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Employee Payroll Jobs in Rochester, NY (NOW HIRING)

Process employee payroll on time and through the appropriate channels with strict attention to detail. Manage external time keeping software to ensure accuracy and ease of use and functionality.

Enters, researches, and analyzes employee payroll and tax related data including garnishment, absence management or new hire necessary to process and meet weekly and bi-weekly payroll processing.

Corporate Senior Payroll Specialist

Rochester, NY · On-site +1

$20.30 - $32.40/hr

Enters, researches, and analyzes employee payroll and tax related data including garnishment, absence management or new hire necessary to process and meet weekly and bi-weekly payroll processing.

Payroll Administrator

Rochester, NY · On-site +1

$24.25 - $32.75/hr

Manage payroll activities across multiple states and jurisdictions, including employee setup, tax withholding, unemployment requirements, work-location changes, and other payroll-related compliance ...

Payroll Specialist

Rochester, NY · On-site

$23 - $25.60/hr

Overview The Payroll Specialist is responsible for processing payroll and maintaining the employee database regarding salary, pay and timekeeping systems. Why work for DePaul? * Make a positive ...

Payroll Specialist

Rochester, NY · On-site

$25 - $28/hr

The Payroll Specialist has primary responsibility to accurately process employee pay weekly by reviewing and verifying employee timecards and hours worked. The Payroll Specialist will assist with ...

Overview The Payroll Specialist is responsible for processing payroll and maintaining the employee database regarding salary, pay and timekeeping systems. Why work for DePaul? * Make a positive ...

The Payroll Specialist has primary responsibility to accurately process employee pay weekly by reviewing and verifying employee timecards and hours worked. The Payroll Specialist will assist with ...

The Payroll Specialist is responsible for processing payroll and maintaining the employee database regarding salary, pay and timekeeping systems. Why work for DePaul? * Make a positive difference in ...

Research and resolve payroll discrepancies, employee inquiries, tax notices, and compliance issues. * Prepare, calculate, and process monthly sales commission reports, ensuring accurate and timely ...

Payroll Analyst

Rochester, NY · On-site

$70K - $85K/yr

Research and resolve payroll discrepancies, employee inquiries, tax notices, and compliance issues. * Prepare, calculate, and process monthly sales commission reports, ensuring accurate and timely ...

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Employee Payroll information

See Rochester, NY salary details

$14

$27

$38

How much do employee payroll jobs pay per hour?

As of Sep 2, 2026, the average hourly pay for employee payroll in Rochester, NY is $27.03, according to ZipRecruiter salary data. Most workers in this role earn between $22.31 and $30.34 per hour, depending on experience, location, and employer.

What does an employee payroll specialist do?

Employee payroll specialists are responsible for processing and managing employee compensation within an organization. Their main duties include calculating wages, withholding taxes, and ensuring employees are paid accurately and on time. They also handle payroll records, resolve discrepancies, and ensure compliance with government regulations. Additionally, they may manage benefits deductions and respond to employee payroll inquiries.

What are the key skills and qualifications needed to thrive as an employee payroll specialist, and why are they important?

To thrive as an Employee Payroll Specialist, you need strong attention to detail, solid math skills, and a foundational understanding of payroll laws and regulations, often supported by a degree in accounting or a related field. Familiarity with payroll software such as ADP, Paychex, or QuickBooks, as well as certifications like the Fundamental Payroll Certification (FPC), are typically required. Excellent organizational skills, discretion, and effective communication set top performers apart in this role. These skills and qualities are crucial to ensure accurate, timely payroll processing while maintaining compliance and confidentiality.

What are some common challenges faced by professionals working in employee payroll, and how can they be managed?

Professionals in Employee Payroll often encounter challenges such as keeping up with frequently changing tax laws, managing tight payroll deadlines, and ensuring absolute accuracy in calculations. To manage these challenges, it's essential to stay updated through regular training, utilize reliable payroll software to minimize errors, and maintain clear communication with HR and finance teams. Attention to detail and strong organizational skills are also key to handling sensitive employee data and addressing payroll discrepancies efficiently.

How to become an employee payroll?

To become an employee payroll specialist, you typically need a high school diploma or equivalent, along with knowledge of payroll software and payroll laws. Many employers prefer candidates with experience in accounting or human resources and may require certifications such as the Certified Payroll Professional (CPP). Strong attention to detail and familiarity with tools like Excel are also beneficial.

Is doing employee payroll a hard job?

Employee payroll involves calculating and processing employee wages, taxes, and deductions, often using payroll software or spreadsheets. The job requires attention to detail, knowledge of tax laws, and accuracy to ensure employees are paid correctly and on time, which can be challenging during complex payroll periods or when handling compliance issues.

What job categories do people searching Employee Payroll jobs in Rochester, NY look for?

The top searched job categories for Employee Payroll jobs in Rochester, NY are:

What cities near Rochester, NY are hiring for Employee Payroll jobs?

Cities near Rochester, NY with the most Employee Payroll job openings:

Infographic showing various Employee Payroll job openings in Rochester, NY as of August 2026, with employment types broken down into 100% Full Time. Highlights an 100% In-person job distribution, with an average salary of $56,222 per year, or $27 per hour.

Benefits & Payroll Administrator

Fisher Associates

Rochester, NY • On-site

$65K - $78K/yr

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Re-posted 3 days ago


Job description

Description

Support People. Strengthen Processes. Make Every Employee Interaction Count.

Are you a detail-oriented HR professional who enjoys helping employees navigate benefits, payroll, leaves of absence, and HR processes with clarity and care in Rochester, NY? Fisher Associates is seeking a Benefits & Payroll Administrator to support the administration of our benefits, leave, payroll, and HRIS processes while delivering high-quality employee experience. This role serves as a subject matter resource to employees, managers, benefits vendors, and third-party administrators; interprets plan documents, policies, and regulatory requirements; recommends process improvements; and exercises discretion and independent judgment in administering and resolving benefit, leave, payroll, life event, and engagement programs to drive accuracy, compliance, and a seamless employee experience.


About Fisher Associates

At Fisher Associates, we are a multidisciplinary design services firm with nine locations nationwide. Our services span civil/site engineering, transportation engineering, landscape architecture, planning, environmental services, land surveying, GIS, construction inspection, precast, and construction engineering-each offering opportunities to shape communities and improve lives.


What You Will Do

Summary

The primary duty of this position is the administration, interpretation, coordination, and continuous improvement of company benefits, leave, payroll, and other HR operations programs directly related to Fisher Associates' operations. The role works under general supervision and regularly exercises discretion and independent judgment on matters of significance, including benefit eligibility, leave coordination, payroll-related issue resolution, compliance documentation, vendor escalation, and process improvement recommendations.


Benefit and Leave Administration

  • Administer employee benefit programs, including medical, dental, vision, FSA, 401(k), life, disability, wellness, and related offerings.
  • Conduct new hire benefits orientations, educating employees on benefit offerings, deductions, timekeeping, and payroll timelines.
  • Serve as a primary point of contact for employee benefits, payroll, leave, and life event questions, providing clear, timely guidance with professionalism, empathy, and confidentiality.
  • Administer benefit enrollments, qualifying life events, status changes, and employee updates in accordance with plan rules, company procedures, and regulatory requirements.
  • Interpret benefit plan rules and company policies to evaluate employee eligibility, qualifying life events, enrollment changes, and benefit issues; determine next steps and escalate complex matters when needed.
  • Maintain accurate employee, payroll, benefits, leave, and HRIS records while protecting sensitive and confidential information.
  • Lead key components of annual open enrollment, including communications, system updates, employee education, vendor coordination, and follow-up support.
  • Administer and coordinate employee leave programs, including FMLA, PFML, disability, parental leave, and company-specific leave policies.
  • Partner with HR, managers, employees, and third-party vendors to ensure timely, accurate, and compliant leave processing and return-to-work coordination.
  • Collaborate with vendors, brokers, carriers, and internal stakeholders to resolve employee questions, reconcile information, and support high-quality service delivery.
  • Administer employee separation paperwork, related processes, and conduct exit interviews with employees.
  • Analyze and process benefit invoices, enrollment records, payroll deductions, carrier files, and vendor reports to identify discrepancies, independently resolve issues, and recommend corrective action.
  • Assist in the coordination of company-wide engagement events.

Payroll Administration

  • Analyze employee changes, wage calculations, deductions, leave impacts, timekeeping issues, and payroll reports; independently identify discrepancies and make corrections before payroll finalization.
  • Investigate and resolve complex payroll-related issues involving employee status changes, deductions, leave payments, benefit continuation, retroactive adjustments, and compliance-sensitive wage-and-hour considerations.
  • Partner with Accounting to resolve payroll discrepancies and conduct regular audits and reconciliations, ensuring accuracy and compliance.
  • Coordinate with Accounting on year-end payroll processes, including W-2 review and distribution.

Compliance & Process Improvement

  • Lead assigned projects related to benefits, payroll coordination, leave administration, HRIS optimization, compliance reporting, vendor transitions, open enrollment, and process documentation.
  • Design, update, and maintain standard operating procedures, employee-facing guidance, and internal workflows for benefits, leave, payroll coordination, and other related HR operations activities.
  • Evaluate recurring issues and recommend changes to policies, procedures, vendor processes, or system improvements to reduce compliance risk, improve employee experience, and strengthen operational efficiency.
  • Ensure compliance with applicable federal, state, and local regulations, labor laws, and internal policies; identify compliance risks or process gaps and recommend corrective action to HR leadership.
  • Respond to Department of Labor, state unemployment, employment verification, and other required reporting or information requests, as appropriate. 
  • Partner with internal and external stakeholders to support audits, benefit renewals, software integrations, and process enhancements.
  • Manage sensitive information with a high level of confidentiality and professionalism.
  • Perform other duties as assigned.

Requirements

What You Bring

  • 5+ years of progressively responsible experience in benefits, leave administration, and payroll coordination, preferably in a multi-state environment.
  • Bachelor's degree in Human Resources, Business Administration, Accounting, or a related field preferred; or equivalent combination of education and experience.
  • Demonstrated ability to interpret and apply benefit plan documents, leave laws, wage-and-hour requirements, payroll and timekeeping procedures, and HR policies to varied employee situations.
  • Experience independently resolving benefits, leave, payroll, HRIS, and employee-service issues using sound judgment, discretion, and confidentiality.
  • Ability to analyze data, identify discrepancies or compliance risks, recommend corrective action, and communicate practical solutions to employees, managers, vendors, and HR leadership.
  • Familiarity with federal, state, and local employment, payroll, wage-and-hour, leave, and benefits compliance requirements.
  • Experience using HRIS, payroll, benefits, or timekeeping systems; Paylocity and/or Deltek Vantagepoint experience is a plus.
  • Strong attention to detail, accuracy, follow-through, and ability to work with time-sensitive and confidential information.
  • Excellent communication and customer service skills with the ability to explain complex benefits, payroll, and leave information clearly and professionally.
  • Deliver high-quality, accurate work using sound judgment, critical thinking, and strong organizational skills with the ability to manage multiple priorities, meet deadlines, and adapt in a fast-paced environment.
  • Proficiency with Microsoft Office, including Excel, Word, Outlook, and Teams.
  • Demonstrated commitment to building trusting relationships through collaboration, integrity, respect, confidentiality, and continuous improvement.
  • Curious and improvement-minded, with a willingness to embrace feedback and seek better solutions for employees and internal partners.

Why You Will Love Working at Fisher

  • You are empowered to achieve exceptional results through collaboration and ownership. 
  • Your voice matters in our inclusive culture, where accessible leadership welcomes ideas and feedback. 
  • Your growth is our priority, supported by clear career paths, career discussions, and tuition assistance.
  • You thrive in a culture that keeps work fun and fosters a relaxed, easy-going atmosphere.
  • Your journey is supported by a collaborative environment that promotes mentorship and ongoing learning. 
  • Your success is supported by a flexible work environment that helps you thrive professionally and personally.

What We Offer

Your Impact Matters, Your Career Thrives. In the Benefits & Payroll Administrator role, you will help employees feel informed and supported while strengthening the processes that keep HR, benefits, leave, and payroll operations running smoothly. We offer competitive salaries and benefits, including:

  • Medical, Dental & Vision Insurance
  • 401(k) Plan
  • Company-paid Life and Disability Insurance
  • Hybrid Remote Work Schedule
  • Generous PTO and Paid Holidays
  • Work-Life Balance
  • Shareholders Program
  • Professional Development Opportunities and Reimbursement
  • Supplemental voluntary benefits designed to support total well-being and financial security
  • Opportunities to engage with employee groups focused on community, inclusion, and employee voice

Salary Range: Annualized salary of $65,000-$78,000

Actual compensation may vary based on relevant experience, qualifications, education, and other job-related factors. The salary range is not necessarily reflective of actual total compensation that may be earned, nor does it promise any specific pay for any specific employee. The salary range excludes the monetary value of benefits.


Equal Employment Opportunity Statement
Fisher Associates is committed to fostering a diverse and inclusive workplace where all individuals are respected, valued, and empowered to thrive. We do not discriminate on the basis of any protected status under federal, state, or local law.


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