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Biotech Process Engineer Jobs in Madison, WI (NOW HIRING)

Senior Process Engineer

Madison, WI · On-site

$104K - $135K/yr

... richness, biotech leadership, and access to world-class academia. Fujifilm is globally ... engineers and scientists; promote consistency in experimental design, process evaluation, data ...

Senior Bio Process Engineer

Madison, WI

$104K - $135K/yr

... richness, biotech leadership, and access to world-class academia. Fujifilm is globally ... engineers and scientists; promote consistency in experimental design, process evaluation, data ...

Senior Bio Process Engineer

Madison, WI · On-site

$104K - $135K/yr

... richness, biotech leadership, and access to world-class academia. Fujifilm is globally ... engineers and scientists; promote consistency in experimental design, process evaluation, data ...

Senior Bio Process Engineer

Madison, WI · On-site

$104K - $135K/yr

... richness, biotech leadership, and access to world-class academia. Fujifilm is globally ... engineers and scientists; promote consistency in experimental design, process evaluation, data ...

Job Summary Are you ready to apply your engineering expertise to innovative biotechnology and fermentation processes while driving operational excellence in a global manufacturing environment? IFF is ...

New

Producing documentation to support medical device regulatory processes Who This Is For * Students ... biotechnology. Our global teams work every day to solve the world's most complex challenges by ...

Producing documentation to support medical device regulatory processes Who This Is For * Students ... biotechnology. Our global teams work every day to solve the world's most complex challenges by ...

Producing documentation to support medical device regulatory processes Who This Is For * Students ... biotechnology. Our global teams work every day to solve the world's most complex challenges by ...

Producing documentation to support medical device regulatory processes Who This Is For * Students ... biotechnology. Our global teams work every day to solve the world's most complex challenges by ...

Implement new technologies and processes to improve packaging performance and efficiency. 7. Strong ... in the biotech, pharmaceutical, diagnostics, OTC, food, or beverage industry. 3. Strong ...

Implement new technologies and processes to improve packaging performance and efficiency. 7. Strong ... in the biotech, pharmaceutical, diagnostics, OTC, food, or beverage industry. 3. Strong ...

Product Design Engineer, IoT

Madison, WI · On-site

$130K - $156K/yr

... processes for global standards such as FCC, CE, ISO, and potentially FDA 21 CFR Part 820 or ISO ... biotech. 2. Experience designing products from initial concept phase through installation and ...

Product Design Engineer, IoT

Madison, WI · On-site

$130K - $156K/yr

... processes for global standards such as FCC, CE, ISO, and potentially FDA 21 CFR Part 820 or ISO ... biotech. 2. Experience designing products from initial concept phase through installation and ...

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Biotech Process Engineer information

See Madison, WI salary details

$49.9K

$92.7K

$143.6K

How much do biotech process engineer jobs pay per year?

As of Sep 11, 2026, the average yearly pay for biotech process engineer in Madison, WI is $92,733.00, according to ZipRecruiter salary data. Most workers in this role earn between $75,100.00 and $103,800.00 per year, depending on experience, location, and employer.

What does a Biotech Process Engineer do?

A Biotech Process Engineer designs, develops, and optimizes processes used in the production of biological products such as pharmaceuticals, vaccines, and biofuels. They work closely with scientists and manufacturing teams to scale up lab procedures to industrial levels while ensuring product quality and regulatory compliance. Their role often involves troubleshooting equipment, improving efficiency, and implementing new technologies within biotech manufacturing environments.

What are the key skills and qualifications needed to thrive as a Biotech Process Engineer, and why are they important?

To thrive as a Biotech Process Engineer, you need a solid background in chemical or biochemical engineering, process design, and regulatory compliance, typically supported by a relevant bachelor's or master's degree. Familiarity with process control systems, bioprocess simulation software, and industry-standard quality systems such as cGMP is essential. Strong analytical thinking, problem-solving abilities, and effective teamwork and communication skills help you excel in cross-functional environments. These skills ensure efficient, compliant, and innovative bioprocess operations, which are critical for product quality and organizational success.

What are some common challenges faced by Biotech Process Engineers during scale-up from laboratory to production?

Biotech Process Engineers often encounter challenges when scaling up processes from laboratory or pilot scale to full production. These challenges can include maintaining product consistency, ensuring process sterility, and adapting equipment to handle larger volumes without compromising yield or quality. Engineers must also collaborate closely with cross-functional teams such as quality assurance, validation, and manufacturing to implement changes efficiently and adhere to regulatory standards. Proactive problem-solving and strong communication skills are key to overcoming these hurdles and ensuring successful technology transfer.

What is the difference between Biotech Process Engineer vs Biotech Manufacturing Technician?

AspectBiotech Process EngineerBiotech Manufacturing Technician
CredentialsBachelor's degree in biotech, chemical engineering, or related field; often requires experience in process designAssociate's or bachelor's degree; focus on operational skills and equipment handling
Work EnvironmentDesigning, optimizing, and overseeing production processes in labs or manufacturing facilitiesOperating and maintaining equipment on the manufacturing floor
Job FocusProcess development, scale-up, troubleshooting, and process improvementExecuting production tasks, quality checks, and equipment setup

Biotech Process Engineers focus on designing and improving manufacturing processes, requiring technical and analytical skills. In contrast, Biotech Manufacturing Technicians handle day-to-day production operations. Both roles are essential in biotech manufacturing but differ in responsibilities and required qualifications.

What job categories do people searching Biotech Process Engineer jobs in Madison, WI look for?

The top searched job categories for Biotech Process Engineer jobs in Madison, WI are:

Infographic showing various Biotech Process Engineer job openings in Madison, WI as of September 2026, with employment types broken down into 1% As Needed, 74% Full Time, 21% Part Time, 3% Contract, and 1% Nights. Highlights an 89% Physical, 2% Hybrid, and 9% Remote job distribution, with an average salary of $92,733 per year, or $44.6 per hour.

Senior Process Engineer

Madison, WI • On-site

Merck & Co.
Pharmaceutical Product Wholesalers • 10K+ employees

$104K - $135K/yr

Other

Posted 6 days ago


Merck rating

8.0

Company rating: 8.0 out of 10

Based on 51 frontline employees who took The Breakroom Quiz


Job description

Position Overview

FCDI is recruiting for a Senior Process Engineer to support continued growth and ongoing customer projects within the Process Development (PD) team located in Madison, WI. As a Contract Development and Manufacturing Organization (CDMO), FCDI's PD team supports multiple customer programs by onboarding, developing, and transferring robust manufacturing processes for a diverse portfolio of iPSC-derived cell therapy products.

We are seeking an experienced, self-motivated, and detail-oriented process development engineer to serve as a technical authority within the PD team for late-stage clinical and commercial process development activities. In this hands-on laboratory role, you will continue building best practices, technical frameworks, and fit-for-purpose approaches for process characterization, scale-up studies, process control strategy development, and process lifecycle planning. You will collaborate closely with PD leadership and other cross-functional teams to ensure that processes and supporting strategies are scientifically sound, robust, phase-appropriate, and aligned with client needs and regulatory expectations.

The successful candidate will be motivated by the opportunity to partner closely with CDMO clients to plan, execute, and deliver high-quality process development work that meets project commitments and advances life-changing iPSC-derived therapies toward patient administration safely, efficiently, and with the highest standards of quality. This is an onsite role located at our sites in the Madison, WI area.

Company Overview

At FUJIFILM Cellular Dynamics, we're unlocking the power of human cells to change lives. Using revolutionary induced pluripotent stem cell (iPSC) technology, we drive advancements in drug discovery, disease modeling, cell therapy, research tools, and cell therapy manufacturing. Our mission is deeply meaningful, and we're looking for bold innovators to join us.

At FUJIFILM Cellular Dynamics, you'll thrive in a collaborative and cutting-edge environment that encourages creativity and celebrates breakthroughs. If you're ready to do work that makes a real impact and propels healthcare forward, this is your chance to be part of something extraordinary for science, patients, and yourself.

Our headquarters is in Madison, Wisconsin, a dynamic city celebrated for its lakes, parks, cultural richness, biotech leadership, and access to world-class academia.

Fujifilm is globally headquartered in Tokyo with over 70,000 employees across four key business segments of healthcare, electronics, business innovation, and imaging. We are guided and united by our Group Purpose of "giving our world more smiles." Visit: https://www.fujifilm.com/us/en/about/region/careers

Job Description Essential Job Functions
  • Independently conceive, plan, and lead process development activities for multiple internal and external programs, applying advanced engineering and scientific judgment to develop robust, scalable, and commercially relevant processes.
  • Evaluate and implement technologies that improve process understanding, robustness, scalability, automation, closure, and GMP readiness for cell manufacturing processes.
  • Provide technical leadership and subject-matter expertise for late-stage clinical process development activities, including process characterization, scale-up and scale-down studies, design space development, process control strategy development, and process lifecycle planning.
  • Apply expert knowledge of relevant regulatory, quality, and engineering requirements, including applicable ICH, FDA, GMP, and industry guidance, to ensure process development activities are scientifically sound, phase-appropriate, and aligned with regulatory expectations.
  • Analyze and interpret complex process and experimental data, troubleshoot technical challenges, identify root causes, and recommend improvements to processes, equipment, experimental approaches, and development strategies.
  • Make technically sound and scientific risk-based decisions and recommendations based on complex or incomplete sets of data, clearly communicating technical risk, tradeoffs, and recommendations to internal and external stakeholders.
  • Develop and maintain accurate, complete, and compliant technical documentation, including development plans, study protocols and reports, process characterization documents, risk assessments, process descriptions, control strategy summaries, technical reports, and other project-related records.
  • Communicate process development strategies, technical findings, and project status to cross-functional teams, clients, and diverse internal and external audiences through technical presentations, written reports, and project summaries.
  • Collaborate with cross-functional teams and with clients to ensure process development activities support project timelines, product quality, regulatory requirements, technology transfer needs, and commercial objectives.
  • Provide technical leadership, training, and mentorship to junior and mid-level engineers and scientists; promote consistency in experimental design, process evaluation, data analysis, troubleshooting, and documentation; and lead small- to mid-sized process development projects as assigned.
  • Identify and develop innovative, potentially patentable process improvements, technologies, or approaches in support of the organization's research, development, and commercial objectives.
  • Perform other duties as assigned.
Required Qualifications
  • PhD in a biosciences or bioengineering discipline or other closely related field plus at least two (2) years of related experience; or a Master's degree in a comparable field plus at least five (5) years of relevant experience; or a Bachelor's degree in a comparable field plus at least seven (7) years of related experience; relevant industry experience strongly preferred
  • Demonstrated experience leading late-stage clinical and commercial process development activities for biopharmaceutical manufacturing processes, including process characterization, process robustness, scale-up, and definition of manufacturing operation ranges
  • Experience with scalable upstream and/or downstream unit operations commonly used in cell manufacturing (e.g., multi-layer culture vessels, bioreactors, media manufacturing platforms, automated cell washing and concentration, fill/finish)
  • Strong understanding of Quality by Design, process validation, and GMP manufacturing requirements, with experience translating process development knowledge into strategies that support technology transfer, PPQ, control strategy, and commercial manufacturing
  • Experience partnering with MSAT, Manufacturing, Quality, Analytical Development, and other cross-functional teams to advance processes from development through technology transfer and GMP manufacturing
  • Demonstrated ability to develop and defend technical strategies using scientific and engineering principles, including interpretation of complex process data and application of statistical/design of experiments approaches
  • Strong written and verbal communication skills, with the ability to effectively communicate technical strategies, process understanding, risks, and recommendations to a range of technical and business stakeholders (both internal and external)
  • Demonstrated ability to mentor and develop other engineers and scientists and contribute to the advancement of process development practices and technical capabilities within the organization
  • Strong problem-solving and organizational skills, with demonstrated ability to manage multiple technical projects independently, reassess priorities as needs evolve, and adjust plans in a timely, disciplined manner while maintaining alignment with stakeholders, quality standards, and project commitments
  • Ability to provide flexible support for time-sensitive process development activities outside of standard business hours, including evenings, weekends, and holidays, as needed
  • Ability to maintain a regular laboratory presence and provide active, hands-on support for experimental execution, as required by project needs
  • Ability to occasionally lift up to 50 pounds
  • Ability to work with hazardous materials (i.e., chemicals, electrical equipment, and human tissue) without endangering oneself or others
  • Ability to wear standard laboratory PPE
Preferred Qualifications
  • Experience developing manufacturing processes for cell-based products; previous experience with iPSC-derived cell types is a plus.
  • Experience with and understanding of a variety of common analytical methods used to assess cell growth and differentiation, including cell counting, metabolite analysis, flow cytometry, PCR, and microscopic imaging
  • Experience working within a regulated environment, with a strong understanding of expectations and best practices
  • Experience working with or within a contract development and manufacturing organization (CDMO)
EEO Information

Fujifilm is committed to providing equal opportunities in hiring, promotion and advancement, compensation, benefits, and training regardless of nationality, age, gender, sexual orientation or gender identity, race, ethnicity, religion, political creed, ideology, national, or social origin, disability, veteran status, etc.

ADA Information

If you require reasonable accommodation in completing this application, interviewing, completing any pre-employment testing, or otherwise participating in the employee selection process, please direct your inquiries to our HR Department (fcdi-hr@fujifilm.com).

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