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Remote Nonprofit Controller Jobs (NOW HIRING)

Controller

Washington, DC · On-site +1

$145K - $155K/yr

S. Remote REPORTS TO: Chief Financial Officer POSITION SUMMARY The Controller leads the ... Ensure timely, accurate financial statements in accordance with GAAP and nonprofit accounting ...

Controller 519 Southwest Blvd, Kansas City, MO 64108, USA This position is based in the Kansas City ... remote or hybrid work arrangements. e2E helps startups, small businesses, and nonprofits ...

Controller - Consulting

Kansas City, MO · On-site +1

$95K - $110K/yr

Controller 519 Southwest Blvd, Kansas City, MO 64108, USA This position is based in the Kansas City ... remote or hybrid work arrangements. e2E helps startups, small businesses, and nonprofits ...

... remote work environment Partner cross-functionally with finance leadership and operational ... and nonprofit accounting standards Demonstrated experience with consolidations, reporting ...

Senior Controller

Los Angeles, CA · Remote

$50 - $60/hr

... nonprofits located all across the US. We specialize in cutting-edge technology and partner with ... Experience in a remote environment is a plus * Clear and concise communication - both written and ...

Full Remote or Hybrid to Windsor, Connecticut What You'll Do: * Manage oversight of the daily ... Preferred experience in both for-profit and non-profit environments, with a solid understanding of ...

CFO - Nonprofit

$60 - $90/hr

You'll work alongside Controllers and Accountants to ensure comprehensive financial leadership that ... We strive to meet team members where they're at - so our roles vary between onsite and fully remote.

Support Controller review process Nonprofit & Government Contractor Accounting * Maintain proper ... Hourly rate commensurate with experience * Part-time, remote position Ideal Candidate This role is ...

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Showing results 1-20

Remote Nonprofit Controller information

See salary details

$55K

$119.5K

$175.5K

How much do remote nonprofit controller jobs pay per year?

As of May 31, 2026, the average yearly pay for remote nonprofit controller in the United States is $119,497.00, according to ZipRecruiter salary data. Most workers in this role earn between $97,000.00 and $138,500.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a Remote Nonprofit Controller, and why are they important?

To thrive as a Remote Nonprofit Controller, you need expertise in nonprofit accounting, financial reporting, and a bachelor's degree in accounting or finance, often accompanied by a CPA or similar certification. Familiarity with accounting software like QuickBooks, fund accounting systems, and nonprofit grant management tools is typical. Strong organizational skills, attention to detail, and effective communication are crucial soft skills for collaborating remotely and managing multiple funding sources. These competencies ensure accurate financial oversight, regulatory compliance, and mission-driven stewardship of nonprofit resources.

How does a Remote Nonprofit Controller effectively collaborate with program staff and executive leadership to ensure accurate financial reporting?

As a Remote Nonprofit Controller, you will frequently collaborate with program managers and executive leadership through regular virtual meetings and cloud-based financial systems. You’ll be responsible for translating program activities into accurate financial data, clarifying budget variances, and providing guidance on fiscal compliance. Effective communication skills and proficiency with collaborative financial software are essential, as you’ll often need to explain complex financial concepts to non-financial colleagues and support strategic decision-making across the organization.

What is a Remote Nonprofit Controller?

A Remote Nonprofit Controller is a financial professional who manages the accounting and financial reporting functions for a nonprofit organization while working remotely. They are responsible for overseeing budgets, preparing financial statements, ensuring compliance with regulations, and supporting the executive team in financial decision-making. Their work helps maintain transparency and accountability in the organization's use of funds, even though they do not work on-site. Remote Nonprofit Controllers often use cloud-based accounting systems and digital communication tools to collaborate with team members.

What is the difference between Remote Nonprofit Controller vs Remote Nonprofit Accountant?

AspectRemote Nonprofit ControllerRemote Nonprofit Accountant
CredentialsCPA or equivalent, accounting degreeAccounting degree, CPA preferred but not required
Work EnvironmentOversees financial strategy, manages accounting teamHandles day-to-day bookkeeping, prepares financial reports
Employer & Industry UsageNonprofit organizations, often in leadership rolesNonprofits, supporting financial record-keeping
Search & Comparison IntentUnderstanding strategic financial managementFocus on accounting tasks and compliance

The Remote Nonprofit Controller typically holds a CPA and manages financial strategy and oversight, while the Remote Nonprofit Accountant focuses on daily bookkeeping and reporting. Both roles are essential in nonprofit finance but differ in scope and responsibilities.

More about Remote Nonprofit Controller jobs
What cities are hiring for Remote Nonprofit Controller jobs? Cities with the most Remote Nonprofit Controller job openings:
What are the most commonly searched types of Nonprofit Controller jobs? The most popular types of Nonprofit Controller jobs are:
What states have the most Remote Nonprofit Controller jobs? States with the most job openings for Remote Nonprofit Controller jobs include:
Infographic showing various Remote Nonprofit Controller job openings in the United States as of May 2026, with employment types broken down into 100% Full Time. Highlights an 100% Remote job distribution, with an average salary of $119,497 per year, or $57.5 per hour.
Manager/Controller - Outsourced Accounting Services (Nonprofit)

Manager/Controller - Outsourced Accounting Services (Nonprofit)

Lindsay & Brownell

Fort Lauderdale, FL • On-site, Remote

$99.64K - $119.46K/yr

Full-time

Posted 7 days ago


Job description

Job Description

At EisnerAmper, we look for individuals who welcome new ideas, encourage innovation, and are eager to make an impact. Whether you're starting out in your career or taking your next step as a seasoned professional, the EisnerAmper experience is one-of-a-kind. You can design a career you'll love from top to bottom - we give you the tools you need to succeed and the autonomy to reach your goals.

We are seeking an Accounting Manager/Controller with Nonprofit Industry experience to join our Outsourced Accounting & CFO practice, in a fully remote role. This team helps our clients transform their organizations with a collaborative approach that allows them to seamlessly mitigate risk, overcome challenges, meet deadlines, and identify personnel to help them with their workforce needs.

Please note that this is a fully-remote position, but you must be available to work Eastern and/or Central time zones.

What it Means to Work for EisnerAmper:
  • You will get to be part of one of the largest and fastest growing accounting and advisory firms in the industry

  • You will have the flexibility to manage your days in support of our commitment to work/life balance

  • You will join a culture that has received multiple top "Places to Work" awards

  • We believe that great work is accomplished when cultures, ideas and experiences come together to create new solutions

  • We understand that embracing our differences is what unites us as a team and strengthens our foundation

  • Showing up authentically is how we, both as professionals and a Firm, find inspiration to do our best work

What work you will be responsible for:
  • Prepare and/or direct preparation of financial statements, business activity reports, financial position forecasts, budgets, or reports required by regulatory agencies.

  • Evaluate needs for procurement of funds and investment of surpluses and make appropriate recommendations.

  • Develop internal control policies, guidelines, and procedures for activities such as budget administration, cash and credit management, and accounting.

  • Coordinate and direct the financial planning, budgeting, procurements, or investment activities for all or part of an organization. Prepare financial information.

  • Monitor ratio and key performance indicators (KPI).

  • Monitor and evaluate the performance of accounting and other financial staff, recommending and implementing actions.

  • Advise management on short-term and long-term financial objectives, policies, and actions.

  • Communicate on a regular basis with boards, bankers, investors, constituents, etc.; may include prepping for and/or hosting board presentations.


Basic qualifications:
  • BA/BS degree in accounting or related field required

  • 6+ of relevant accounting, audit and/or financial statements preparation experience

  • Prior supervisory experience

Preferred/Desired qualifications:
  • Relevant experience in the Nonprofit Industry is highly preferred

  • An understanding of generally accepted accounting principles (FASB/SFAS) or other comprehensive basis of accounting

  • Public accounting experience is preferred

  • CPA certification or exams passed is preferred

  • Accounting back-office experience

  • Aptitude for developing and maintaining a thorough working knowledge of accounting software and systems. QuickBooks or Intacct experience is preferred.

  • Proficiency with applicable software (Microsoft Excel, Word, Outlook, etc.).

  • Strong organization skills/goal orientation/self-motivation.

  • Ability to handle multiple client files and deadlines at one time.

  • Ability to handle pressure in a positive professional manner.

  • Excellent interpersonal skills.

  • Communication that is clear, concise, and considerate of the needs of others.

  • Ability to work cooperatively with others and value the different contributions people make.

  • Proven success in managing work and key client relationships to exceed client expectations.

  • Ability to perform in challenging situations in a positive professional manner.

For Minnesota, Colorado and Illinois, the expected salary range for this position is between $99,637 and $119,456. The range for the position in other geographies may vary based on market differences. The actual compensation will be determined based on experience and other factors permitted by law.

EisnerAmper is proud to be a merit-based employer. We do not discriminate on the basis of veteran or disability status orany protected characteristics under federal, state, or local law.

About our Outsourced Services Team:

The EisnerAmper Outsourcing group brings our team's specialized knowledge of accounting directly into the offices of a wide range of partners. When we work with a client, we become part of their business, and we don't take that lightly. Armed with cutting-edge industry technology and outsourcing practices, we're given the tools to both provide best-in-class service and constantly grow as professionals.

Through our team-based culture of creativity and collaboration across all levels, we hold each other accountable to always look for new innovative ways to grow as a group, better serve our clients, and advance in our careers.

Because we are a rapidly growing group, EisnerAmper Outsourcing employees have the opportunity to make a lasting impact on the business and its direction. Everyone has a voice to bring new ideas to the table, which are backed by the confidence, expertise, and global reach of the larger firm.

About EisnerAmper:

EisnerAmper is one of the largest accounting, tax, and business advisory firms, with nearly 5,000 employees including 500 partners across the world. We combine responsiveness with a long-range perspective; to help clients meet the pressing issues they face today and position them for success tomorrow.

Our clients are enterprises as diverse as sophisticated financial institutions and start-ups, global public firms, and middle-market companies, as well as high net worth individuals, family offices, not-for-profit organizations, and entrepreneurial ventures across a variety of industries. We are also engaged by the attorneys, financial professionals, bankers, and investors who serve these clients.

Should you need any accommodations to complete this application please email: talentacquisition@eisneramper.com

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Preferred Location:
Fort Lauderdale