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Bioinformatics Developer Jobs (NOW HIRING)

Bioinformatics Pipeline Test Engineer Domain EXP : (Healthcare Domain) Experience: 2+ Years of exp Location: San Diego CA "Onsite client office" Duration: 6 Months JD in brief: For these candidates ...

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How much do bioinformatics developer jobs pay per hour?

As of Aug 15, 2026, the average hourly pay for bioinformatics developer in the United States is $42.79, according to ZipRecruiter salary data. Most workers in this role earn between $42.55 and $43.03 per hour, depending on experience, location, and employer.

What are some common challenges faced by bioinformatics developers when integrating new data sources into existing pipelines?

Bioinformatics Developers often encounter challenges when integrating new data sources, such as ensuring compatibility with existing pipeline formats, managing diverse data types, and maintaining data quality and integrity. Adapting to rapidly evolving data standards and accommodating large-scale datasets can also be complex, requiring frequent updates and optimization of scripts or software. Collaboration with biologists and data scientists is essential to accurately interpret data requirements and troubleshoot issues, making communication skills and adaptability key in this role.

What is a bioinformatics developer?

A Bioinformatics Developer is a professional who combines expertise in biology, computer science, and mathematics to develop software tools and algorithms for analyzing biological data. They often work with genomic, proteomic, or other molecular data to help researchers interpret complex biological information. These developers play a key role in advancing research in areas such as genomics, drug discovery, and personalized medicine by creating efficient computational solutions to process and visualize large datasets.

What are the key skills and qualifications needed to thrive as a bioinformatics developer?

To thrive as a Bioinformatics Developer, you need a strong background in biology, computer science, and mathematics, often supported by a degree in bioinformatics, computer science, or a related field. Proficiency with programming languages (such as Python, R, or Java), bioinformatics tools (like BLAST, GATK), and experience with databases and cloud computing platforms are typically required. Strong analytical thinking, problem-solving abilities, and effective communication skills help translate complex biological data into actionable insights. These skills and qualities are essential for developing robust computational solutions that advance research and innovation in life sciences.
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What states have the most Bioinformatics Developer jobs?

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Infographic showing various Bioinformatics Developer job openings in the United States as of August 2026, with employment types broken down into 80% Full Time, 3% Part Time, and 17% Contract. Highlights an 80% Physical, 6% Hybrid, and 14% Remote job distribution, with an average salary of $89,000 per year, or $42.8 per hour.

Bioinformatics Systems Integration Lead Engineer

GeneDx, Inc

Gaithersburg, MD • On-site

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Re-posted 12 days ago


GeneDx rating

9.3

Company rating: 9.3 out of 10

Based on 5 frontline employees who took The Breakroom Quiz

4th of 120 rated laboratories


Job description

Company Description
GeneDx is a rapidly growing CAP and CLIA certified diagnostic genetic testing laboratory for molecular genetics. Our historic mission has been to make clinical diagnostic testing available for people with genetic conditions and their families. We apply cutting edge technologies that provide a wide array of molecular genetic diagnostic tests, including whole exome sequencing and next generation sequencing panels. To learn more about GeneDx, please visit our website at www.genedx.com.
Job Description
GeneDx is seeking a Lead Engineer - Bioinformatics Systems Integration (FT, 40 hours) to work at our Gaithersburg, MD location, Monday through Friday, 8:30 a.m. to 5:00 p.m.
Role: The Lead Engineer - Bioinformatics Systems Integration will be responsible for the deployment, integration, and support of bioinformatics applications for genomic testing operations across GenPath and GeneDx. This position will also be responsible for optimization and modernization of existing systems and processes. He or she will additionally serve as the liaison between the GenPath genomics production laboratory and the assay development team at GeneDx.
Essential Duties:
  • Works closely with the assay development, clinical, wet lab, and IT teams to bring new assays into production
  • Gathers requirements, designs high-level workflows, anticipates business needs, and estimates timelines for GenPath bioinformatics projects
  • Creates and improves existing testing and deployment frameworks for bioinformatics software development
  • Optimizes existing systems (pipelines, databased, etc.) to improve scalability and maintainability
  • Contributes to the development of software for new assay implementation
  • Establishes and implements policies for bioinformatics software validations and releases and other related activities
  • Mentors jurior developers in best coding practices and general career development
  • Supervises GenPath laboratory informatics software engineers supporting and transitioning from legacy systems (Filemaker, MS Access)
  • Supports LIS system development and integration at GenPath; LIS development is performed by a third party
  • Travels up to 10-20% (maximum 2 days every other week) to GenPath at BioReference Laboratories in Elmwood Park, NJ

Qualifications
Qualifications:
  • BS or MS in Bioinformatics, Computer Science, or a related field
  • 10+ years professional software development experience
  • 5+ years leadership experience
  • 5+ years experience in genomics/bioinformatics software development
  • Proficiency in at least one major scripting language (Perl, Python)
  • Proficiency in relational database engineering (Postgres, MySQL, etc.)
  • Proficiency in Linux shell
  • Proficiency with Git version control or another modern version control system
  • Experience with HPC or cloud computing (Slurm, AWS, SGE, etc.)
  • Broad knowledge of modern genomic assay technologies and data (NGS, aCGH, etc.)

Additional Information
All your information will be kept confidential according to EEO guidelines.
Benefits include:
  • Paid Time Off (vacation, sick, personal, holiday, jury duty, bereavement leave)
  • Health, dental, vision, life insurance, LT/ST disability plans
  • Flexible Spending Account (FSA)
  • Health Savings Account (HSA)
  • 401K retirement savings plan with a 4% company match and immediate vesting
  • Tuition Assistance
  • Employee Discounts (cell phone service, movie tickets, etc.)
  • Regular performance appraisals
  • Many promotions from within

Business casual, dog-friendly work environment

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