... software engineering best practices including wireframe design, unit testing, version control, code review, and security and compliance. Qualifications : Required : • B.S. /M.S. /PhD in ...
... software engineering best practices including wireframe design, unit testing, version control, code review, and security and compliance. Qualifications : Required : • B.S. /M.S. /PhD in ...
Senior Bioinformatics Engineer
Chicago, IL · On-site
$125K - $200K/yr
Senior Bioinformatics Engineer Compensation: $125K - $200K base + 0.25% - 0.5% equity stock options ... Position Help build our MetaBiome platform, a software solution for collecting, curating ...
Quick apply
Senior Bioinformatics Engineer
Chicago, IL · On-site
$125K - $200K/yr
Senior Bioinformatics Engineer Compensation: $125K - $200K base + 0.25% - 0.5% equity stock options ... Position Help build our MetaBiome platform, a software solution for collecting, curating ...
Senior Software Engineer II, Data Products
Chicago, IL · On-site
$126K - $166K/yr
The Role As a Senior Software Engineer II on the Data Products team, you will act as a technical ... bioinformatics scientists, ML and Agent developers to rapidly develop, deploy, and operate their ...
Senior Software Engineer II, Data Products
Chicago, IL · On-site
$126K - $166K/yr
The Role As a Senior Software Engineer II on the Data Products team, you will act as a technical ... bioinformatics scientists, ML and Agent developers to rapidly develop, deploy, and operate their ...
Senior Software Engineer II, Data Products
Chicago, IL · On-site
$126K - $166K/yr
The Role As a Senior Software Engineer II on the Data Products team, you will act as a technical ... bioinformatics scientists, ML and Agent developers to rapidly develop, deploy, and operate their ...
Senior Software Engineer II, Data Products
Chicago, IL · On-site
$126K - $166K/yr
The Role As a Senior Software Engineer II on the Data Products team, you will act as a technical ... bioinformatics scientists, ML and Agent developers to rapidly develop, deploy, and operate their ...
Senior Software Engineer, OS Ecosystem
Chicago, IL · On-site
$110K - $160K/yr
The Role As a Senior Software Engineer on the OS Ecosystem team, you will act as a core technical ... You will play a pivotal role in designing and developing systems that allow bioinformatics ...
Senior Software Engineer, OS Ecosystem
Chicago, IL · On-site
$110K - $160K/yr
The Role As a Senior Software Engineer on the OS Ecosystem team, you will act as a core technical ... You will play a pivotal role in designing and developing systems that allow bioinformatics ...
Senior Software Engineer, OS Ecosystem
$110K - $160K/yr
The Role As a Senior Software Engineer on the OS Ecosystem team, you will act as a core technical ... You will play a pivotal role in designing and developing systems that allow bioinformatics ...
Senior Software Engineer, OS Ecosystem
$110K - $160K/yr
The Role As a Senior Software Engineer on the OS Ecosystem team, you will act as a core technical ... You will play a pivotal role in designing and developing systems that allow bioinformatics ...
Trainee Continuous Improvement/Quality Engineer
Chicago, IL · On-site
$81K - $108K/yr
We are seeking a dynamic Trainee with an engineering background and a focus on Continuous ... High proficiency in Microsoft Office Suite and data analysis software. Benefits: * Comprehensive ...
Quick apply
Trainee Continuous Improvement/Quality Engineer
Chicago, IL · On-site
$81K - $108K/yr
We are seeking a dynamic Trainee with an engineering background and a focus on Continuous ... High proficiency in Microsoft Office Suite and data analysis software. Benefits: * Comprehensive ...
Engineer, Technology II
North Chicago, IL · On-site +1
Information, Software, Data, or Infrastructure. Responsibilities: * Independently design and ... Background in chemistry, biology, bioinformatics, pharmaceutical sciences, or another life sciences ...
Engineer, Technology II
North Chicago, IL · On-site +1
Information, Software, Data, or Infrastructure. Responsibilities: * Independently design and ... Background in chemistry, biology, bioinformatics, pharmaceutical sciences, or another life sciences ...
Engineer, Technology II
North Chicago, IL · On-site +1
Information, Software, Data, or Infrastructure. Responsibilities: * Independently design and ... Background in chemistry, biology, bioinformatics, pharmaceutical sciences, or another life sciences ...
Engineer, Technology II
North Chicago, IL · On-site +1
Information, Software, Data, or Infrastructure. Responsibilities: * Independently design and ... Background in chemistry, biology, bioinformatics, pharmaceutical sciences, or another life sciences ...
Engineer, Technology II
North Chicago, IL · On-site +1
Information, Software, Data, or Infrastructure. Responsibilities: * Independently design and ... Background in chemistry, biology, bioinformatics, pharmaceutical sciences, or another life sciences ...
Quick apply
Engineer, Technology II
North Chicago, IL · On-site +1
Information, Software, Data, or Infrastructure. Responsibilities: * Independently design and ... Background in chemistry, biology, bioinformatics, pharmaceutical sciences, or another life sciences ...
Engineer, Technology II
North Chicago, IL · On-site +1
Information, Software, Data, or Infrastructure. Responsibilities: * Independently design and ... Background in chemistry, biology, bioinformatics, pharmaceutical sciences, or another life sciences ...
Engineer, Technology II
North Chicago, IL · On-site +1
Information, Software, Data, or Infrastructure. Responsibilities: * Independently design and ... Background in chemistry, biology, bioinformatics, pharmaceutical sciences, or another life sciences ...
Engineer, Technology II
North Chicago, IL · On-site
$84K/yr
Information, Software, Data, or Infrastructure. Responsibilities: * Independently design and ... Background in chemistry, biology, bioinformatics, pharmaceutical sciences, or another life sciences ...
Engineer, Technology II
North Chicago, IL · On-site
$84K/yr
Information, Software, Data, or Infrastructure. Responsibilities: * Independently design and ... Background in chemistry, biology, bioinformatics, pharmaceutical sciences, or another life sciences ...
Applications Engineer, Division Production Software Summary Hexagon Manufacturing Intelligence is ... Assess trainee skill levels and adapt course delivery to audiences ranging from shop floor ...
Applications Engineer, Division Production Software Summary Hexagon Manufacturing Intelligence is ... Assess trainee skill levels and adapt course delivery to audiences ranging from shop floor ...
Trainee Mechanical and/or Industrial Engineering
Chicago, IL · On-site
$72K - $97K/yr
As a Trainee in Mechanical /Industrial Engineer with a specialization in Lean Manufacturing ... Proficiency in Microsoft Office Suite and data analysis software. Benefits: * Comprehensive ...
Quick apply
Trainee Mechanical and/or Industrial Engineering
Chicago, IL · On-site
$72K - $97K/yr
As a Trainee in Mechanical /Industrial Engineer with a specialization in Lean Manufacturing ... Proficiency in Microsoft Office Suite and data analysis software. Benefits: * Comprehensive ...
Computational Biologist
$130K - $163K/yr
Minimum 2 years of experience in developing bioinformatic methods, analysis pipelines, or software tools for biological data using appropriate programming language. * Minimum of 1 year of experience ...
Computational Biologist
$130K - $163K/yr
Minimum 2 years of experience in developing bioinformatic methods, analysis pipelines, or software tools for biological data using appropriate programming language. * Minimum of 1 year of experience ...
Computational Biologist
Chicago, IL · On-site
$130K - $163K/yr
Minimum 2 years of experience in developing bioinformatic methods, analysis pipelines, or software tools for biological data using appropriate programming language. * Minimum of 1 year of experience ...
Computational Biologist
Chicago, IL · On-site
$130K - $163K/yr
Minimum 2 years of experience in developing bioinformatic methods, analysis pipelines, or software tools for biological data using appropriate programming language. * Minimum of 1 year of experience ...
Laser Measurement Technician Trainee
Countryside, IL · On-site
$35K - $55K/yr
... D programmers to translate jobs for ordering. Trainees will be taught the process on how ... Ability to learn the company computer software program. * Mathematical competency. Knowledge ...
Laser Measurement Technician Trainee
Countryside, IL · On-site
$35K - $55K/yr
... D programmers to translate jobs for ordering. Trainees will be taught the process on how ... Ability to learn the company computer software program. * Mathematical competency. Knowledge ...
Leadership Trainee
Bolingbrook, IL · On-site
$27/hr
... software (CRM, Karmak Fusion, Decisiv, PACCAR.net, etc.) and customer management. * Growth ... Bachelor or Associate's degree preferred in business, marketing, transportation, engineering, or a ...
Quick apply
Leadership Trainee
Bolingbrook, IL · On-site
$27/hr
... software (CRM, Karmak Fusion, Decisiv, PACCAR.net, etc.) and customer management. * Growth ... Bachelor or Associate's degree preferred in business, marketing, transportation, engineering, or a ...
Leadership Trainee
Bolingbrook, IL · On-site
$27/hr
... software (CRM, Karmak Fusion, Decisiv, PACCAR.net, etc.) and customer management. * Growth ... Bachelor or Associate's degree preferred in business, marketing, transportation, engineering, or a ...
Leadership Trainee
Bolingbrook, IL · On-site
$27/hr
... software (CRM, Karmak Fusion, Decisiv, PACCAR.net, etc.) and customer management. * Growth ... Bachelor or Associate's degree preferred in business, marketing, transportation, engineering, or a ...
Leadership Trainee
Bolingbrook, IL · On-site
$27/hr
... software (CRM, Karmak Fusion, Decisiv, PACCAR.net, etc.) and customer management. * Growth ... Bachelor or Associate's degree preferred in business, marketing, transportation, engineering, or a ...
Leadership Trainee
Bolingbrook, IL · On-site
$27/hr
... software (CRM, Karmak Fusion, Decisiv, PACCAR.net, etc.) and customer management. * Growth ... Bachelor or Associate's degree preferred in business, marketing, transportation, engineering, or a ...
Trainee Bioinformatics Software Engineer information
See Chicago, IL salary details
$44.3K - $62.6K
6% of jobs
$62.6K - $80.9K
6% of jobs
$96K is the 25th percentile. Wages below this are outliers.
$80.9K - $99.2K
15% of jobs
$99.2K - $117.5K
11% of jobs
The median wage is $130.1K / yr.
$117.5K - $135.8K
17% of jobs
$135.8K - $154.1K
13% of jobs
$160.8K is the 75th percentile. Wages above this are outliers.
$154.1K - $172.5K
19% of jobs
$172.5K - $190.8K
10% of jobs
$190.8K - $209.1K
3% of jobs
$209.1K - $227.4K
0% of jobs
$227.4K - $245.7K
0% of jobs
$44.3K
$135K
$245.7K
How much do trainee bioinformatics software engineer jobs pay per year?
As of Jul 28, 2026, the average yearly pay for trainee bioinformatics software engineer in Chicago, IL is $135,004.00, according to ZipRecruiter salary data. Most workers in this role earn between $98,900.00 and $161,700.00 per year, depending on experience, location, and employer.
What are some common challenges faced by Trainee Bioinformatics Software Engineers when transitioning from academic projects to industry roles?
Trainee Bioinformatics Software Engineers often find the shift from academic to industry settings challenging due to differences in project scope, timelines, and collaborative expectations. In industry, there is a greater emphasis on writing maintainable, well-documented code and following software development best practices, such as version control and code reviews. Additionally, trainees must quickly adapt to working in cross-functional teams that include biologists, data scientists, and senior engineers, requiring strong communication and teamwork skills. Managing competing priorities and meeting strict deadlines can also be a new experience compared to the typically flexible timelines of academic research.
What is a Trainee Bioinformatics Software Engineer?
A Trainee Bioinformatics Software Engineer is an entry-level professional who assists in developing and maintaining software tools used to analyze biological data, such as DNA sequences or protein structures. They typically work under the supervision of experienced bioinformaticians and software engineers, learning to write code, manage databases, and process complex scientific datasets. The role often requires a mix of programming skills and a basic understanding of biology, allowing trainees to bridge the gap between computational and life sciences. As they gain experience, they contribute more significantly to research projects and the development of new bioinformatics applications.
What are the key skills and qualifications needed to thrive as a Trainee Bioinformatics Software Engineer, and why are they important?
To thrive as a Trainee Bioinformatics Software Engineer, you need a strong background in biology, computer science, or a related field, with foundational programming skills in languages like Python or R. Familiarity with bioinformatics tools, databases, and version control systems such as Git is typically required, and coursework or certifications in bioinformatics are advantageous. Analytical thinking, attention to detail, and effective communication are valuable soft skills for collaborating with interdisciplinary teams and interpreting complex data. These competencies enable you to efficiently develop software solutions and contribute to meaningful biological research.
What is the difference between Trainee Bioinformatics Software Engineer vs Junior Bioinformatics Developer?
| Aspect | Trainee Bioinformatics Software Engineer | Junior Bioinformatics Developer |
|---|---|---|
| Required Credentials | Typically a recent graduate or in early training, with a degree in bioinformatics, computer science, or related fields | Similar educational background, often entry-level or with minimal professional experience |
| Work Environment | Training programs, internships, or entry-level projects within research labs or biotech companies | Entry-level roles in research teams or biotech firms, focusing on developing bioinformatics tools |
| Employer & Industry Usage | Used by companies and research institutions to train new talent in bioinformatics software development | Commonly employed in biotech, pharma, and research organizations for initial software development tasks |
The main difference is that a Trainee Bioinformatics Software Engineer is in a training or internship phase, focusing on learning and skill development, while a Junior Bioinformatics Developer is an entry-level professional actively contributing to projects. Both roles require similar educational backgrounds but differ in experience level and responsibilities.
What are the most commonly searched types of Bioinformatics Software Engineer jobs in Chicago, IL? The most popular types of Bioinformatics Software Engineer jobs in Chicago, IL are:
What are popular job titles related to Trainee Bioinformatics Software Engineer jobs in Chicago, IL? For Trainee Bioinformatics Software Engineer jobs in Chicago, IL, the most frequently searched job titles are:
What job categories do people searching Trainee Bioinformatics Software Engineer jobs in Chicago, IL look for? The top searched job categories for Trainee Bioinformatics Software Engineer jobs in Chicago, IL are:
- Bioinformatic
- Entry Level Bioinformatics Computational Biology
- Full Time Cancer Bioinformatics
- Remote Bioinformatics Computational Biology
- Clinical Bioinformatics
- Bioinformatics Engineering
- Temporary Bioinformatics Computational Biology
- Bioinformatics Internships
- Bioinformatic Remote
- Volunteer Bioinformatics Computational Biology
Job description
Job Summary:
BiomeSense is a pioneering life sciences startup focused on harnessing the power of the gut microbiome to revolutionize personalized medicine. The Senior Bioinformatics Engineer will help build the MetaBiome platform, contributing to bioinformatics, data engineering, and product development while designing and maintaining robust infrastructure for microbiome data analysis.
Responsibilities:
• help design, implement, and maintain the robust, auditable backend required for the highest-quality extraction of clean microbiome data from raw shotgun metagenomic sequencing data.
• contribute to the development and maintenance of cloud-based infrastructure, including databases, distributed computing workflows, and REST endpoints, supporting a data platform that organizes microbial sequence data and associated clinical metadata.
• lead the design, execution, and documentation of reproducible computational experiments from concept to conclusion, including experimental design, data preparation, model selection, and evaluation strategies.
• Develop and implement novel analytical methodologies and algorithms informed by experimental findings and validated through rigorous evaluation.
• design, implement, and maintain robust data ingestion interfaces leveraging external APIs and clinical ontologies such as SNOMED, MedDRA, and ICD-10, adhering to software engineering best practices including wireframe design, unit testing, version control, code review, and security and compliance.
Qualifications:
Required:
• B.S. /M.S. /PhD in Computational Biology, Bioinformatics, Computer Science or a related field with 3+ yrs industry experience (biotech start-up ideal)
• Strong proficiency in Python and JavaScript, with experience building scalable, reusable, testable, and maintainable software.
• Proficiency with PostgreSQL or other relational SQL database systems.
• Familiarity with clinical ontologies such as SNOMED, ICD-11, ATC, and LOINC.
• Familiarity with Amazon Web Services and best practices in computer security.
• Proficiency with one or more modern frontend web technologies.
• Excellent communication skills for presenting complex scientific concepts to diverse stakeholders.
• Strong ownership mindset and the ability to execute in fast-moving environments.
• Strong fundamentals in bioinformatics pipelines, QC, and reproducibility.
Preferred:
• Bioinformatician with experience working with NGS data and bioinformatics pipeline verification and knowledge of microbiome-specific challenges (compositional data, variability, confounders).
• Familiarity with longitudinal / repeated-measures biological datasets.
• Experience integrating external ontologies or standardized vocabularies.
• Exposure to cloud infrastructure, workflow orchestration, or containerization.
• Interest in AI/ML applications built on large biological datasets.
Company:
BiomeSense is a developing novel technologies to enable continuous, at-home monitoring of the human microbiome. Founded in 2018, the company is headquartered in Chicago, USA, with a team of 2-10 employees. The company is currently Early Stage.
BiomeSense is a pioneering life sciences startup focused on harnessing the power of the gut microbiome to revolutionize personalized medicine. The Senior Bioinformatics Engineer will help build the MetaBiome platform, contributing to bioinformatics, data engineering, and product development while designing and maintaining robust infrastructure for microbiome data analysis.
Responsibilities:
• help design, implement, and maintain the robust, auditable backend required for the highest-quality extraction of clean microbiome data from raw shotgun metagenomic sequencing data.
• contribute to the development and maintenance of cloud-based infrastructure, including databases, distributed computing workflows, and REST endpoints, supporting a data platform that organizes microbial sequence data and associated clinical metadata.
• lead the design, execution, and documentation of reproducible computational experiments from concept to conclusion, including experimental design, data preparation, model selection, and evaluation strategies.
• Develop and implement novel analytical methodologies and algorithms informed by experimental findings and validated through rigorous evaluation.
• design, implement, and maintain robust data ingestion interfaces leveraging external APIs and clinical ontologies such as SNOMED, MedDRA, and ICD-10, adhering to software engineering best practices including wireframe design, unit testing, version control, code review, and security and compliance.
Qualifications:
Required:
• B.S. /M.S. /PhD in Computational Biology, Bioinformatics, Computer Science or a related field with 3+ yrs industry experience (biotech start-up ideal)
• Strong proficiency in Python and JavaScript, with experience building scalable, reusable, testable, and maintainable software.
• Proficiency with PostgreSQL or other relational SQL database systems.
• Familiarity with clinical ontologies such as SNOMED, ICD-11, ATC, and LOINC.
• Familiarity with Amazon Web Services and best practices in computer security.
• Proficiency with one or more modern frontend web technologies.
• Excellent communication skills for presenting complex scientific concepts to diverse stakeholders.
• Strong ownership mindset and the ability to execute in fast-moving environments.
• Strong fundamentals in bioinformatics pipelines, QC, and reproducibility.
Preferred:
• Bioinformatician with experience working with NGS data and bioinformatics pipeline verification and knowledge of microbiome-specific challenges (compositional data, variability, confounders).
• Familiarity with longitudinal / repeated-measures biological datasets.
• Experience integrating external ontologies or standardized vocabularies.
• Exposure to cloud infrastructure, workflow orchestration, or containerization.
• Interest in AI/ML applications built on large biological datasets.
Company:
BiomeSense is a developing novel technologies to enable continuous, at-home monitoring of the human microbiome. Founded in 2018, the company is headquartered in Chicago, USA, with a team of 2-10 employees. The company is currently Early Stage.
About BiomeSense
Sourced by ZipRecruiter
Industry
Biotechnology research and development
Company size
1 - 10 Employees
Headquarters location
Chicago, IL, US
Year founded
2018