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Bioinformatics Programmer Jobs (NOW HIRING)

BiomeSense

Senior Bioinformatics Engineer

Chicago, IL · On-site

$125K - $200K/yr

Senior Bioinformatics Engineer Compensation : $125K - $200K base + 0.25% - 0.5% equity About BiomeSense BiomeSense is a pioneering life sciences startup focused on harnessing the power of the gut ...

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Bioinformatics Programmer information

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$70.5K

$142.8K

$254K

How much do bioinformatics programmer jobs pay per year?

As of Jun 14, 2026, the average yearly pay for bioinformatics programmer in the United States is $142,829.00, according to ZipRecruiter salary data. Most workers in this role earn between $96,500.00 and $175,000.00 per year, depending on experience, location, and employer.

What is a Bioinformatics Programmer job?

A Bioinformatics Programmer is a professional who develops and maintains software tools to analyze biological data, such as DNA sequences, protein structures, and genomic variations. They work at the intersection of computer science and biology, using programming languages like Python, R, and Java to process and visualize complex biological datasets. Their role is crucial in fields like genomics, drug discovery, and biomedical research, where they help automate data analysis and support scientific investigations.

What is a bioinformatics programmer?

A bioinformatics programmer is a professional who develops software and algorithms to analyze biological data, such as genetic sequences and molecular structures. They often use programming languages like Python or R and work with bioinformatics tools to support research and healthcare applications.

What are the key skills and qualifications needed to thrive in the Bioinformatics Programmer position, and why are they important?

To thrive as a Bioinformatics Programmer, you need strong programming skills (often in Python, R, or Java), a solid background in biology or life sciences, and experience working with large-scale biological data. Commonly used tools and systems include bioinformatics software like BLAST, Bioconductor, cloud computing platforms, and version control systems such as Git, and certifications in relevant domains can be advantageous. Critical thinking, problem-solving, and effective communication are essential soft skills for integrating research findings and collaborating with interdisciplinary teams. These skills ensure you can develop robust, accurate computational solutions that drive advances in biological research and healthcare applications.

What is the salary of bioinformatic software developer?

The salary of a bioinformatics programmer typically ranges from $70,000 to $110,000 annually, depending on experience, education, and location. Entry-level positions may start lower, while experienced developers with specialized skills in programming languages like Python or R can earn higher salaries.

What does a typical day look like for a Bioinformatics Programmer?

A typical day for a Bioinformatics Programmer involves writing and optimizing code to analyze large datasets, commonly derived from genomics, proteomics, or clinical studies. You'll spend time collaborating with biologists, statisticians, and other programmers to design experiments, validate results, and interpret findings. Most roles also include maintaining data pipelines, troubleshooting software issues, and staying updated with the latest bioinformatics tools and research. The work environment often blends independent coding with regular team meetings and project updates, offering both technical and interdisciplinary challenges. This dynamic workflow makes the role both intellectually stimulating and impactful in advancing scientific discoveries.

Is AI going to replace bioinformatics?

AI is a tool that enhances bioinformatics work by automating data analysis and pattern recognition, but it is unlikely to fully replace bioinformatics programmers. These professionals are essential for developing algorithms, interpreting results, and maintaining computational pipelines, often using programming languages like Python or R. AI complements their skills rather than replacing the need for human expertise in the field.

Is bioinformatics currently in demand?

Bioinformatics programmers are in high demand due to the growth of genomic research, personalized medicine, and data analysis in healthcare and biotech industries. Skills in programming languages like Python and R, along with knowledge of biological data, are highly valued in this field.
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Bioinformatics Programmer jobs near you
Infographic showing various Bioinformatics Programmer job openings in the United States as of June 2026, with employment types broken down into 83% Full Time, 13% Part Time, 1% Temporary, 1% Contract, and 2% Nights. Highlights an 80% Physical, 2% Hybrid, and 18% Remote job distribution, with an average salary of $142,829 per year, or $68.7 per hour.
Customer Success Engineer, Bioinformatics

Customer Success Engineer, Bioinformatics

Watershed Informatics

Cambridge, MA • On-site

Full-time

Posted 28 days ago

Job description

About Watershed
Our vision is to become the leading biocomputing platform. The future of biology is in big data analysis, and we are on a mission to accelerate digital drug discovery with the Watershed platform. Watershed enables scientists to conduct all essential analysis - from lab data to plot - with a single software platform.
We have attracted some of the best bioinformatics, engineering, and commercial talent, and we are growing! Join a team that's intellectually curious with a bias for action, headquartered in Cambridge, Massachusetts, composed of people who have come together to enable outcomes while empowering the research of all those committed to changing lives - all while bringing transformational change to a $40 billion industry.
About the Role
Customer Success Engineers work at the intersection of software engineering, bioinformatics, and customer success to understand and fulfill customer support needs.
Customers choose Watershed to analyze and share large biological data sources in flexible, powerful computing environments. Customers will engage you as a first escalation point - you will draw on a knowledge of Linux systems, software engineering, and bioinformatics to unpack and resolve requests.
You will track down support requests across the platform, partnering with our Product Manager and Head of Operations. Expect variety in the complexity and kinds of technology and bioinformatics challenges you face. As you troubleshoot recurring issues, you will document and elevate common requests and fixes to improve future support.
Responsibilities
  • Develop an intimate understanding of how customers use the Watershed platform.
  • Analyze and share data on customer usage, activity, and trends. Suggest upsell opportunities and advise on account-specific insights.
  • Triage, manage, and resolve incoming customer support requests. Requests will vary in complexity from Level 1 support to interrelated Linux, software, and bioinformatics issues.
  • Establish and uphold company support standards. Create resolution metrics and expand support programs as needed.
  • Create & manage a system for documenting solutions and workarounds for recurring requests so team members can resolve similar issues quickly.
  • Write platform guides and FAQs to support new feature rollouts. Develop case studies detailing tailored customer solutions.
  • Directly report to the Head of Operations & CEO. Escalate key support insights (i.e., 'buggy functions' or common user misunderstandings).
  • Ensure an excellent user experience on the Watershed platform

Qualifications
  • 1-3 years of professional experience supporting technical and non-technical customers as a bioinformatician. Experience working in a bioinformatics consultancy is strongly preferred
  • A working understanding of Linux commands, system troubleshooting, and Docker.
  • Proficiency with any one of Bash, Python, or R. Familiarity with all three is preferred.
  • Familiarity with bioinformatics, computational biology, or a Masters in Bioinformatics is preferred

Apply