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Upstream Fermentation Manager Jobs (NOW HIRING)

Senior Proccess Engineer

Omaha, NE · On-site

$99K - $128K/yr

... managing technical collaborations with external engineering partners and CROs to drive the ... Collaborate closely with R&D (strain design and fermentation) to integrate upstream, downstream ...

Head Brewer Upstream Brewing Company Upstream Brewing Company is seeking an experienced, passionate ... Monitor fermentation, carbonation, packaging, and draft quality * Maintain accurate brewing logs ...

Shift Supervisor

Maple Grove, MN · On-site

$95K - $115K/yr

Operations Manager Compensation: $95,000 - $115,000 / year Description The Shift Supervisor will ... with emerging fermentation technologies the ability to demonstrate upstream and downstream ...

Showing results 21-40

Upstream Fermentation Manager information

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$24.5K

$59.5K

$116K

How much do upstream fermentation manager jobs pay per year?

As of Sep 10, 2026, the average yearly pay for upstream fermentation manager in the United States is $59,525.00, according to ZipRecruiter salary data. Most workers in this role earn between $42,000.00 and $68,500.00 per year, depending on experience, location, and employer.

What does an upstream fermentation manager do?

An Upstream Fermentation Manager oversees the initial stages of bioprocessing, focusing on the cultivation of microorganisms or cells to produce desired products such as pharmaceuticals, enzymes, or biofuels. They are responsible for managing fermentation operations, optimizing growth conditions, ensuring quality control, and supervising a team of technicians or scientists. This role involves troubleshooting process issues, maintaining compliance with regulatory standards, and collaborating with other departments to achieve production goals.

What are the key skills and qualifications needed to thrive as an upstream fermentation manager?

To thrive as an Upstream Fermentation Manager, you need a strong background in microbiology, biochemical engineering, or a related field, often supported by a relevant advanced degree and experience in fermentation processes. Familiarity with bioreactors, process control systems, and data analysis software, as well as certifications in Good Manufacturing Practice (GMP), are typically required. Leadership, problem-solving, and effective communication are critical soft skills for managing teams and troubleshooting process issues. These skills and qualifications are vital to ensure efficient, high-yield fermentation operations and regulatory compliance in biopharmaceutical or industrial biotechnology environments.

What are some common challenges faced by an upstream fermentation manager and how can they be addressed?

Upstream Fermentation Managers often face challenges such as optimizing fermentation conditions to maximize yield, ensuring consistent batch-to-batch performance, and troubleshooting equipment malfunctions or contamination issues. Effective collaboration with process engineers, quality assurance teams, and downstream processing groups is crucial to quickly resolve issues and maintain production targets. Staying current with advancements in fermentation technology and implementing robust standard operating procedures can help address these challenges and improve overall process efficiency.

What is the difference between Upstream Fermentation Manager vs Fermentation Supervisor?

AspectUpstream Fermentation ManagerFermentation Supervisor
ResponsibilitiesOversees entire fermentation process, manages teams, develops protocolsSupervises daily fermentation operations, monitors equipment and quality
CredentialsBachelor's degree in microbiology, biochemistry, or related field; experience in fermentationAssociate's or bachelor's degree; hands-on fermentation experience
Work EnvironmentLaboratory and production facilities, managerial settingProduction floor, laboratory, and shift-based work
Industry UsageCommon in biotech, pharmaceuticals, and large-scale fermentation facilitiesTypically found in manufacturing plants and smaller fermentation operations

The Upstream Fermentation Manager generally has broader responsibilities, including team management and protocol development, while the Fermentation Supervisor focuses on daily operational oversight. Both roles require fermentation knowledge, but the manager position often demands more experience and leadership skills.

What are popular job titles related to Upstream Fermentation Manager jobs?

For Upstream Fermentation Manager jobs, the most frequently searched job titles are:

Infographic showing various Upstream Fermentation Manager job openings in the United States as of September 2026, with employment types broken down into 87% Full Time, 12% Part Time, and 1% Contract. Highlights an 86% Physical, 2% Hybrid, and 12% Remote job distribution, with an average salary of $59,525 per year, or $28.6 per hour.

Manufacturing Manager, Bioprocessing

Durham, NC • On-site

Full-time

Posted 23 days ago


Key responsibilities

  • Oversee upstream fermentation processes and downstream purification operations including chromatography, tangential flow filtration (TFF), and buffer preparation.

  • Coordinate production activities across manufacturing, quality, operations, and process development functions to meet business objectives.

  • Train, develop, supervise manufacturing personnel.


Job description

Donaldson is committed to solving the world's most complex filtration challenges. Together, we make cool things. As an established technology and innovation leader, we are continuously evolving to meet the filtration needs of our changing world. Join a culture of collaboration and innovation that matters and a chance to learn, effect change, and make meaningful contributions at work and in communities.

Position Summary:

We are seeking a Manufacturing Manager, Bioprocessing for Isolere Bio, a division of Donaldson and home to the proprietary IsoTag technology-a bioprocessing purification solution that delivers better-than-affinity performance without the chromatography column. The company offers a growing portfolio of purification solutions for a wide range of biologics and other viral particles. This high-visibility role will lead and manage establishing production of IsoTag reagents as well as supporting efforts to scale production. Qualified candidates must be able to work an on-site schedule at our Durham, NC office/facility.

Role Responsibilities:

  • Oversee upstream fermentation processes and downstream purification operations including chromatography, tangential flow filtration (TFF), and buffer preparation.

  • Coordinate production activities across manufacturing, quality, operations, and process development functions to meet business objectives

  • Train, develop, supervise manufacturing personnel.

  • Draft, review and approve batch records, deviations, investigations, change controls, and corrective actions.

  • Identify and implement improvements to increase operational efficiency, product quality, and manufacturing capacity.

  • Support technology transfer and process scale-up activities from development to commercial manufacturing by participating in SOP and batch record generation, documentation and training requirements, and other needs for tech transfer.

  • Ensure proper operation, maintenance, calibration, and qualification of manufacturing equipment.

  • Support commissioning and qualification of new manufacturing equipment and process technologies, as well as leading efforts for expansion of capabilities and equipment.

  • Foster a culture of accountability, safety, quality, and continuous improvement.

Minimum Qualifications:

  • Bachelors degree in science, engineering, manufacturing operations, or related field.

  • 5+ years of Bioprocessing experience in biopharmaceutical, industrial biotechnology, or related manufacturing environments.

  • Experience with upstream and/or downstream bioprocessing operations or related bioprocessing manufacturing operations.

Preferred Qualifications:

  • 1+ years of leadership or supervisory experience within a manufacturing setting.

  • Experience with fermentation, chromatography, and/or tangential flow filtration (TFF).

  • Strong understanding of process control, batch manufacturing, and production scheduling.

  • Strong organizational, communication, and leadership skills.

  • Experience in GMP-regulated manufacturing environments.

  • Experience with scale-up, technology transfer, and process validation activities.

  • Knowledge of Lean Manufacturing, Six Sigma, or Operational Excellence methodologies.

  • Experience with contract manufacturing or customer-facing production programs.

Relocation: This position is not eligible for relocation assistance.

Immigration Sponsorship Not Available:

  • Applicants for this position must be currently and legally authorized to work in the United States without the need for current or future sponsorship (e.g., H-1B, J-1, F-1, CPT, OPT, etc.).

  • Donaldson will not offer immigration sponsorship or assume sponsorship of an employment visa for this position.

  • International relocation or remote work arrangements outside of the U.S. will not be considered.

Equal Opportunity Employer, including Disability and Veterans

Employment opportunities for positions in the United States may require use of information which is subject to the export control regulations of the United States. Hiring decisions for such positions are required by law to be made in compliance with these regulations. Applicants for employment opportunities in other countries must be able to meet the comparable export control requirements of that country and of the United States.

Donaldson Company has been made aware that there are several recruiting scams that are targeting job seekers. These scams have attempted to solicit money for job applications and/or collect confidential information, Donaldson will never solicit money during the application or recruiting process. Donaldson only accepts online applications through our Careers | Donaldson Company, Inc. website and any communication from a Donaldson recruiter would be sent using a donaldson.com email address. If you have any questions about the legitimacy of an employment opportunity, please reach out to talentacquisition@donaldson.com to verify that the communication is from Donaldson.

Our policy is to provide equal employment opportunities to all qualified persons without regard to race, gender, color, disability, national origin, age, religion, union affiliation, sexual orientation, veteran status, citizenship, gender identity and/or expression, or other status protected by law.