ZipRecruiter

Log In

1

Trainee Bioinformatics Software Engineer Jobs (NOW HIRING)

Baylor Genetics

Sr HPC Engineer

Houston, TX · On-site

$96K - $132K/yr

MS with extensive industry experience may be considered. • 8+ years' experience in bioinformatics software engineering, computational genomics, or related field. • 4+ years' experience leading or ...

Ariadne

NCBI Software Developer (C++, Python)

Bethesda, MD · On-site +1

$52.25 - $70.50/hr

Overview Ariadne is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and onsite at the NIH in ...

BCC-NIH

Program Principal Engineer

Bethesda, MD · Hybrid

... NCBI bioinformatics software and information retrieval systems * Work with a diverse group of ... Programming experience in a Linux environment * Proficiency in C++ * Experience with MS SQL server ...

BCC-NIH

Program Principal Engineer

Bethesda, MD · On-site

... NCBI bioinformatics software and information retrieval systems * Work with a diverse group of ... Programming experience in a Linux environment * Proficiency in C++ * Experience with MS SQL server ...

BiomeSense

Senior Bioinformatics Engineer

Chicago, IL · On-site

... software engineering best practices including wireframe design, unit testing, version control, code review, and security and compliance. Qualifications : Required : • B.S. /M.S. /PhD in ...

Axle

Bioinformatics Engineer

Rockville, MD · On-site

They are seeking a Bioinformatics Engineer to join their team supporting major pharmaceutical ... software engineers to integrate pipelines into broader analytical ecosystems • Stay current with ...

ACL Digital

Bioinformatics Engineer

Foster City, CA · On-site

$80/hr

Associate Scientist - Bioinformatics V / Bioinformatics Engineer Location: Foster City, CA Duration ... solid software engineering practices (Git, testing, documentatio n). • Workflow + compute ...

next page

Showing results 1-20

All JobsTrainee Bioinformatics Software Engineer Jobs

Trainee Bioinformatics Software Engineer information

See salary details

$43K

$131.1K

$238.5K

How much do trainee bioinformatics software engineer jobs pay per year?

As of Jun 27, 2026, the average yearly pay for trainee bioinformatics software engineer in the United States is $131,053.00, according to ZipRecruiter salary data. Most workers in this role earn between $96,000.00 and $157,000.00 per year, depending on experience, location, and employer.

What are some common challenges faced by Trainee Bioinformatics Software Engineers when transitioning from academic projects to industry roles?

Trainee Bioinformatics Software Engineers often find the shift from academic to industry settings challenging due to differences in project scope, timelines, and collaborative expectations. In industry, there is a greater emphasis on writing maintainable, well-documented code and following software development best practices, such as version control and code reviews. Additionally, trainees must quickly adapt to working in cross-functional teams that include biologists, data scientists, and senior engineers, requiring strong communication and teamwork skills. Managing competing priorities and meeting strict deadlines can also be a new experience compared to the typically flexible timelines of academic research.

What is a Trainee Bioinformatics Software Engineer?

A Trainee Bioinformatics Software Engineer is an entry-level professional who assists in developing and maintaining software tools used to analyze biological data, such as DNA sequences or protein structures. They typically work under the supervision of experienced bioinformaticians and software engineers, learning to write code, manage databases, and process complex scientific datasets. The role often requires a mix of programming skills and a basic understanding of biology, allowing trainees to bridge the gap between computational and life sciences. As they gain experience, they contribute more significantly to research projects and the development of new bioinformatics applications.

What are the key skills and qualifications needed to thrive as a Trainee Bioinformatics Software Engineer, and why are they important?

To thrive as a Trainee Bioinformatics Software Engineer, you need a strong background in biology, computer science, or a related field, with foundational programming skills in languages like Python or R. Familiarity with bioinformatics tools, databases, and version control systems such as Git is typically required, and coursework or certifications in bioinformatics are advantageous. Analytical thinking, attention to detail, and effective communication are valuable soft skills for collaborating with interdisciplinary teams and interpreting complex data. These competencies enable you to efficiently develop software solutions and contribute to meaningful biological research.

What is the difference between Trainee Bioinformatics Software Engineer vs Junior Bioinformatics Developer?

AspectTrainee Bioinformatics Software EngineerJunior Bioinformatics Developer
Required CredentialsTypically a recent graduate or in early training, with a degree in bioinformatics, computer science, or related fieldsSimilar educational background, often entry-level or with minimal professional experience
Work EnvironmentTraining programs, internships, or entry-level projects within research labs or biotech companiesEntry-level roles in research teams or biotech firms, focusing on developing bioinformatics tools
Employer & Industry UsageUsed by companies and research institutions to train new talent in bioinformatics software developmentCommonly employed in biotech, pharma, and research organizations for initial software development tasks

The main difference is that a Trainee Bioinformatics Software Engineer is in a training or internship phase, focusing on learning and skill development, while a Junior Bioinformatics Developer is an entry-level professional actively contributing to projects. Both roles require similar educational backgrounds but differ in experience level and responsibilities.

More about Trainee Bioinformatics Software Engineer jobs
What cities are hiring for Trainee Bioinformatics Software Engineer jobs? Cities with the most Trainee Bioinformatics Software Engineer job openings:
What are the most commonly searched types of Bioinformatics Software Engineer jobs? The most popular types of Bioinformatics Software Engineer jobs are:
What states have the most Trainee Bioinformatics Software Engineer jobs? States with the most job openings for Trainee Bioinformatics Software Engineer jobs include:
What job categories do people searching Trainee Bioinformatics Software Engineer jobs look for? The top searched job categories for Trainee Bioinformatics Software Engineer jobs are:
Trainee Bioinformatics Software Engineer jobs near you
Infographic showing various Trainee Bioinformatics Software Engineer job openings in the United States as of June 2026, with employment types broken down into 100% Full Time. Highlights an 98% Physical, 1% Hybrid, and 1% Remote job distribution, with an average salary of $131,053 per year, or $63 per hour.
Sr. Bioinformatics Analyst - Full-time - Miami, FL

Sr. Bioinformatics Analyst - Full-time - Miami, FL

University of Miami

Miami, FL

Full-time

Medical, Dental

Posted 2 days ago

University Of Miami rating

7.7

Company rating: 7.7 out of 10

Based on 52 frontline employees who took The Breakroom Quiz

222nd of 541 rated colleges and universities

Job description

Current Employees:

If you are a current Staff, Faculty or Temporary employee at the University of Miami, please click here to log in to Workday to use the internal application process. To learn how to apply for a faculty or staff position, please review this tip sheet.

The Department of Urology has an exciting opportunity for a full-time Senior Bioinformatics Analyst work on-site in Miami.

CORE JOB SUMMARY

The Senior Bioinformatics Analyst works with research staff to extend capabilities in bioinformatics and improve understanding of genetic variation in human health and disease. The Senior Bioinformatics Analyst also assumes responsibility for the development and maintenance of novel bioinformatics methods.

CORE JOB FUNCTIONS

  • Develops and maintains next generation data analysis pipelines.

  • Assists in analysis pipeline and algorithms development and validation.

  • Extracts features of interest from data relating to specific biological questions.

  • Contributes to the development and maintenance of genomic and clinical databases.

  • Performs statistical and integrative data analysis on genomics and clinical data.

  • Supervises team members and other data analysts.

  • Establishes standard operating procedures, documentation, and scripts to generate custom reports.

  • Progresses material for bioinformatics tutorials and training courses.

  • Tests the characterization and integration of diverse third-party bioinformatics algorithms.

  • Adheres to University and unit-level policies and procedures and safeguards University assets.

This list of duties and responsibilities is not intended to be all-inclusive and may be expanded to include other duties or responsibilities as necessary.

CORE QUALIFICATIONS

  • Bachelor's degree in relevant field required

  • Refer to department description for applicable certification requirements

  • Minimum 3 years of relevant experience required

Knowledge, Skills and Abilities:

  • Learning Agility: Ability to learn new procedures, technologies, and protocols, and adapt to changing priorities and work demands.

  • Teamwork: Ability to work collaboratively with others and contribute to a team environment.

  • Technical Proficiency: Skilled in using office software, technology, and relevant computer applications.

  • Communication: Strong and clear written and verbal communication skills for interacting with colleagues and stakeholders.

DEPARTMENT ADDENDUM

Department Specific Functions

The Sharifi Laboratory is seeking a highly motivated Bioinformatics Analyst to support translational and mechanistic studies focused on prostate cancer progression, steroid metabolism, androgen signaling, therapeutic resistance, and biomarker discovery. The successful candidate will work closely with laboratory scientists and clinicians to analyze genomic, transcriptomic, epigenomic, metabolomic, and clinical datasets and contribute to high-impact cancer research.

  • Design, implement, and maintain computational workflows for analysis of high-throughput metabolomics, sequencing and multi-omic datasets.

  • Analyze spatial transcriptomics, proteomic, metabolomic, and clinical data.

  • Integrate molecular and clinical datasets to identify biomarkers associated with treatment response, disease progression, and patient outcomes.

  • Perform statistical analyses and develop reproducible pipelines using modern bioinformatics tools and programming languages.

  • Contribute to studies investigating androgen biosynthesis, steroid metabolism, androgen receptor signaling, and mechanisms of therapeutic resistance in prostate cancer.

  • Support analysis of patient-derived datasets, clinical cohorts, and public cancer genomics resources including TCGA, cBioPortal, GEO, dbGaP, and other consortium datasets.

  • Develop data visualization tools and generate publication-quality figures and reports.

  • Collaborate with laboratory investigators on experimental design, data interpretation, and manuscript preparation.

  • Maintain rigorous standards for reproducible research, version control, documentation, and data management.

  • Assist in preparation of grant applications, progress reports, and scientific presentations.

Department Specific Qualifications

  • Bachelor's degree in relevant field required, M.S. or Ph.D. preferred

  • Demonstrated experience analyzing metabolomics and next-generation sequencing data.

  • Strong programming skills in R and/or Python.

  • Proficiency with bioinformatics software and workflow frameworks.

  • Strong understanding of statistics and experimental design.

  • Ability to work independently and collaboratively within a multidisciplinary research environment.

  • Excellent written and verbal communication skills.

  • Candidates with biochemistry and chemistry background is preferred.

The University of Miami offers competitive salaries and a comprehensive benefits package including medical, dental, tuition remission and more.

UHealth-University of Miami Health System, South Florida's only university-based health system, provides leading-edge patient care powered by the ground breaking research and medical education at the Miller School of Medicine. As an academic medical center, we are proud to serve South Florida, Latin America and the Caribbean. Our physicians represent more than 100 specialties and sub-specialties, and have more than one million patient encounters each year. Our tradition of excellence has earned worldwide recognition for outstanding teaching, research and patient care. We're the challenge you've been looking for.

The University of Miami is an Equal Opportunity Employer. Applicants and employees are protected from discrimination based on certain categories protected by Federal law.

Job Status:

Full time

Employee Type:

Staff

What University Of Miami employees say

Pay

Benefits

Hours and flexibility

Workplace

Get the full story on Breakroom

University of Miami logo

About University of Miami

Sourced by ZipRecruiter

The University of Miami, located in the beautiful Coral Gables, Florida, is a comprehensive, private research institution in the United States. Operating within the higher education industry, the institution offers a multitude of degree programs spanning over 180 majors and program through its 12 colleges. The University was founded in 1925 with the mission to disseminate knowledge, transform lives, and change the world - a mission it has held faithfully to this day. Notably, the University of Miami has gained global recognition for its commitment to research and innovation, with over $324 million in research and sponsored project funding awarded annually.

Industry

Colleges, universities, and professional schools

Company size

10,000+ Employees

Headquarters location

Coral Gables, FL, US

Year founded

1925

View All University of Miami Jobs

Apply