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Upstream Process Development Jobs (NOW HIRING)

Process Engineer, Upstream

Frederick, CO ยท On-site

$124K - $194K/yr

Technical lead for upstream processes and unit operations. Responsible for process modeling and ... Support Chemical Development in the development, characterization, and scaleup of innovative ...

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Upstream Process Development information

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$37

How much do upstream process development jobs pay per hour?

As of Jun 21, 2026, the average hourly pay for upstream process development in the United States is $26.51, according to ZipRecruiter salary data. Most workers in this role earn between $23.56 and $27.88 per hour, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive in Upstream Process Development, and why are they important?

Success in Upstream Process Development requires a strong background in biology, biochemistry, or chemical engineering, often with an advanced degree and experience in cell culture or fermentation techniques. Familiarity with bioreactors, process control systems, and analytical instrumentation, as well as knowledge of cGMP regulations, is essential. Critical thinking, problem-solving, and effective communication are important soft skills for optimizing processes and collaborating across multidisciplinary teams. These competencies ensure efficient development of scalable production processes, maintaining product quality and regulatory compliance.

What is the difference between Upstream Process Development vs Downstream Process Development?

AspectUpstream Process DevelopmentDownstream Process Development
FocusDevelopment of cell culture, fermentation, and bioreactor processesPurification, filtration, and formulation of bioproducts
Skills & CredentialsBioprocess engineering, molecular biology, biochemistryBioprocessing, chromatography, analytical chemistry
Work EnvironmentLaboratories, bioreactors, pilot plantsPurification facilities, labs, quality control
Industry UsageBiotech, pharmaceutical manufacturingBiotech, pharmaceutical manufacturing

Upstream Process Development focuses on creating and optimizing cell culture and fermentation processes to produce bioproducts. In contrast, Downstream Process Development involves purifying and finishing these products. Both roles are essential in biopharmaceutical manufacturing and require similar scientific backgrounds, but they specialize in different stages of bioprocessing.

What is upstream process development?

Upstream process development refers to the optimization and scaling of biological production processes that occur before product harvesting. This primarily involves the cultivation of cells or microorganisms to produce a desired product, such as a protein or antibody, in bioreactors. Scientists in this field work on improving cell lines, culture media, and fermentation conditions to maximize yield and quality. Upstream process development is a critical early phase in biomanufacturing, laying the foundation for downstream processing and overall production efficiency.

What are some common challenges faced in upstream process development and how do teams typically address them?

One of the main challenges in upstream process development is optimizing cell culture conditions to consistently achieve high yields and product quality. Teams often encounter variability in biological systems and must troubleshoot issues such as contamination, scale-up inconsistencies, or nutrient limitations. Collaboration with analytical, downstream, and quality teams is essential to identify root causes and implement solutions. Regular data review meetings, cross-functional problem-solving, and continuous process improvement are standard practices to ensure robust upstream processes.
More about Upstream Process Development jobs
What cities are hiring for Upstream Process Development jobs? Cities with the most Upstream Process Development job openings:
What states have the most Upstream Process Development jobs? States with the most job openings for Upstream Process Development jobs include:
Infographic showing various Upstream Process Development job openings in the United States as of June 2026, with employment types broken down into 7% As Needed, and 93% Part Time. Highlights an 94% Physical, 2% Hybrid, and 4% Remote job distribution, with an average salary of $55,150 per year, or $26.5 per hour.
Principal Scientist, Upstream Development

Principal Scientist, Upstream Development

MSD

Rahway, NJ โ€ข On-site

Full-time

Medical, Dental, Vision, Retirement, PTO

Posted yesterday


Job description

Job Description

USA - New Jersey - Rahway

Job Description

The Biologics Process Research & Development organization within our Company Research Labs is responsible for developing the drug substance manufacturing processes for our Company's biologics pipeline. We work closely with colleagues in Discovery, Pre-clinical and Early Development to rapidly develop manufacturing processes for biotherapeutics and efficiently manufacture material to supply clinical trials. We are also responsible for commercial process development and development and implementation of new manufacturing technologies. We work with our partners in our Company Manufacturing Division to commercialize and launch new products.

We are seeking a highly motivated and experienced individual to join our Upstream Development Department as a Principal Scientist. In this role, the successful candidate will work closely with scientists in the Upstream Development Department to develop and refine technical strategy related to next generation processing for assets in early- and late-stage clinical development. Applicants must have effective organizational and multi-tasking skills, demonstrated excellent scientific leadership, and superior written and oral communications abilities. A track record of leveraging data science and digital tools for delivering impactful solutions to complex problems are distinguishing. Evidence of strong cross-functional collaboration, experience successfully mentoring junior scientist, leading projects, and strong external presence through scientific excellence are expected.

JOB RESPONSIBILITIES:

The successful candidate will contribute to CMC development of our Company's pipeline, playing an active role in development of cell culture processes and transfer to clinical and commercial manufacturing sites. She/He will also develop strategies for process and pipeline-facing innovation.

Responsibilities include:

  • Leading biologic upstream process development for first-in-human and commercial processes by efficiently developing high yield, robust and scalable cell culture processes.

  • Providing technical direction for process development, characterization, commercialization, and regulatory filing activities to ensure a smooth and clear path to successful PPQs an BLAs for our company pipeline.

  • Advancing upstream platform process technical strategy and championing creative process improvement initiatives

  • Initiating new collaborations to assess new technologies and industry strategies with relevance to our Company.

  • Collaborating with academia, industry partners, and vendors to drive development, innovation and adoption of new process technologies with broad impact to projects or platform.

  • Keeping up to date with the external patent and literature environment; actively presents and publishes externally and pursues patenting strategies.

  • Supervising, coaching and educating junior scientists

Minimum education required:

Ph.D. with 8+ years of industry experience, Master with 10+ years industry experience, bachelor's with 14+ years industry in Chemical Engineering, Bioengineering, Biochemistry or a related field

Required experience and skills:

  • Proven record of accomplishments in upstream process and technology development with a strong scientific publication and presentation track record.

  • Experience in CHO fed-batch cell culture and a working understanding of downstream & analytics.

  • Understanding and hands-on experience on cell culture bioreactors including microbioreactors, bench-scale and pilot-scale bioreactors, and scaleup/tech transfer activities.

  • Working knowledge of cell culture media, CHO cell biology and metabolism, DOE statistics and computational fluid dynamics.

  • Ability to direct the planning, execution, analysis, and documentation of all stages of cell culture process development.

  • Ability to work in a matrixed team environment and collaborate with both internal and external partners including vendors.

  • Knowledge of biologics CMC development cycle.

  • Demonstrated ability for taking initiative, creativity, and innovation in problem solving.

  • Demonstrated ability to develop staff to maximize utilization of talent and actively guides career development; builds strong and collaborative teams.

Preferred experience and skills:

  • Experience with state-of-the-art cell culture processes including intensified inoculum and perfusion process development.

  • Experience with early- and late-stage commercial process development, technology transfer, scale-down model qualification and process characterization.

  • Experience with high throughput microbioreactor systems, and advanced in situ analytics for process monitoring and control.

  • Expertise in media development, media/solution chemistry.

  • Background in data science approaches related to cell culture and predictive modeling e.g., metabolic flux analysis (MFA), omics, machine learning; experience integrating PAT efforts) and computational fluid dynamics (CFD).

  • Experience leading cross functional, program development teams.

Required Skills:

Adaptability, Adaptability, Biodesign, Cell Culture Process Development, Cell Cultures, Cell Line Development, Chemical Engineering, Clinical Supplies Management, Clinical Trials, Combination Products, Computational Fluid Dynamics (CFD), Data Analysis, Finite Element Analysis (FEA), Flux Analysis, Immunochemistry, Innovative Thinking, Leadership Mentoring, Mammalian Cell Culture, Manufacturing Processes, Media Development, Pharmaceutical Process Development, Professional Collaboration, Professional Networking, Quality by Design, Regulatory Filings {+ 1 more}

Preferred Skills:

Current Employees apply HERE

Current Contingent Workers apply HERE

US and Puerto Rico Residents Only:

Our company is committed to inclusion, ensuring that candidates can engage in a hiring process that exhibits their true capabilities. Please click here if you need an accommodation during the application or hiring process.

As an Equal Employment Opportunity Employer, we provide equal opportunities to all employees and applicants for employment and prohibit discrimination on the basis of race, color, age, religion, sex, sexual orientation, gender identity, national origin, protected veteran status, disability status, or other applicable legally protected characteristics.As a federal contractor, we comply with all affirmative action requirements for protected veterans and individuals with disabilities. For more information about personal rights under the U.S. Equal Opportunity Employment laws, visit:

EEOC Know Your Rights

EEOC GINA Supplement

We are proud to be a company that embraces the value of bringing together, talented, and committed people with diverse experiences, perspectives, skills and backgrounds. The fastest way to breakthrough innovation is when people with diverse ideas, broad experiences, backgrounds, and skills come together in an inclusive environment. We encourage our colleagues to respectfully challenge one another's thinking and approach problems collectively.

Learn more about your rights, including under California, Colorado and other US State Acts

The salary range for this role is

$173,200.00 - $272,600.00

This is the lowest to highest salary we in good faith believe we would pay for this role at the time of this posting. An employee's position within the salary range will be based on several factors including, but not limited to relevant education, qualifications, certifications, experience, skills, geographic location, government requirements, and business or organizational needs.

The successful candidate will be eligible for annual bonus and long-term incentive, if applicable.

We offer a comprehensive package of benefits. Available benefits include medical, dental, vision healthcare and other insurance benefits (for employee and family), retirement benefits, including 401(k), paid holidays, vacation, and compassionate and sick days. More information about benefits is available at https://jobs.merck.com/us/en/compensation-and-benefits.

You can apply for this role through https://jobs.merck.com/us/en (or via the Workday Jobs Hub if you are a current employee). The application deadline for this position is stated on this posting.

San Francisco Residents Only:We will consider qualified applicants with arrest and conviction records for employment in compliance with the San Francisco Fair Chance Ordinance

Los Angeles Residents Only:We will consider for employment all qualified applicants, including those with criminal histories, in a manner consistent with the requirements of applicable state and local laws, including the City of Los Angeles' Fair Chance Initiative for Hiring Ordinance

Search Firm Representatives Please Read Carefully
Merck & Co., Inc., Rahway, NJ, USA, also known as Merck Sharp & Dohme LLC, Rahway, NJ, USA, does not accept unsolicited assistance from search firms for employment opportunities. All CVs / resumes submitted by search firms to any employee at our company without a valid written search agreement in place for this position will be deemed the sole property of our company. No fee will be paid in the event a candidate is hired by our company as a result of an agency referral where no pre-existing agreement is in place. Where agency agreements are in place, introductions are position specific. Please, no phone calls or emails.

Employee Status:

Regular

Relocation:

Domestic

VISA Sponsorship:

Yes

Travel Requirements:

10%

Flexible Work Arrangements:

Not Applicable

Shift:

Not Indicated

Valid Driving License:

No

Hazardous Material(s):

n/a

Job Posting End Date:

06/20/2026

*A job posting is effective until 11:59:59PM on the day BEFOREthe listed job posting end date. Please ensure you apply to a job posting no later than the day BEFORE the job posting end date.