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Trainee Bioinformatics Software Engineer Jobs in Texas

Baylor Genetics

Sr HPC Engineer

Houston, TX · On-site

$96K - $132K/yr

MS with extensive industry experience may be considered. • 8+ years' experience in bioinformatics software engineering, computational genomics, or related field. • 4+ years' experience leading or ...

Vytwo

Bioinformatics Pipeline Test Engineer

Prosper, TX · On-site

Bioinformatics Pipeline Test Engineer Domain EXP : (Healthcare Domain) Experience: 2+ Years of exp ... Aid in translation of user and software requirements into executable software verification and ...

Natera

Senior Software Engineer

Austin, TX · On-site +1

$121K - $160K/yr

The Senior Software Engineer within the Platform group will join a tight-knit, cross-functional ... , bioinformatics, and high-performance computing initiatives. We're seeking an experienced ...

Baylor Genetics

Principal Software Engineer

Houston, TX · On-site

$124K - $166K/yr

... Software Engineer to work ONSITE to serve as a technical leader and architect across our software ... and bioinformatics teams to optimize workflows and enhance operational efficiency • Ensure ...

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Trainee Bioinformatics Software Engineer information

What are some common challenges faced by Trainee Bioinformatics Software Engineers when transitioning from academic projects to industry roles?

Trainee Bioinformatics Software Engineers often find the shift from academic to industry settings challenging due to differences in project scope, timelines, and collaborative expectations. In industry, there is a greater emphasis on writing maintainable, well-documented code and following software development best practices, such as version control and code reviews. Additionally, trainees must quickly adapt to working in cross-functional teams that include biologists, data scientists, and senior engineers, requiring strong communication and teamwork skills. Managing competing priorities and meeting strict deadlines can also be a new experience compared to the typically flexible timelines of academic research.

What is a Trainee Bioinformatics Software Engineer?

A Trainee Bioinformatics Software Engineer is an entry-level professional who assists in developing and maintaining software tools used to analyze biological data, such as DNA sequences or protein structures. They typically work under the supervision of experienced bioinformaticians and software engineers, learning to write code, manage databases, and process complex scientific datasets. The role often requires a mix of programming skills and a basic understanding of biology, allowing trainees to bridge the gap between computational and life sciences. As they gain experience, they contribute more significantly to research projects and the development of new bioinformatics applications.

What are the key skills and qualifications needed to thrive as a Trainee Bioinformatics Software Engineer, and why are they important?

To thrive as a Trainee Bioinformatics Software Engineer, you need a strong background in biology, computer science, or a related field, with foundational programming skills in languages like Python or R. Familiarity with bioinformatics tools, databases, and version control systems such as Git is typically required, and coursework or certifications in bioinformatics are advantageous. Analytical thinking, attention to detail, and effective communication are valuable soft skills for collaborating with interdisciplinary teams and interpreting complex data. These competencies enable you to efficiently develop software solutions and contribute to meaningful biological research.

What is the difference between Trainee Bioinformatics Software Engineer vs Junior Bioinformatics Developer?

AspectTrainee Bioinformatics Software EngineerJunior Bioinformatics Developer
Required CredentialsTypically a recent graduate or in early training, with a degree in bioinformatics, computer science, or related fieldsSimilar educational background, often entry-level or with minimal professional experience
Work EnvironmentTraining programs, internships, or entry-level projects within research labs or biotech companiesEntry-level roles in research teams or biotech firms, focusing on developing bioinformatics tools
Employer & Industry UsageUsed by companies and research institutions to train new talent in bioinformatics software developmentCommonly employed in biotech, pharma, and research organizations for initial software development tasks

The main difference is that a Trainee Bioinformatics Software Engineer is in a training or internship phase, focusing on learning and skill development, while a Junior Bioinformatics Developer is an entry-level professional actively contributing to projects. Both roles require similar educational backgrounds but differ in experience level and responsibilities.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in Texas? The most popular types of Bioinformatics Software Engineer jobs in Texas are:
What are popular job titles related to Trainee Bioinformatics Software Engineer jobs in Texas? For Trainee Bioinformatics Software Engineer jobs in Texas, the most frequently searched job titles are:
What job categories do people searching Trainee Bioinformatics Software Engineer jobs in Texas look for? The top searched job categories for Trainee Bioinformatics Software Engineer jobs in Texas are:
What cities in Texas are hiring for Trainee Bioinformatics Software Engineer jobs? Cities in Texas with the most Trainee Bioinformatics Software Engineer job openings:
Trainee Bioinformatics Software Engineer jobs near you
Infographic showing various Trainee Bioinformatics Software Engineer job openings in Texas as of June 2026, with employment types broken down into 71% Full Time, 19% Part Time, 5% Temporary, and 5% Contract. Highlights an 87% Physical, 5% Hybrid, and 8% Remote job distribution.

Staff Bioinformatics Software Engineer

CooperCompanies

Houston, TX • On-site

Full-time

Medical, Retirement, PTO

Posted 5 days ago

Job description

Job Description
The Cooper Surgical R&D Software team within Cooper Surgical is dedicated to developing and maintaining cutting-edge software solutions. We are expanding our team to provide digital capabilities for the Life Sciences product portfolio. As a Staff Bioinformatics Software Engineer on the CSI Software R&D team, you will lead the charge in the design, development and maintenance, and innovation of digital solutions that underpin the Life Science products, with a focus on high throughput next generation sequencing data and analysis platform that powers CooperSurgical's genetic testing product offerings, along with steering new initiatives and pioneering state-of-the-art software solutions, providing guidance and expertise. This role will report to the Head of Software Development and have a dotted line reporting to the Head of Life Sciences.
As a Staff Bioinformatics Software Engineer on the Cooper Surgical R&D Software Development team, you will assume a technical leadership role in designing, developing, maintaining, enhancing, and supporting internal-facing software products. This position will require a high level of technical expertise, with a focus on designing and delivering advanced Bioinformatics solutions, statistical modeling, and next generation sequencing algorithm and analysis pipelines for detection and interpretation of complex genomic features. You will collaborate closely with a multidisciplinary team of bench scientists with expertise in molecular and cellular biology as well as Operations and Quality teams and be responsible for the evolution of existing offerings and leading the development of new software products and services, while also specializing in key areas.
Responsibilities
Responsibilities:
  • Lead the design and development of new features and enhancements for Cooper Bioinformatics products and applications, as well as new products and initiatives to meet the evolving needs of our business.
  • Play a pivotal role as a Bioinformatics Software Development subject matter expert, demonstrating deep expertise in analyzing and interpreting biological data using statistical and computational techniques.
  • Collaborate with biologists to design experiments and analyze data outcomes
  • Work on algorithm development for sequence analysis, gene prediction, and other applications
  • Drive the evolution of software development practices, including identifying opportunities for automation, efficiency, and innovation.
  • Mentor and guide junior engineers, fostering their growth and development.
  • Collaborate with the team to set the direction of future development within current and future CSI projects, contributing to architectural decisions and technical strategy.

Qualifications
Knowledge, Skills, and Abilities:
  • Extensive experience in NGS algorithms and analysis pipeline development, including data workflows, processing pipelines, and bioinformatics file formats (FASTQ, SAM/BAM, VCF).
  • Strong experience in the design and optimization of targeted NGS panels, genome assemblies, and statistical modeling.
  • Extensive experience in high-level scripting languages used in bioinformatics, such as R or Python, with a proven track record of delivering complex, high-quality software solutions.
  • Extensive experience with the Linux operating system and its terminal commands. Knowledge of Bash scripting is a strong plus.
  • Extensive knowledge of common bioinformatics toolkits, including Bowtie 2, BWA, GATK, SAMtools, and FastQC.
  • Strong understanding of AWS cloud solutions, including S3, RDS, and EC2.
  • Familiarity with pipeline development tools such as Snakemake and Nextflow.
  • Strong experience with Git version control and software development best practices, including writing clean, maintainable code and designing modular, reusable components.
  • Familiarity with unit testing and test-driven development (TDD) methodologies to ensure high code quality and reliability.
  • Familiarity with containerization technologies such as Docker, as well as package management tools like Conda.
  • Knowledge of statistical methods such as Hidden Markov Models, along with a strong foundation in linear algebra, is a strong plus.
  • Familiarity with modern GPU-accelerated frameworks, such as NVIDIA Parabricks, is a strong plus.
  • Outcome-focused mindset with strong process discipline and a commitment to timely project delivery.
  • Strong interpersonal and communication skills, with the ability to collaborate effectively and mentor team members.
  • Strong commitment to continuous learning and staying current with emerging technologies

Work Environment:
  • Occasional domestic and international travel (~ 10%)
  • On-site in Houston, TX

Experience:
  • Minimum of 7 years of relevant experience, with track record of increase in responsibilities and leadership within the software development field.

Education:
  • Minimum bachelor's degree in computer science, bioinformatics, data science, mathematics, statistics or related field.
  • Master's or Ph.D. degree preferred.

As an employee of CooperSurgical, you'll receive an outstanding total compensation plan. As we believe your compensation goes beyond your paycheck, we offer a great compensation package, medical coverage, 401(k), parental leave, fertility benefits, paid time off for vacation, personal, sick and holidays, and multiple other perks and benefits. Please visit us at www.coopersurgical.com to learn more about CooperSurgical and the benefits of becoming a member of our team.
To all agencies: Please, no phone calls or emails to any employee of CooperSurgical about this opening. All resumes submitted by search firms/employment agencies to any employee at CooperSurgical via-email, the internet or in any form and/or method will be deemed the sole property of CooperSurgical, unless such search firms/employment agencies were engaged by CooperSurgical for this position and a valid agreement with CooperSurgical is in place. In the event a candidate who was submitted outside of the CooperSurgical agency engagement process is hired, no fee or payment of any kind will be paid.
We are committed to equal employment opportunity regardless of race, color, ancestry, religion, sex, national origin, sexual orientation, age, citizenship, marital status, disability, gender, gender identity or expression, or veteran status. We are proud to be an equal opportunity workplace. If you are interested in applying and require special assistance or accommodations due to a disability, please contact us at talent.acquisition@coopersurgical.com.

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