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Automation Engineer Ii Jobs (NOW HIRING)

Abbott Laboratories

$61 - $123/hr

Manufacturing Automation Engineer II Working at Abbott At Abbott, you can do work that matters, grow, and learn, care for yourself and your family, be your true self, and live a full life. You'll ...

New

Baylor Genetics

Automation Engineer II

Houston, TX · On-site

... 2+ years of relevant experience, or * MS in Engineering, Computer Science, Biotechnology ... Experience integrating automation platforms with LIMS, databases, or other laboratory software ...

CRB

Automation Engineer II

Denver, CO

As an Automation, Instrumentation and Controls (AIC) Engineer II , you will play a vital role in designing and implementing high-performance automation systems that support manufacturing processes ...

Abbott

Manufacturing Automation Engineer II

Scarborough, ME · On-site

$89K - $115K/yr

Manufacturing Automation Engineer II Working at Abbott At Abbott, you can do work that matters, grow, and learn, care for yourself and your family, be your true self, and live a full life. You'll ...

CRB

Automation Engineer II

Denver, CO · On-site

As an Automation, Instrumentation and Controls (AIC) Engineer II , you will play a vital role in designing and implementing high-performance automation systems that support manufacturing processes ...

CRB

Automation Engineer II

Denver, CO · On-site

As an Automation, Instrumentation and Controls (AIC) Engineer II , you will play a vital role in designing and implementing high-performance automation systems that support manufacturing processes ...

Aptar Group

Automation Engineer II

Auburn, AL · On-site

Automation Engineer II will be primarily engaged in the development, implementation, and modification activities of the plant vision systems, controls, motion, and communications systems. Duties ...

Abbott

Manufacturing Automation Engineer II

Scarborough, ME · On-site

$89K - $115K/yr

Manufacturing Automation Engineer II Working at Abbott At Abbott, you can do work that matters, grow, and learn, care for yourself and your family, be your true self, and live a full life. You'll ...

Biogen

NC · On-site

$77K - $100K/yr

About This Role The Automation Engineer II/III provides 24/7 process controls/automation technical site support to the Biogen 900 Davis drive, NC manufacturing site. In addition, this role manages ...

Repligen

Automation Engineer II

Bridgewater, NJ · On-site

The Service Automation Controls Engineer is responsible for supporting, troubleshooting, and improving automation control solutions used in biopharmaceutical manufacturing and laboratory environments.

Merck & Co.

Automation Engineer II

Bridgewater, MA · On-site

$111 - $150/hr

The Service Automation Controls Engineer is responsible for supporting, troubleshooting, and improving automation control solutions used in biopharmaceutical manufacturing and laboratory environments.

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All JobsAutomation Engineer Ii Jobs

Automation Engineer Ii information

See salary details

$37K

$107.1K

$163K

How much do automation engineer ii jobs pay per year?

As of Aug 23, 2026, the average yearly pay for automation engineer ii in the United States is $107,126.00, according to ZipRecruiter salary data. Most workers in this role earn between $86,500.00 and $123,500.00 per year, depending on experience, location, and employer.

What does an Automation Engineer II do?

An Automation Engineer II is responsible for designing, developing, and maintaining automated systems and processes within a company. They work on improving efficiency, reliability, and safety by automating repetitive or complex tasks, often using software, robotics, or control systems. The 'II' typically indicates a mid-level role, meaning they have some experience and may mentor junior engineers or handle more complex projects. Their work spans various industries, including manufacturing, IT, and energy.

What are the key skills and qualifications needed to thrive as an Automation Engineer II?

To thrive as an Automation Engineer II, you need a solid understanding of automation technologies, programming (such as Python, PLC, or SCADA), and a relevant engineering degree. Familiarity with industrial control systems, automation software (like Rockwell or Siemens), and certifications such as ISA or Six Sigma are commonly required. Strong problem-solving abilities, attention to detail, and effective communication skills help you excel in designing and troubleshooting complex systems. These competencies ensure reliable automation solutions, increased productivity, and effective teamwork in industrial environments.

What are some common challenges Automation Engineer II professionals face when implementing new automation solutions?

Automation Engineer II professionals often encounter challenges such as integrating new automation technologies with legacy systems, ensuring minimal disruption to production processes, and maintaining compliance with industry standards. Balancing the need for innovation with budget constraints and tight project deadlines can also be demanding. Additionally, effective collaboration with cross-functional teams—such as IT, production, and quality assurance—is essential to address technical issues and ensure successful deployment of automation solutions.

What is the difference between Automation Engineer Ii vs Automation Engineer I?

AspectAutomation Engineer IAutomation Engineer II
Required CredentialsBachelor's in Engineering or related field; some certificationsBachelor's or higher; often holds certifications like ISTQB or similar
Work EnvironmentEntry-level projects, supervised tasks, basic automationMore complex projects, independent work, troubleshooting
Employer & Industry UsageManufacturing, software testing, industrial automationManufacturing, software, industrial automation, more responsibility

The main difference between Automation Engineer I and II lies in experience and complexity of tasks. Automation Engineer II typically handles more advanced projects, requires greater independence, and may hold additional certifications. Both roles are common in manufacturing and software industries, but the II level involves a higher level of expertise and responsibility.

More about Automation Engineer Ii jobs

What states have the most Automation Engineer Ii jobs?

States with the most job openings for Automation Engineer Ii jobs include:

What job categories do people searching Automation Engineer Ii jobs look for?

The top searched job categories for Automation Engineer Ii jobs are:

Automation Engineer Ii jobs near you
Infographic showing various Automation Engineer Ii job openings in the United States as of August 2026, with employment types broken down into 94% Full Time, 2% Part Time, and 4% Contract. Highlights an 85% Physical, 6% Hybrid, and 9% Remote job distribution, with an average salary of $107,126 per year, or $51.5 per hour.

Bioprocess/Automation Engineer II

Alamar Biosciences

Fremont, CA • On-site

Full-time

Re-posted 29 days ago

Job description

Position Summary

We are seeking a Bioprocess/Automation Engineer II who thrives in hands-on environments, takes ownership of complex systems, and can bridge biology, engineering, and software. This role is central to developing, scaling, and sustaining automated workflows across both R&D and production environments.
Duties and Responsibilities

  • Partner cross-functionally with assay development, automation, manufacturing, and software teams to deliver cohesive system solutions and end-to-end chemical/biological workflows
  • Contribute to R&D of complex automated biological workflows on Alamar's ArgoHT system - a next-generation proteomics platform pushing the boundaries of sensitivity
  • Develop and own automation engineering projects on liquid handling platforms, from concept through development to release and sustaining (Hamilton, OpenTron, Bravo or similar)
  • Develop, own, and maintain automation/process code with an emphasis on modularity, maintainability, and traceability (Python, C# or similar)
  • Transfer developed processes to both R&D teams and manufacturing/production teams, with accompanying documentation and datasets (feasibility/concept data, V&V runs, troubleshooting documentation, SOPs)
  • Design and run experiments utilizing modern biological assays/automation (NGS, PCR/qPCR, proteomics, immunoassays, or similar)

Qualifications

  • BS/MS (or higher) in Engineering (Chemical, Bio, Electrical, Mechanical, or related) with 4+ years of relevant experience, or equivalent practical experience
  • Demonstrated experience balancing exploratory R&D work on novel platforms with ownership of established workflows on third-party liquid handlers
  • Experience in scripting (Python, C#, Java...) - proficiency with the fundamentals of at least one core language, with an attitude of continuous improvement and a willingness to take on additional challenges
  • Proven ability to debug complex systems spanning fluidics, robotics, software, and assay chemistry
  • Experience with liquid handling automation platforms (Hamilton STAR preferred; Tecan, OpenTron, Bravo, or similar also relevant)
  • Experience developing or supporting high-throughput automated workflows in biotech or diagnostics settings
  • Strong technical documentation skills (experimental designs, lab notebooks, data analysis, SOPs, V&V documents and reports)

The base salary range for this full-time position is $130,000 - $150,000 + bonus + equity + benefits. Our salary ranges are determined by work location, job-related skills, experience, and relevant education or training. The ranges displayed on each job posting reflect the minimum and maximum target for new hire salaries but are subject to change if the leveling of the role is adjusted. Your recruiter can share more about the specific salary range during the hiring process. 

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