
Infographic showing various Clinical Systems Analyst job openings in Minnesota as of August 2026, with employment types broken down into 1% As Needed, 82% Full Time, 12% Part Time, 4% Contract, and 1% Nights. Highlights an 90% Physical, 2% Hybrid, and 8% Remote job distribution, with an average salary of $91,888 per year, or $44.2 per hour.

Sr Clinical Systems analyst

Hazelden Betty Ford Foundation

Center City, MN • On-site

$84K/yr

Full-time

Medical, Dental, Vision, Retirement, PTO

Re-posted 12 days ago

Job description

Responsibilities
The Senior Clinical Technology Systems Analyst role will design, develop, and configure the clinical applications to enable business goals, objectives, and strategy. The role will assist with Tier 4 support of the clinical applications, support deliverables of projects, and transition deliverables to operational support at the close of project efforts. The role will coordinate work efforts with project stakeholders, Technology Services staff, and clinical operators to ensure on time and on budget delivery of project and enhancement work efforts.
  • Lead release and deployment management.
  • Project Coordination.
  • Provide support and systems administration.
  • Relationship management.

Qualifications
Required Qualifications:
  • Bachelor's degree in computer science, information systems, healthcare informatics, or a closely related field or 6 years of related work experience.
  • Minimum of 5+ years of experience supporting complex applications to include design, installation and configuration, upgrades, maintenance, and problem resolution to ensure business continuity, failover, and high availability.
  • Electronic health record certification or equivalent vendor administered course work of 60 or more hours.
  • Experience with coding languages such as CCL, HTML, VB, Javascript, and RTF.
  • Experience with an ITSM tool.
  • Experience leveraging Agile and/or lean methodologies and principles.
  • Experience supporting application interfaces, systems processes, and connected devices.
  • Experience in coordinating project/enhancement efforts to deliver on time and on budget.
  • Excellent problem-solving and analytical skills.
  • Effective communication and interpersonal skills.
  • Ability to work collaboratively in a multidisciplinary team.

Preferred Qualifications:
  • Knowledge of Hazelden Betty Ford Foundation business practices.
  • Experience in healthcare, including behavioral health.
  • Experience with Oracle Health Millennium platform.
  • Experience with project management.
  • Successful completion of Cerner Millennium: Fundamentals.
  • Successful completion of Cerner Millennium: Architecture, Troubleshooting, and Issue Management.
  • Successful completion of Cerner: Discern Explorer 1 WBT.

Overview
The Hazelden Betty Ford Foundation is the largest nonprofit addiction recovery organization in the United States. It is also one of the most mission-driven places you will find. The Hazelden Betty Ford Foundation team is passionate about providing hope and ultimately healing. As a living, growing and evolving institution, the Hazelden Betty Ford Foundation is - at our core- a people-powered organization. Hazelden Betty Ford Foundation is comprised of 1600+ employees, seventeen treatment sites and produces $190 million dollars in annual revenue. This exemplary organization serves nearly 25,000 people annually and is committed to provide hope and healing for those experiencing addiction to alcohol and other drugs.
What makes this organization unique is its total ecosystem approach to prevention, education, research, advocacy and treatment. All of the parts of the organization work together to inform, develop and deliver evidence- based practices that help people reclaim their futures and restore their hope.
Being "a best place to work" is a strategic goal of Hazelden Betty Ford Foundation and it's a goal that every employee plays an active role in helping to achieve. Our culture is a reflection of how encouraged and energized we each feel about contributing our ideas and performing to our greatest ability. Join us and do meaningful work.
We deeply value our employees. Working at Hazelden Betty Ford Foundation includes a comprehensive benefits package, including:
  • Competitive Health, Dental and Vision Plans
  • Retirement savings plan with employer match
  • Paid time-off
  • Tuition reimbursement

The Hazelden Betty Ford Foundation is proud to be an equal opportunity and affirmative action employer. We believe that diversity and inclusion among our colleagues is critical to our success as a force of healing and hope for individuals, families and communities affected by addiction to alcohol and other drugs; and we seek to recruit, develop and retain the most talented people from a diverse candidate pool.
Salary new (max and min)
USD $84,295.00 - USD $122,834.00 /Yr.

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