1

Senior Protein Engineer Jobs (NOW HIRING)

Our team of protein engineers, biologists, and computational scientists works across this full ... Manifold Bio is seeking an exceptional Senior Director of Biotherapeutics to help guide and mature ...

next page

Showing results 1-20

Senior Protein Engineer information

See salary details

$59.5K

$126.6K

$183.5K

How much do senior protein engineer jobs pay per year?

As of Jun 6, 2026, the average yearly pay for senior protein engineer in the United States is $126,557.00, according to ZipRecruiter salary data. Most workers in this role earn between $104,500.00 and $143,500.00 per year, depending on experience, location, and employer.

What is the difference between Senior Protein Engineer vs Protein Scientist?

AspectSenior Protein EngineerProtein Scientist
Required CredentialsBachelor's or Master's in Biochemistry, Molecular Biology, or related fields; experience in protein engineeringBachelor's or Master's; often a Ph.D. for advanced research roles; expertise in protein analysis
Work EnvironmentBiotech or pharmaceutical R&D labs, manufacturing facilitiesAcademic labs, research institutions, biotech companies
Employer & Industry UsageUsed in biotech, pharma, and industrial enzyme companiesCommon in academic research, biotech R&D, and pharmaceutical development

While both roles focus on proteins, Senior Protein Engineers typically work on designing and optimizing proteins for industrial applications, whereas Protein Scientists often conduct fundamental research to understand protein functions. The roles overlap in skills and industry but differ in focus and seniority.

What are Senior Protein Engineers?

Senior Protein Engineers are experienced scientists who design, modify, and optimize proteins for specific industrial, medical, or research applications. They use advanced techniques in molecular biology, biochemistry, and computational modeling to improve protein stability, activity, or specificity. These professionals often lead research projects, mentor junior staff, and collaborate with interdisciplinary teams to bring innovative protein-based solutions to market.

What are the key skills and qualifications needed to thrive as a Senior Protein Engineer, and why are they important?

To thrive as a Senior Protein Engineer, you need expertise in protein biochemistry, molecular biology, and structural biology, typically supported by a Ph.D. or equivalent experience in a related field. Proficiency in tools such as protein modeling software (e.g., Rosetta, PyMOL), high-throughput screening platforms, and familiarity with analytical instruments like mass spectrometers is essential. Strong problem-solving, collaboration, and project management skills help drive innovation and successful cross-functional teamwork. These skills and qualities are crucial for efficiently designing, optimizing, and characterizing proteins to advance scientific discoveries and product development.

How does a Senior Protein Engineer typically collaborate with cross-functional teams during the development of new protein therapeutics?

Senior Protein Engineers often work closely with multidisciplinary teams, including molecular biologists, biochemists, computational scientists, and regulatory specialists, to bring new protein therapeutics from concept to reality. They contribute their expertise in protein design and engineering, lead experimental planning, and interpret complex data to guide project direction. Regular meetings and collaborative problem-solving sessions are common, ensuring that project goals align across departments. This collaborative environment fosters innovation, but also requires strong communication and project management skills.
More about Senior Protein Engineer jobs
What cities are hiring for Senior Protein Engineer jobs? Cities with the most Senior Protein Engineer job openings:
What are the most commonly searched types of Protein Engineer jobs? The most popular types of Protein Engineer jobs are:
What states have the most Senior Protein Engineer jobs? States with the most job openings for Senior Protein Engineer jobs include:
What job categories do people searching Senior Protein Engineer jobs look for? The top searched job categories for Senior Protein Engineer jobs are:
Infographic showing various Senior Protein Engineer job openings in the United States as of May 2026, with employment types broken down into 92% Full Time, 7% Part Time, and 1% Contract. Highlights an 90% Physical, 1% Hybrid, and 9% Remote job distribution, with an average salary of $126,557 per year, or $60.8 per hour.
Scientist II/Senior Scientist, Protein Science (Menlo Park, CA)

Scientist II/Senior Scientist, Protein Science (Menlo Park, CA)

CEDENT

Menlo Park, CA

$107K - $147K/yr

Other

Posted 16 days ago


Job description

Location: Menlo Park, CA Job Description We are seeking a Scientist / Sr. Scientist to join the Protein Science team at our Menlo Park HQ. As a member of the Protein Science Team, you will focus on our antibody production and characterization efforts and be part of a highly collaborative, interdisciplinary drug-development team leveraging the discovery of novel natural products for the next-generation of ADC therapies.

You will support engineering/design, expression, purification and characterization of antibodies as well as antibody drug conjugates that deliver new drugs to overcome limitations of current cancer treatments and impact patient outcomes. Your role will be instrumental in delivering high-quality molecules to support in vitro and in vivo studies. You will seek solutions to scale antibody production capacity and streamline throughput and timelines for material generation.

We are seeking innovative team members inspired by our mission to work collaboratively in building the next-generation drug company. Candidates should demonstrate scientific curiosity, efficient time management, excellent organizational and communication skills, and a passion for science. The role is laboratory-based.

Key Responsibilities Drive in-house protein/antibody production, including: Design and construction of expression vectors. Maintain mammalian cell culture systems (HEK293, CHO), perform and optimize transient transfections for protein/antibody production. Perform batch and FPLC based purifications (Affinity, IEX, SEC, and other chromatography-based methods) of monoclonal, bispecific and other engineered antibody formats.

Maintain the AKTA systems to ensure endotoxin-free. Develop and optimize purification and analytical characterization methods and protocols for antibodies and antibody drug-conjugates to support in vitro and in vivo studies. Oversee external production efforts by CRO partners.

Ensure the highest standard of quality in antibody and antibody drug-conjugate production and batch records. Maintain detailed laboratory notebooks, analyze experimental data and interpret results to guide decision-making processes. Proactively identify workflow limitations and implement solutions.

Collaborate with a diverse team to answer scientific questions and deliver quality and timely findings in support of therapeutic candidate advancement. Effectively communicate findings and interpretation of results. Comply with company health and safety policies and general laboratory practices.

Qualifications Scientist II: Bachelor or Master Degree in protein sciences or relevant field with > 15 years hands-on industry experience in protein science is required. Sr. Scientist: PhD in Molecular Biology, Biochemistry, Structural Biology, Immunology, or a related field with > 8 years industry experience in protein science or antibody / protein engineering.

Thorough understanding of antibody structure and protein biochemistry best practices. Demonstrated experience with molecular biology techniques, including DNA construct design, PCR, DNA purification and molecular cloning is required. Demonstrated experience with sterile technique and suspension cell culture for protein production is required.

Demonstrated expertise with AKTA systems and Unicorn software is required. Significant knowledge and hands-on experience in analytical methods (such as HPLC, aSEC, IEX, HIC, LCMS, SDS-PAGE, ce-SDS, ce-IEF, HCP and endotoxin detection) is required. Experience with gram scale antibody production and purification and/or experience with antibody-drug conjugate (ADC) technologies, including familiarity with linker-payload strategies, conjugation methods, and biophysical and functional evaluation of ADCs is highly desired.

Experience with target binding assays, developability assessments and/or CRO management is a plus. Strong desire to continue seeking new technological innovations supporting laboratory work. Excellent analytical and problem-solving skills, with the ability to troubleshoot experiments and propose innovative solutions.

Effective communication and collaboration skills, with the ability to work independently and as part of a multidisciplinary research team. Self-motivation, initiative and boldness to dive into a fast-paced new startup. What We Offer A flexible and dynamic work environment where you pave your own path, Client cultivates employees' unique strengths at all levels and provides mobility across departments.

"All Hands Meetings" provide an opportunity to share company and team updates. These meetings are rooted in our value of transparency. They are designed to foster a culture of collaboration, curiosity, and open communication.

Rapid career advancement for driven performers. Access to scientific conferences all over the country throughout the year. A range of amenities, courtesy of the Menlo Park Labs business park, including shuttle, gym, rock-climbing wall, pool, sports courts, cafe, bike lockers, and free EV charging stations.

Opportunities to engage with the Client community through team-building events like our monthly Client Happy Hour and holiday parties.


Cedent logo

About Cedent

Sourced by ZipRecruiter

CEDENT strives to attract and retain the best people and provide an environment where they can all develop professionally and build a rewarding career. As a result, we create an inclusive environment that is rich in diversity, acknowledges each individual's uniqueness and promotes respect, personal achievement and stewardship. Our clients are global and so is CEDENT. We build and maintain a global workforce that includes people from different backgrounds, with a vast range of skills and experience all united by a common culture and commitment to help our clients achieve high performance. Cultivating a diverse workforce and inclusive work environment makes business sense. Our peoples varied skills are the talent engine that powers CEDENT, enabling it in turn to deliver the innovative solutions that help our clients outperform competitors.

Industry

It services

Company size

11 - 50 Employees

Headquarters location

Plano, TX, US

Year founded

2008