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Trainee Bioinformatics Software Engineer Jobs (NOW HIRING)

BCC-NIH

Software Developer (C++, Python)

Bethesda, MD · On-site +1

Overview Black Canyon Consulting (BCC) is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and ...

BCC-NIH

Software Developer (C++, Python)

Bethesda, MD · On-site

Overview Black Canyon Consulting (BCC) is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and ...

Axle

Bioinformatics Engineer

Rockville, MD

With experts in biomedical science, software engineering, and program management, we focus on ... Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of ...

Axle

Bioinformatics Engineer

Rockville, MD · On-site

With experts in biomedical science, software engineering, and program management, we focus on ... Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of ...

Axle

Bioinformatics Engineer

Rockville, MD

With experts in biomedical science, software engineering, and program management, we focus on ... Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of ...

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Trainee Bioinformatics Software Engineer information

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$43K

$131.1K

$238.5K

How much do trainee bioinformatics software engineer jobs pay per year?

As of Jun 27, 2026, the average yearly pay for trainee bioinformatics software engineer in the United States is $131,053.00, according to ZipRecruiter salary data. Most workers in this role earn between $96,000.00 and $157,000.00 per year, depending on experience, location, and employer.

What are some common challenges faced by Trainee Bioinformatics Software Engineers when transitioning from academic projects to industry roles?

Trainee Bioinformatics Software Engineers often find the shift from academic to industry settings challenging due to differences in project scope, timelines, and collaborative expectations. In industry, there is a greater emphasis on writing maintainable, well-documented code and following software development best practices, such as version control and code reviews. Additionally, trainees must quickly adapt to working in cross-functional teams that include biologists, data scientists, and senior engineers, requiring strong communication and teamwork skills. Managing competing priorities and meeting strict deadlines can also be a new experience compared to the typically flexible timelines of academic research.

What is a Trainee Bioinformatics Software Engineer?

A Trainee Bioinformatics Software Engineer is an entry-level professional who assists in developing and maintaining software tools used to analyze biological data, such as DNA sequences or protein structures. They typically work under the supervision of experienced bioinformaticians and software engineers, learning to write code, manage databases, and process complex scientific datasets. The role often requires a mix of programming skills and a basic understanding of biology, allowing trainees to bridge the gap between computational and life sciences. As they gain experience, they contribute more significantly to research projects and the development of new bioinformatics applications.

What are the key skills and qualifications needed to thrive as a Trainee Bioinformatics Software Engineer, and why are they important?

To thrive as a Trainee Bioinformatics Software Engineer, you need a strong background in biology, computer science, or a related field, with foundational programming skills in languages like Python or R. Familiarity with bioinformatics tools, databases, and version control systems such as Git is typically required, and coursework or certifications in bioinformatics are advantageous. Analytical thinking, attention to detail, and effective communication are valuable soft skills for collaborating with interdisciplinary teams and interpreting complex data. These competencies enable you to efficiently develop software solutions and contribute to meaningful biological research.

What is the difference between Trainee Bioinformatics Software Engineer vs Junior Bioinformatics Developer?

AspectTrainee Bioinformatics Software EngineerJunior Bioinformatics Developer
Required CredentialsTypically a recent graduate or in early training, with a degree in bioinformatics, computer science, or related fieldsSimilar educational background, often entry-level or with minimal professional experience
Work EnvironmentTraining programs, internships, or entry-level projects within research labs or biotech companiesEntry-level roles in research teams or biotech firms, focusing on developing bioinformatics tools
Employer & Industry UsageUsed by companies and research institutions to train new talent in bioinformatics software developmentCommonly employed in biotech, pharma, and research organizations for initial software development tasks

The main difference is that a Trainee Bioinformatics Software Engineer is in a training or internship phase, focusing on learning and skill development, while a Junior Bioinformatics Developer is an entry-level professional actively contributing to projects. Both roles require similar educational backgrounds but differ in experience level and responsibilities.

More about Trainee Bioinformatics Software Engineer jobs
What cities are hiring for Trainee Bioinformatics Software Engineer jobs? Cities with the most Trainee Bioinformatics Software Engineer job openings:
What are the most commonly searched types of Bioinformatics Software Engineer jobs? The most popular types of Bioinformatics Software Engineer jobs are:
What states have the most Trainee Bioinformatics Software Engineer jobs? States with the most job openings for Trainee Bioinformatics Software Engineer jobs include:
What job categories do people searching Trainee Bioinformatics Software Engineer jobs look for? The top searched job categories for Trainee Bioinformatics Software Engineer jobs are:
Trainee Bioinformatics Software Engineer jobs near you
Infographic showing various Trainee Bioinformatics Software Engineer job openings in the United States as of June 2026, with employment types broken down into 100% Full Time. Highlights an 98% Physical, 1% Hybrid, and 1% Remote job distribution, with an average salary of $131,053 per year, or $63 per hour.
Bioinformatics Software Engineer II, Pathology and Lab Medicine

Bioinformatics Software Engineer II, Pathology and Lab Medicine

Memorial Sloan Kettering Cancer Center

New York, NY • On-site

$100K - $161K/yr

Full-time

Posted 16 days ago

Memorial Sloan Kettering Cancer Center rating

8.5

Company rating: 8.5 out of 10

Based on 133 frontline employees who took The Breakroom Quiz

18th of 877 rated healthcare providers

Job description

About Us:
The people of Memorial Sloan Kettering Cancer Center (MSK) are united by a singular mission: ending cancer for life. Our specialized care teams provide personalized, compassionate, expert care to patients of all ages. Informed by basic research done at our Sloan Kettering Institute, scientists across MSK collaborate to conduct innovative translational and clinical research that is driving a revolution in our understanding of cancer as a disease and improving the ability to prevent, diagnose, and treat it. MSK is dedicated to training the next generation of scientists and clinicians, who go on to pursue our mission at MSK and around the globe.
Exciting Opportunity at MSK! Our Pathology and Laboratory Medicine Department is looking for a Bioinformatics Software Engineer to join a dynamic team supporting state-of-the-art molecular diagnostics and cancer genomics programs. You will play a key role in developing software tools, web applications, and data workflows that empower our clinicians and researchers to interpret complex genomic information and advance precision oncology.
Role Overview
• Build web applications and APIs that enable genomic data visualization and clinical reporting
• Collaborate closely with bioinformaticians, laboratory scientists, researchers, and clinicians to translate workflow needs into robust software solutions
• Develop, optimize, and maintain computational workflows for NGS data processing
• Improve performance, scalability, and reliability of existing pipelines and tools
• Ensure data quality, reproducibility, and proper documentation across all projects
Key Qualifications
• BS in Bioinformatics, Computer Science, or related field + 5 years of experience OR MS in Bioinformatics, Computer Science, or related field + 2 years of experience
• Strong programming skills in Python
• Experience in web development (e.g., Flask, Django, React)
• Experience with relational databases (PostgreSQL, MySQL) and/or NoSQL (MongoDB)
• Hands-on experience with containerization (Docker, Kubernetes)
• Familiarity with version control (Git/GitHub) and CI/CD workflows
• Understanding of NGS data analysis workflows
• Strong debugging, analytical, and problem-solving skills
Preferred:
• Experience with cloud computing (AWS, GCP, or Azure)
• Knowledge of cancer genomics, variant calling, and annotation
Core Skills
• Ability to translate scientific and clinical needs into maintainable, well-designed software
• Strong communication skills and comfort collaborating with multidisciplinary teams
• Ability to work in fast-paced research and clinical environments
• Commitment to reproducible, traceable, and well-documented work
Additional Information
• Schedule: hybrid, at least 2 days a week in office, must reside in the NYC metro area
• Location: Joy Building, 321 E 61st Street, NYC
• Reporting to: Manager, Bioinformatics Pathology and Laboratory Medicine
Helpful Links:
  • Compensation Philosophy
  • Benefits

Pay Range: $100,600.00 - $161,000.00
FSLA Status: Exempt
Closing:
At MSK, we believe in fair, competitive pay that reflects your job, experience, and skills.
MSK is an equal opportunity and affirmative action employer committed to diversity and inclusion in all aspects of recruiting and employment. All qualified individuals are encouraged to apply and will receive consideration without regard to race, color, gender, gender identity or expression, sexual orientation, national origin, age, religion, creed, disability, veteran status or any other factor which cannot lawfully be used as a basis for an employment decision.
Federal law requires employers to provide reasonable accommodation to qualified individuals with disabilities. Please tell us if you require a reasonable accommodation to apply for a job or to perform your job. Examples of reasonable accommodation include making a change to the application process or work procedures, providing documents in an alternate format, using a sign language interpreter, or using specialized equipment.

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